Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2592

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2590 and EX28DRAFT_2591 are separated by 168 nucleotidesEX28DRAFT_2591 and EX28DRAFT_2592 are separated by 103 nucleotidesEX28DRAFT_2592 and EX28DRAFT_2593 overlap by 4 nucleotidesEX28DRAFT_2593 and EX28DRAFT_2594 are separated by 249 nucleotidesEX28DRAFT_2594 and EX28DRAFT_2595 overlap by 4 nucleotides EX28DRAFT_2590: EX28DRAFT_2590 - Arabinose efflux permease, at 2,624,551 to 2,625,765 _2590 EX28DRAFT_2591: EX28DRAFT_2591 - Uncharacterized protein conserved in bacteria, at 2,625,934 to 2,626,617 _2591 EX28DRAFT_2592: EX28DRAFT_2592 - D-alanine--D-alanine ligase, at 2,626,721 to 2,627,821 _2592 EX28DRAFT_2593: EX28DRAFT_2593 - Protein of unknown function (DUF2754), at 2,627,818 to 2,628,045 _2593 EX28DRAFT_2594: EX28DRAFT_2594 - Protein of unknown function (DUF2755), at 2,628,295 to 2,628,594 _2594 EX28DRAFT_2595: EX28DRAFT_2595 - Protein of unknown function (DUF1615), at 2,628,591 to 2,629,688 _2595 Position (kb) 2626 2627 2628Strain fitness (log2 ratio) -2 -1 0 1 2at 2625.774 kb on - strandat 2625.866 kb on + strandat 2625.866 kb on + strandat 2625.867 kb on - strandat 2625.925 kb on + strandat 2625.928 kb on + strandat 2625.928 kb on + strandat 2625.994 kb on - strandat 2625.995 kb on + strandat 2625.995 kb on + strandat 2626.482 kb on + strand, within EX28DRAFT_2591at 2626.482 kb on + strand, within EX28DRAFT_2591at 2626.482 kb on + strand, within EX28DRAFT_2591at 2626.482 kb on + strand, within EX28DRAFT_2591at 2626.482 kb on + strand, within EX28DRAFT_2591at 2626.483 kb on - strand, within EX28DRAFT_2591at 2626.483 kb on - strand, within EX28DRAFT_2591at 2626.483 kb on - strand, within EX28DRAFT_2591at 2626.483 kb on - strand, within EX28DRAFT_2591at 2626.484 kb on + strand, within EX28DRAFT_2591at 2626.485 kb on - strand, within EX28DRAFT_2591at 2626.495 kb on - strand, within EX28DRAFT_2591at 2626.528 kb on - strand, within EX28DRAFT_2591at 2626.539 kb on - strand, within EX28DRAFT_2591at 2626.539 kb on - strand, within EX28DRAFT_2591at 2626.540 kb on - strand, within EX28DRAFT_2591at 2626.541 kb on + strand, within EX28DRAFT_2591at 2626.683 kb on + strandat 2626.683 kb on + strandat 2626.683 kb on + strandat 2626.684 kb on - strandat 2626.684 kb on - strandat 2626.684 kb on - strandat 2626.689 kb on - strandat 2626.689 kb on - strandat 2626.727 kb on - strandat 2626.741 kb on + strandat 2626.742 kb on - strandat 2626.852 kb on + strand, within EX28DRAFT_2592at 2627.369 kb on - strand, within EX28DRAFT_2592at 2627.389 kb on + strand, within EX28DRAFT_2592at 2627.393 kb on - strand, within EX28DRAFT_2592at 2627.393 kb on - strand, within EX28DRAFT_2592at 2627.466 kb on + strand, within EX28DRAFT_2592at 2627.467 kb on - strand, within EX28DRAFT_2592at 2627.467 kb on - strand, within EX28DRAFT_2592at 2627.487 kb on - strand, within EX28DRAFT_2592at 2627.498 kb on + strand, within EX28DRAFT_2592at 2627.498 kb on + strand, within EX28DRAFT_2592at 2627.498 kb on + strand, within EX28DRAFT_2592at 2627.499 kb on - strand, within EX28DRAFT_2592at 2627.499 kb on - strand, within EX28DRAFT_2592at 2627.499 kb on - strand, within EX28DRAFT_2592at 2627.560 kb on + strand, within EX28DRAFT_2592at 2627.690 kb on - strand, within EX28DRAFT_2592at 2627.924 kb on + strand, within EX28DRAFT_2593at 2627.925 kb on - strand, within EX28DRAFT_2593at 2627.925 kb on - strand, within EX28DRAFT_2593at 2627.925 kb on - strand, within EX28DRAFT_2593at 2627.973 kb on + strand, within EX28DRAFT_2593at 2627.979 kb on + strand, within EX28DRAFT_2593at 2628.005 kb on + strand, within EX28DRAFT_2593at 2628.005 kb on + strand, within EX28DRAFT_2593at 2628.008 kb on + strand, within EX28DRAFT_2593at 2628.141 kb on - strandat 2628.262 kb on + strandat 2628.266 kb on - strandat 2628.278 kb on + strandat 2628.278 kb on + strandat 2628.306 kb on + strandat 2628.306 kb on + strandat 2628.417 kb on + strand, within EX28DRAFT_2594at 2628.417 kb on + strand, within EX28DRAFT_2594at 2628.418 kb on - strand, within EX28DRAFT_2594at 2628.543 kb on + strand, within EX28DRAFT_2594at 2628.544 kb on - strand, within EX28DRAFT_2594at 2628.754 kb on + strand, within EX28DRAFT_2595at 2628.754 kb on + strand, within EX28DRAFT_2595

