Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2610

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2609 and EX28DRAFT_2610 are separated by 120 nucleotidesEX28DRAFT_2610 and EX28DRAFT_2611 are separated by 12 nucleotidesEX28DRAFT_2611 and EX28DRAFT_2612 are separated by 123 nucleotides EX28DRAFT_2609: EX28DRAFT_2609 - Predicted permease, at 2,646,116 to 2,647,225 _2609 EX28DRAFT_2610: EX28DRAFT_2610 - diguanylate cyclase (GGDEF) domain, at 2,647,346 to 2,649,130 _2610 EX28DRAFT_2611: EX28DRAFT_2611 - AraC-type DNA-binding domain-containing proteins, at 2,649,143 to 2,649,547 _2611 EX28DRAFT_2612: EX28DRAFT_2612 - transcriptional regulator, TetR family, at 2,649,671 to 2,650,315 _2612 Position (kb) 2647 2648 2649 2650Strain fitness (log2 ratio) -1 0 1at 2646.390 kb on - strand, within EX28DRAFT_2609at 2646.390 kb on - strand, within EX28DRAFT_2609at 2646.551 kb on + strand, within EX28DRAFT_2609at 2646.552 kb on - strand, within EX28DRAFT_2609at 2646.552 kb on - strand, within EX28DRAFT_2609at 2646.623 kb on + strand, within EX28DRAFT_2609at 2646.623 kb on + strand, within EX28DRAFT_2609at 2646.623 kb on + strand, within EX28DRAFT_2609at 2646.624 kb on - strand, within EX28DRAFT_2609at 2646.757 kb on + strand, within EX28DRAFT_2609at 2646.991 kb on + strand, within EX28DRAFT_2609at 2647.166 kb on - strandat 2647.239 kb on + strandat 2647.239 kb on + strandat 2647.239 kb on + strandat 2647.239 kb on + strandat 2647.240 kb on - strandat 2647.240 kb on - strandat 2647.240 kb on - strandat 2647.321 kb on - strandat 2647.331 kb on + strandat 2647.376 kb on + strandat 2647.377 kb on - strandat 2647.541 kb on + strand, within EX28DRAFT_2610at 2647.579 kb on + strand, within EX28DRAFT_2610at 2647.579 kb on + strand, within EX28DRAFT_2610at 2647.687 kb on + strand, within EX28DRAFT_2610at 2647.954 kb on + strand, within EX28DRAFT_2610at 2647.954 kb on + strand, within EX28DRAFT_2610at 2647.956 kb on + strand, within EX28DRAFT_2610at 2647.957 kb on - strand, within EX28DRAFT_2610at 2648.004 kb on + strand, within EX28DRAFT_2610at 2648.210 kb on - strand, within EX28DRAFT_2610at 2648.249 kb on - strand, within EX28DRAFT_2610at 2648.429 kb on + strand, within EX28DRAFT_2610at 2648.519 kb on - strand, within EX28DRAFT_2610at 2648.674 kb on + strand, within EX28DRAFT_2610at 2648.934 kb on - strand, within EX28DRAFT_2610at 2648.938 kb on + strand, within EX28DRAFT_2610at 2648.938 kb on + strand, within EX28DRAFT_2610at 2649.156 kb on - strandat 2649.189 kb on + strand, within EX28DRAFT_2611at 2649.190 kb on - strand, within EX28DRAFT_2611at 2649.296 kb on + strand, within EX28DRAFT_2611at 2649.297 kb on - strand, within EX28DRAFT_2611at 2649.319 kb on + strand, within EX28DRAFT_2611at 2649.319 kb on + strand, within EX28DRAFT_2611at 2649.319 kb on + strand, within EX28DRAFT_2611at 2649.320 kb on - strand, within EX28DRAFT_2611at 2649.331 kb on + strand, within EX28DRAFT_2611at 2649.366 kb on + strand, within EX28DRAFT_2611at 2649.374 kb on + strand, within EX28DRAFT_2611at 2649.374 kb on + strand, within EX28DRAFT_2611at 2649.374 kb on + strand, within EX28DRAFT_2611at 2649.374 kb on + strand, within EX28DRAFT_2611at 2649.375 kb on - strand, within EX28DRAFT_2611at 2649.377 kb on - strand, within EX28DRAFT_2611at 2649.381 kb on - strand, within EX28DRAFT_2611at 2649.414 kb on + strand, within EX28DRAFT_2611at 2649.547 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,646,390 - EX28DRAFT_2609 0.25 +0.1
2,646,390 - EX28DRAFT_2609 0.25 +0.5
2,646,551 + EX28DRAFT_2609 0.39 +0.9
2,646,552 - EX28DRAFT_2609 0.39 +0.3
2,646,552 - EX28DRAFT_2609 0.39 -0.8
2,646,623 + EX28DRAFT_2609 0.46 +0.0
2,646,623 + EX28DRAFT_2609 0.46 -0.2
2,646,623 + EX28DRAFT_2609 0.46 +0.1
2,646,624 - EX28DRAFT_2609 0.46 +0.5
2,646,757 + EX28DRAFT_2609 0.58 +0.3
2,646,991 + EX28DRAFT_2609 0.79 -0.7
2,647,166 - -0.2
2,647,239 + +0.1
2,647,239 + -0.3
2,647,239 + -0.7
2,647,239 + -0.1
2,647,240 - +0.2
2,647,240 - -0.3
2,647,240 - +0.0
2,647,321 - +0.2
2,647,331 + +0.2
2,647,376 + -0.5
2,647,377 - -0.0
2,647,541 + EX28DRAFT_2610 0.11 -0.2
2,647,579 + EX28DRAFT_2610 0.13 -0.7
2,647,579 + EX28DRAFT_2610 0.13 +0.0
2,647,687 + EX28DRAFT_2610 0.19 +0.1
2,647,954 + EX28DRAFT_2610 0.34 -1.4
2,647,954 + EX28DRAFT_2610 0.34 -0.9
2,647,956 + EX28DRAFT_2610 0.34 -1.5
2,647,957 - EX28DRAFT_2610 0.34 +0.6
2,648,004 + EX28DRAFT_2610 0.37 +0.3
2,648,210 - EX28DRAFT_2610 0.48 +0.1
2,648,249 - EX28DRAFT_2610 0.51 -0.1
2,648,429 + EX28DRAFT_2610 0.61 -1.2
2,648,519 - EX28DRAFT_2610 0.66 -0.1
2,648,674 + EX28DRAFT_2610 0.74 -1.5
2,648,934 - EX28DRAFT_2610 0.89 -1.1
2,648,938 + EX28DRAFT_2610 0.89 +0.2
2,648,938 + EX28DRAFT_2610 0.89 +0.1
2,649,156 - +0.2
2,649,189 + EX28DRAFT_2611 0.11 +0.2
2,649,190 - EX28DRAFT_2611 0.12 -0.1
2,649,296 + EX28DRAFT_2611 0.38 +0.0
2,649,297 - EX28DRAFT_2611 0.38 +0.3
2,649,319 + EX28DRAFT_2611 0.43 +0.7
2,649,319 + EX28DRAFT_2611 0.43 +0.2
2,649,319 + EX28DRAFT_2611 0.43 +0.0
2,649,320 - EX28DRAFT_2611 0.44 +1.5
2,649,331 + EX28DRAFT_2611 0.46 -0.1
2,649,366 + EX28DRAFT_2611 0.55 +0.1
2,649,374 + EX28DRAFT_2611 0.57 -0.5
2,649,374 + EX28DRAFT_2611 0.57 +0.3
2,649,374 + EX28DRAFT_2611 0.57 +0.6
2,649,374 + EX28DRAFT_2611 0.57 -0.1
2,649,375 - EX28DRAFT_2611 0.57 -0.5
2,649,377 - EX28DRAFT_2611 0.58 +0.0
2,649,381 - EX28DRAFT_2611 0.59 -0.5
2,649,414 + EX28DRAFT_2611 0.67 +0.2
2,649,547 + -0.2

Or see this region's nucleotide sequence