Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2609 and EX28DRAFT_2610 are separated by 120 nucleotides EX28DRAFT_2610 and EX28DRAFT_2611 are separated by 12 nucleotides EX28DRAFT_2611 and EX28DRAFT_2612 are separated by 123 nucleotides
EX28DRAFT_2609: EX28DRAFT_2609 - Predicted permease, at 2,646,116 to 2,647,225
_2609
EX28DRAFT_2610: EX28DRAFT_2610 - diguanylate cyclase (GGDEF) domain, at 2,647,346 to 2,649,130
_2610
EX28DRAFT_2611: EX28DRAFT_2611 - AraC-type DNA-binding domain-containing proteins, at 2,649,143 to 2,649,547
_2611
EX28DRAFT_2612: EX28DRAFT_2612 - transcriptional regulator, TetR family, at 2,649,671 to 2,650,315
_2612
Position (kb)
2647
2648
2649
2650 Strain fitness (log2 ratio)
-1
0
1 at 2646.390 kb on - strand, within EX28DRAFT_2609 at 2646.390 kb on - strand, within EX28DRAFT_2609 at 2646.551 kb on + strand, within EX28DRAFT_2609 at 2646.552 kb on - strand, within EX28DRAFT_2609 at 2646.552 kb on - strand, within EX28DRAFT_2609 at 2646.623 kb on + strand, within EX28DRAFT_2609 at 2646.623 kb on + strand, within EX28DRAFT_2609 at 2646.623 kb on + strand, within EX28DRAFT_2609 at 2646.624 kb on - strand, within EX28DRAFT_2609 at 2646.757 kb on + strand, within EX28DRAFT_2609 at 2646.991 kb on + strand, within EX28DRAFT_2609 at 2647.166 kb on - strand at 2647.239 kb on + strand at 2647.239 kb on + strand at 2647.239 kb on + strand at 2647.239 kb on + strand at 2647.240 kb on - strand at 2647.240 kb on - strand at 2647.240 kb on - strand at 2647.321 kb on - strand at 2647.331 kb on + strand at 2647.376 kb on + strand at 2647.377 kb on - strand at 2647.541 kb on + strand, within EX28DRAFT_2610 at 2647.579 kb on + strand, within EX28DRAFT_2610 at 2647.579 kb on + strand, within EX28DRAFT_2610 at 2647.687 kb on + strand, within EX28DRAFT_2610 at 2647.954 kb on + strand, within EX28DRAFT_2610 at 2647.954 kb on + strand, within EX28DRAFT_2610 at 2647.956 kb on + strand, within EX28DRAFT_2610 at 2647.957 kb on - strand, within EX28DRAFT_2610 at 2648.004 kb on + strand, within EX28DRAFT_2610 at 2648.210 kb on - strand, within EX28DRAFT_2610 at 2648.249 kb on - strand, within EX28DRAFT_2610 at 2648.429 kb on + strand, within EX28DRAFT_2610 at 2648.519 kb on - strand, within EX28DRAFT_2610 at 2648.674 kb on + strand, within EX28DRAFT_2610 at 2648.934 kb on - strand, within EX28DRAFT_2610 at 2648.938 kb on + strand, within EX28DRAFT_2610 at 2648.938 kb on + strand, within EX28DRAFT_2610 at 2649.156 kb on - strand at 2649.189 kb on + strand, within EX28DRAFT_2611 at 2649.190 kb on - strand, within EX28DRAFT_2611 at 2649.296 kb on + strand, within EX28DRAFT_2611 at 2649.297 kb on - strand, within EX28DRAFT_2611 at 2649.319 kb on + strand, within