Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2615

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2614 and EX28DRAFT_2615 are separated by 13 nucleotidesEX28DRAFT_2615 and EX28DRAFT_2616 are separated by 50 nucleotidesEX28DRAFT_2616 and EX28DRAFT_2617 are separated by 99 nucleotides EX28DRAFT_2614: EX28DRAFT_2614 - Multidrug resistance efflux pump, at 2,652,041 to 2,653,183 _2614 EX28DRAFT_2615: EX28DRAFT_2615 - drug resistance transporter, EmrB/QacA subfamily, at 2,653,197 to 2,654,741 _2615 EX28DRAFT_2616: EX28DRAFT_2616 - hypothetical protein, at 2,654,792 to 2,655,088 _2616 EX28DRAFT_2617: EX28DRAFT_2617 - Ion channel, at 2,655,188 to 2,655,883 _2617 Position (kb) 2653 2654 2655Strain fitness (log2 ratio) -2 -1 0 1at 2652.212 kb on + strand, within EX28DRAFT_2614at 2652.329 kb on - strand, within EX28DRAFT_2614at 2652.946 kb on - strand, within EX28DRAFT_2614at 2652.996 kb on + strand, within EX28DRAFT_2614at 2652.997 kb on - strand, within EX28DRAFT_2614at 2653.069 kb on + strandat 2653.069 kb on + strandat 2653.070 kb on - strandat 2653.166 kb on - strandat 2653.166 kb on - strandat 2653.202 kb on + strandat 2653.202 kb on + strandat 2653.202 kb on + strandat 2653.202 kb on + strandat 2653.203 kb on - strandat 2653.203 kb on - strandat 2653.203 kb on - strandat 2653.203 kb on - strandat 2653.203 kb on - strandat 2653.207 kb on + strandat 2653.207 kb on + strandat 2653.207 kb on + strandat 2653.208 kb on - strandat 2653.208 kb on - strandat 2653.208 kb on - strandat 2653.245 kb on - strandat 2653.250 kb on - strandat 2653.267 kb on + strandat 2653.268 kb on - strandat 2653.268 kb on - strandat 2653.387 kb on - strand, within EX28DRAFT_2615at 2653.484 kb on + strand, within EX28DRAFT_2615at 2653.639 kb on + strand, within EX28DRAFT_2615at 2653.728 kb on - strand, within EX28DRAFT_2615at 2653.815 kb on - strand, within EX28DRAFT_2615at 2653.815 kb on - strand, within EX28DRAFT_2615at 2653.820 kb on + strand, within EX28DRAFT_2615at 2654.103 kb on + strand, within EX28DRAFT_2615at 2654.105 kb on + strand, within EX28DRAFT_2615at 2654.106 kb on - strand, within EX28DRAFT_2615at 2654.111 kb on - strand, within EX28DRAFT_2615at 2654.116 kb on - strand, within EX28DRAFT_2615at 2654.117 kb on + strand, within EX28DRAFT_2615at 2654.117 kb on + strand, within EX28DRAFT_2615at 2654.118 kb on - strand, within EX28DRAFT_2615at 2654.118 kb on - strand, within EX28DRAFT_2615at 2654.190 kb on - strand, within EX28DRAFT_2615at 2654.219 kb on - strand, within EX28DRAFT_2615at 2654.222 kb on + strand, within EX28DRAFT_2615at 2654.222 kb on + strand, within EX28DRAFT_2615at 2654.308 kb on + strand, within EX28DRAFT_2615at 2654.343 kb on + strand, within EX28DRAFT_2615at 2654.343 kb on + strand, within EX28DRAFT_2615at 2654.344 kb on - strand, within EX28DRAFT_2615at 2654.346 kb on + strand, within EX28DRAFT_2615at 2654.346 kb on + strand, within EX28DRAFT_2615at 2654.346 kb on + strand, within EX28DRAFT_2615at 2654.346 kb on + strand, within EX28DRAFT_2615at 2654.347 kb on - strand, within EX28DRAFT_2615at 2654.380 kb on + strand, within EX28DRAFT_2615at 2654.380 kb on + strand, within EX28DRAFT_2615at 2654.381 kb on - strand, within EX28DRAFT_2615at 2654.489 kb on + strand, within EX28DRAFT_2615at 2654.490 kb on - strand, within EX28DRAFT_2615at 2654.491 kb on + strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.492 kb on - strand, within EX28DRAFT_2615at 2654.526 kb on - strand, within EX28DRAFT_2615at 2654.549 kb on + strand, within EX28DRAFT_2615at 2654.606 kb on - strandat 2654.807 kb on + strandat 2655.235 kb on + strandat 2655.595 kb on + strand, within EX28DRAFT_2617at 2655.607 kb on + strand, within EX28DRAFT_2617at 2655.667 kb on + strand, within EX28DRAFT_2617

