Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2583 and EX28DRAFT_2584 are separated by 143 nucleotides EX28DRAFT_2584 and EX28DRAFT_2585 are separated by 97 nucleotides EX28DRAFT_2585 and EX28DRAFT_2586 are separated by 14 nucleotides
EX28DRAFT_2583: EX28DRAFT_2583 - shikimate kinase (EC 2.7.1.71), at 2,618,901 to 2,619,425
_2583
EX28DRAFT_2584: EX28DRAFT_2584 - Uncharacterized protein conserved in bacteria, at 2,619,569 to 2,620,027
_2584
EX28DRAFT_2585: EX28DRAFT_2585 - pyrroline-5-carboxylate reductase, at 2,620,125 to 2,620,934
_2585
EX28DRAFT_2586: EX28DRAFT_2586 - diguanylate cyclase (GGDEF) domain, at 2,620,949 to 2,622,052
_2586
Position (kb)
2620
2621 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2619.156 kb on - strand, within EX28DRAFT_2583 at 2619.157 kb on + strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.406 kb on - strand at 2619.499 kb on + strand at 2620.028 kb on - strand at 2620.028 kb on - strand at 2620.084 kb on + strand at 2620.107 kb on + strand at 2620.725 kb on + strand, within EX28DRAFT_2585 at 2620.805 kb on + strand, within EX28DRAFT_2585 at 2620.806 kb on - strand, within EX28DRAFT_2585 at 2621.032 kb on - strand at 2621.308 kb on + strand, within EX28DRAFT_2586 at 2621.458 kb on + strand, within EX28DRAFT_2586 at 2621.458 kb on + strand, within EX28DRAFT_2586 at 2621.458 kb on + strand, within EX28DRAFT_2586 at 2621.459 kb on - strand, within EX28DRAFT_2586 at 2621.549 kb on + strand, within EX28DRAFT_2586 at 2621.549 kb on + strand, within EX28DRAFT_2586 at 2621.549 kb on + strand, within EX28DRAFT_2586 at 2621.850 kb on - strand, within EX28DRAFT_2586
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,619,156 - EX28DRAFT_2583 0.49 -0.8 2,619,157 + EX28DRAFT_2583 0.49 -2.0 2,619,158 - EX28DRAFT_2583 0.49 -0.4 2,619,158 - EX28DRAFT_2583 0.49 -0.4 2,619,158 - EX28DRAFT_2583 0.49 +0.2 2,619,158 - EX28DRAFT_2583 0.49 +0.8 2,619,158 - EX28DRAFT_2583 0.49 +0.0 2,619,158 - EX28DRAFT_2583 0.49 +0.7 2,619,406 - +0.5 2,619,499 + +0.0 2,620,028 - +0.7 2,620,028 - +0.1 2,620,084 + +0.1 2,620,107 + +1.0 2,620,725 + EX28DRAFT_2585 0.74 -2.5 2,620,805 + EX28DRAFT_2585 0.84 -3.0 2,620,806 - EX28DRAFT_2585 0.84 -1.7 2,621,032 - -0.2 2,621,308 + EX28DRAFT_2586 0.33 +0.4 2,621,458 + EX28DRAFT_2586 0.46 +1.1 2,621,458 + EX28DRAFT_2586 0.46 +1.0 2,621,458 + EX28DRAFT_2586 0.46 +0.6 2,621,459 - EX28DRAFT_2586 0.46 +0.9 2,621,549 + EX28DRAFT_2586 0.54 -0.7 2,621,549 + EX28DRAFT_2586 0.54 -0.7 2,621,549 + EX28DRAFT_2586 0.54 -0.8 2,621,850 - EX28DRAFT_2586 0.82 -0.5
Or see this region's nucleotide sequence