EX28DRAFT_2611 at 2649.319 kb on + strand, within EX28DRAFT_2611 at 2649.319 kb on + strand, within EX28DRAFT_2611 at 2649.320 kb on - strand, within EX28DRAFT_2611 at 2649.331 kb on + strand, within EX28DRAFT_2611 at 2649.366 kb on + strand, within EX28DRAFT_2611 at 2649.374 kb on + strand, within EX28DRAFT_2611 at 2649.374 kb on + strand, within EX28DRAFT_2611 at 2649.374 kb on + strand, within EX28DRAFT_2611 at 2649.374 kb on + strand, within EX28DRAFT_2611 at 2649.375 kb on - strand, within EX28DRAFT_2611 at 2649.377 kb on - strand, within EX28DRAFT_2611 at 2649.381 kb on - strand, within EX28DRAFT_2611 at 2649.414 kb on + strand, within EX28DRAFT_2611 at 2649.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,646,390 - EX28DRAFT_2609 0.25 +0.1 2,646,390 - EX28DRAFT_2609 0.25 +0.5 2,646,551 + EX28DRAFT_2609 0.39 +0.9 2,646,552 - EX28DRAFT_2609 0.39 +0.3 2,646,552 - EX28DRAFT_2609 0.39 -0.8 2,646,623 + EX28DRAFT_2609 0.46 +0.0 2,646,623 + EX28DRAFT_2609 0.46 -0.2 2,646,623 + EX28DRAFT_2609 0.46 +0.1 2,646,624 - EX28DRAFT_2609 0.46 +0.5 2,646,757 + EX28DRAFT_2609 0.58 +0.3 2,646,991 + EX28DRAFT_2609 0.79 -0.7 2,647,166 - -0.2 2,647,239 + +0.1 2,647,239 + -0.3 2,647,239 + -0.7 2,647,239 + -0.1 2,647,240 - +0.2 2,647,240 - -0.3 2,647,240 - +0.0 2,647,321 - +0.2 2,647,331 + +0.2 2,647,376 + -0.5 2,647,377 - -0.0 2,647,541 + EX28DRAFT_2610 0.11 -0.2 2,647,579 + EX28DRAFT_2610 0.13 -0.7 2,647,579 + EX28DRAFT_2610 0.13 +0.0 2,647,687 + EX28DRAFT_2610 0.19 +0.1 2,647,954 + EX28DRAFT_2610 0.34 -1.4 2,647,954 + EX28DRAFT_2610 0.34 -0.9 2,647,956 + EX28DRAFT_2610 0.34 -1.5 2,647,957 - EX28DRAFT_2610 0.34 +0.6 2,648,004 + EX28DRAFT_2610 0.37 +0.3 2,648,210 - EX28DRAFT_2610 0.48 +0.1 2,648,249 - EX28DRAFT_2610 0.51 -0.1 2,648,429 + EX28DRAFT_2610 0.61 -1.2 2,648,519 - EX28DRAFT_2610 0.66 -0.1 2,648,674 + EX28DRAFT_2610 0.74 -1.5 2,648,934 - EX28DRAFT_2610 0.89 -1.1 2,648,938 + EX28DRAFT_2610 0.89 +0.2 2,648,938 + EX28DRAFT_2610 0.89 +0.1 2,649,156 - +0.2 2,649,189 + EX28DRAFT_2611 0.11 +0.2 2,649,190 - EX28DRAFT_2611 0.12 -0.1 2,649,296 + EX28DRAFT_2611 0.38 +0.0 2,649,297 - EX28DRAFT_2611 0.38 +0.3 2,649,319 + EX28DRAFT_2611 0.43 +0.7 2,649,319 + EX28DRAFT_2611 0.43 +0.2 2,649,319 + EX28DRAFT_2611 0.43 +0.0 2,649,320 - EX28DRAFT_2611 0.44 +1.5 2,649,331 + EX28DRAFT_2611 0.46 -0.1 2,649,366 + EX28DRAFT_2611 0.55 +0.1 2,649,374 + EX28DRAFT_2611 0.57 -0.5 2,649,374 + EX28DRAFT_2611 0.57 +0.3 2,649,374 + EX28DRAFT_2611 0.57 +0.6 2,649,374 + EX28DRAFT_2611 0.57 -0.1 2,649,375 - EX28DRAFT_2611 0.57 -0.5 2,649,377 - EX28DRAFT_2611 0.58 +0.0 2,649,381 - EX28DRAFT_2611 0.59 -0.5 2,649,414 + EX28DRAFT_2611 0.67 +0.2 2,649,547 + -0.2
Or see this region's nucleotide sequence