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,652,212 + EX28DRAFT_2614 0.15 -0.8
2,652,329 - EX28DRAFT_2614 0.25 -2.0
2,652,946 - EX28DRAFT_2614 0.79 +0.7
2,652,996 + EX28DRAFT_2614 0.84 +0.9
2,652,997 - EX28DRAFT_2614 0.84 +0.4
2,653,069 + +0.1
2,653,069 + +0.2
2,653,070 - -0.4
2,653,166 - -0.5
2,653,166 - +0.6
2,653,202 + +1.1
2,653,202 + -0.2
2,653,202 + +0.1
2,653,202 + +0.2
2,653,203 - -2.0
2,653,203 - +0.6
2,653,203 - +0.2
2,653,203 - -0.1
2,653,203 - -1.2
2,653,207 + -1.0
2,653,207 + -0.0
2,653,207 + -0.2
2,653,208 - +0.1
2,653,208 - +0.1
2,653,208 - +0.0
2,653,245 - +1.2
2,653,250 - +0.7
2,653,267 + +0.7
2,653,268 - +0.1
2,653,268 - +0.5
2,653,387 - EX28DRAFT_2615 0.12 +0.1
2,653,484 + EX28DRAFT_2615 0.19 +0.5
2,653,639 + EX28DRAFT_2615 0.29 -0.3
2,653,728 - EX28DRAFT_2615 0.34 +0.3
2,653,815 - EX28DRAFT_2615 0.40 -0.7
2,653,815 - EX28DRAFT_2615 0.40 -0.0
2,653,820 + EX28DRAFT_2615 0.40 +0.1
2,654,103 + EX28DRAFT_2615 0.59 +0.4
2,654,105 + EX28DRAFT_2615 0.59 -0.2
2,654,106 - EX28DRAFT_2615 0.59 +0.0
2,654,111 - EX28DRAFT_2615 0.59 -0.1
2,654,116 - EX28DRAFT_2615 0.59 -0.4
2,654,117 + EX28DRAFT_2615 0.60 +1.3
2,654,117 + EX28DRAFT_2615 0.60 +0.0
2,654,118 - EX28DRAFT_2615 0.60 +0.9
2,654,118 - EX28DRAFT_2615 0.60 -0.7
2,654,190 - EX28DRAFT_2615 0.64 -1.0
2,654,219 - EX28DRAFT_2615 0.66 +0.3
2,654,222 + EX28DRAFT_2615 0.66 +0.1
2,654,222 + EX28DRAFT_2615 0.66 +0.1
2,654,308 + EX28DRAFT_2615 0.72 +0.8
2,654,343 + EX28DRAFT_2615 0.74 -1.5
2,654,343 + EX28DRAFT_2615 0.74 +0.2
2,654,344 - EX28DRAFT_2615 0.74 +0.7
2,654,346 + EX28DRAFT_2615 0.74 +0.3
2,654,346 + EX28DRAFT_2615 0.74 -1.8
2,654,346 + EX28DRAFT_2615 0.74 +0.4
2,654,346 + EX28DRAFT_2615 0.74 +0.3
2,654,347 - EX28DRAFT_2615 0.74 +0.9
2,654,380 + EX28DRAFT_2615 0.77 +0.3
2,654,380 + EX28DRAFT_2615 0.77 +0.5
2,654,381 - EX28DRAFT_2615 0.77 -0.3
2,654,489 + EX28DRAFT_2615 0.84 +1.0
2,654,490 - EX28DRAFT_2615 0.84 +0.2
2,654,491 + EX28DRAFT_2615 0.84 +0.2
2,654,492 - EX28DRAFT_2615 0.84 -0.1
2,654,492 - EX28DRAFT_2615 0.84 +0.3
2,654,492 - EX28DRAFT_2615 0.84 +0.2
2,654,492 - EX28DRAFT_2615 0.84 +0.9
2,654,492 - EX28DRAFT_2615 0.84 +0.0
2,654,492 - EX28DRAFT_2615 0.84 +0.2
2,654,526 - EX28DRAFT_2615 0.86 -0.3
2,654,549 + EX28DRAFT_2615 0.88 -0.2
2,654,606 - -0.3
2,654,807 + +0.3
2,655,235 + +0.5
2,655,595 + EX28DRAFT_2617 0.58 -1.2
2,655,607 + EX28DRAFT_2617 0.60 -0.0
2,655,667 + EX28DRAFT_2617 0.69 +0.4

Or see this region's nucleotide sequence