Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2548

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2546 and EX28DRAFT_2547 overlap by 38 nucleotidesEX28DRAFT_2547 and EX28DRAFT_2548 are separated by 67 nucleotidesEX28DRAFT_2548 and EX28DRAFT_2549 are separated by 191 nucleotidesEX28DRAFT_2549 and EX28DRAFT_2550 are separated by 0 nucleotides EX28DRAFT_2546: EX28DRAFT_2546 - 2-dehydropantoate 2-reductase, at 2,578,572 to 2,579,483 _2546 EX28DRAFT_2547: EX28DRAFT_2547 - DJ-1 family protein, at 2,579,446 to 2,580,036 _2547 EX28DRAFT_2548: EX28DRAFT_2548 - tRNA sulfurtransferase ThiI/thiazole biosynthesis domain, at 2,580,104 to 2,581,552 _2548 EX28DRAFT_2549: EX28DRAFT_2549 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 2,581,744 to 2,581,986 _2549 EX28DRAFT_2550: EX28DRAFT_2550 - Geranylgeranyl pyrophosphate synthase, at 2,581,987 to 2,582,886 _2550 Position (kb) 2580 2581 2582Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2579.234 kb on + strand, within EX28DRAFT_2546at 2579.235 kb on - strand, within EX28DRAFT_2546at 2579.259 kb on + strand, within EX28DRAFT_2546at 2579.260 kb on - strand, within EX28DRAFT_2546at 2579.295 kb on - strand, within EX28DRAFT_2546at 2579.432 kb on + strandat 2579.446 kb on - strandat 2579.446 kb on - strandat 2579.506 kb on - strand, within EX28DRAFT_2547at 2579.980 kb on + strandat 2580.019 kb on + strandat 2580.025 kb on + strandat 2580.025 kb on + strandat 2580.025 kb on + strandat 2580.026 kb on - strandat 2580.028 kb on + strandat 2580.034 kb on + strandat 2580.034 kb on + strandat 2580.034 kb on + strandat 2580.034 kb on + strandat 2580.035 kb on - strandat 2580.035 kb on - strandat 2580.035 kb on - strandat 2580.106 kb on - strandat 2581.014 kb on - strand, within EX28DRAFT_2548at 2581.131 kb on - strand, within EX28DRAFT_2548at 2581.452 kb on - strandat 2581.452 kb on - strandat 2581.452 kb on - strandat 2581.537 kb on + strandat 2581.591 kb on - strandat 2581.643 kb on + strandat 2581.643 kb on + strandat 2581.644 kb on - strandat 2581.644 kb on - strandat 2581.644 kb on - strandat 2581.645 kb on + strandat 2581.726 kb on + strandat 2581.726 kb on + strandat 2581.728 kb on + strandat 2581.728 kb on + strandat 2581.728 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,579,234 + EX28DRAFT_2546 0.73 -1.5
2,579,235 - EX28DRAFT_2546 0.73 -1.3
2,579,259 + EX28DRAFT_2546 0.75 -1.3
2,579,260 - EX28DRAFT_2546 0.75 -1.3
2,579,295 - EX28DRAFT_2546 0.79 -1.9
2,579,432 + -0.7
2,579,446 - -0.4
2,579,446 - -0.1
2,579,506 - EX28DRAFT_2547 0.10 -0.0
2,579,980 + -0.5
2,580,019 + -0.4
2,580,025 + +0.0
2,580,025 + +0.6
2,580,025 + +0.0
2,580,026 - +3.1
2,580,028 + +0.0
2,580,034 + -0.8
2,580,034 + -1.3
2,580,034 + +0.7
2,580,034 + +1.2
2,580,035 - +0.2
2,580,035 - -0.1
2,580,035 - +0.4
2,580,106 - -0.0
2,581,014 - EX28DRAFT_2548 0.63 -3.1
2,581,131 - EX28DRAFT_2548 0.71 -4.9
2,581,452 - -2.8
2,581,452 - -3.3
2,581,452 - -2.0
2,581,537 + -2.4
2,581,591 - +0.4
2,581,643 + -2.0
2,581,643 + -1.4
2,581,644 - -0.8
2,581,644 - -1.0
2,581,644 - +0.0
2,581,645 + +0.5
2,581,726 + -2.0
2,581,726 + -0.3
2,581,728 + -0.8
2,581,728 + -0.5
2,581,728 + -0.1

Or see this region's nucleotide sequence