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,625,774 - +0.9
2,625,866 + -0.1
2,625,866 + -0.3
2,625,867 - +1.2
2,625,925 + -0.5
2,625,928 + -1.0
2,625,928 + +0.1
2,625,994 - +0.2
2,625,995 + -0.3
2,625,995 + -0.1
2,626,482 + EX28DRAFT_2591 0.80 +0.0
2,626,482 + EX28DRAFT_2591 0.80 +0.5
2,626,482 + EX28DRAFT_2591 0.80 -1.5
2,626,482 + EX28DRAFT_2591 0.80 -0.3
2,626,482 + EX28DRAFT_2591 0.80 -0.6
2,626,483 - EX28DRAFT_2591 0.80 -0.1
2,626,483 - EX28DRAFT_2591 0.80 -0.6
2,626,483 - EX28DRAFT_2591 0.80 +0.4
2,626,483 - EX28DRAFT_2591 0.80 -1.9
2,626,484 + EX28DRAFT_2591 0.80 +0.1
2,626,485 - EX28DRAFT_2591 0.81 +0.3
2,626,495 - EX28DRAFT_2591 0.82 +0.6
2,626,528 - EX28DRAFT_2591 0.87 +0.6
2,626,539 - EX28DRAFT_2591 0.88 -0.8
2,626,539 - EX28DRAFT_2591 0.88 -0.1
2,626,540 - EX28DRAFT_2591 0.89 -1.5
2,626,541 + EX28DRAFT_2591 0.89 +0.6
2,626,683 + -0.2
2,626,683 + +0.1
2,626,683 + +0.1
2,626,684 - -0.0
2,626,684 - +0.4
2,626,684 - -0.3
2,626,689 - -0.8
2,626,689 - -0.8
2,626,727 - -0.4
2,626,741 + -0.1
2,626,742 - +0.0
2,626,852 + EX28DRAFT_2592 0.12 -0.1
2,627,369 - EX28DRAFT_2592 0.59 -2.3
2,627,389 + EX28DRAFT_2592 0.61 -1.2
2,627,393 - EX28DRAFT_2592 0.61 -0.0
2,627,393 - EX28DRAFT_2592 0.61 -0.2
2,627,466 + EX28DRAFT_2592 0.68 +0.6
2,627,467 - EX28DRAFT_2592 0.68 -0.5
2,627,467 - EX28DRAFT_2592 0.68 -0.5
2,627,487 - EX28DRAFT_2592 0.70 -1.0
2,627,498 + EX28DRAFT_2592 0.71 -1.4
2,627,498 + EX28DRAFT_2592 0.71 -0.3
2,627,498 + EX28DRAFT_2592 0.71 -0.7
2,627,499 - EX28DRAFT_2592 0.71 -1.5
2,627,499 - EX28DRAFT_2592 0.71 +0.4
2,627,499 - EX28DRAFT_2592 0.71 +0.0
2,627,560 + EX28DRAFT_2592 0.76 +0.0
2,627,690 - EX28DRAFT_2592 0.88 +1.9
2,627,924 + EX28DRAFT_2593 0.46 -0.3
2,627,925 - EX28DRAFT_2593 0.47 +0.4
2,627,925 - EX28DRAFT_2593 0.47 -0.6
2,627,925 - EX28DRAFT_2593 0.47 +1.4
2,627,973 + EX28DRAFT_2593 0.68 +0.2
2,627,979 + EX28DRAFT_2593 0.71 +0.4
2,628,005 + EX28DRAFT_2593 0.82 -0.3
2,628,005 + EX28DRAFT_2593 0.82 +0.5
2,628,008 + EX28DRAFT_2593 0.83 +0.1
2,628,141 - -1.0
2,628,262 + +0.3
2,628,266 - +0.4
2,628,278 + -0.1
2,628,278 + -0.5
2,628,306 + +0.3
2,628,306 + -0.1
2,628,417 + EX28DRAFT_2594 0.41 -0.3
2,628,417 + EX28DRAFT_2594 0.41 -0.4
2,628,418 - EX28DRAFT_2594 0.41 +0.4
2,628,543 + EX28DRAFT_2594 0.83 -0.4
2,628,544 - EX28DRAFT_2594 0.83 +0.5
2,628,754 + EX28DRAFT_2595 0.15 -0.7
2,628,754 + EX28DRAFT_2595 0.15 +0.2

Or see this region's nucleotide sequence