Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2526

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2525 and EX28DRAFT_2526 are separated by 66 nucleotidesEX28DRAFT_2526 and EX28DRAFT_2527 are separated by 60 nucleotidesEX28DRAFT_2527 and EX28DRAFT_2528 are separated by 99 nucleotides EX28DRAFT_2525: EX28DRAFT_2525 - ABC-type uncharacterized transport system, periplasmic component, at 2,555,863 to 2,557,563 _2525 EX28DRAFT_2526: EX28DRAFT_2526 - queuosine biosynthesis protein QueC, at 2,557,630 to 2,558,325 _2526 EX28DRAFT_2527: EX28DRAFT_2527 - acyl-CoA thioester hydrolase, YbgC/YbaW family, at 2,558,386 to 2,558,784 _2527 EX28DRAFT_2528: EX28DRAFT_2528 - competence protein ComEA helix-hairpin-helix repeat region, at 2,558,884 to 2,559,264 _2528 Position (kb) 2557 2558 2559Strain fitness (log2 ratio) -2 -1 0 1at 2556.893 kb on - strand, within EX28DRAFT_2525at 2556.945 kb on + strand, within EX28DRAFT_2525at 2556.951 kb on + strand, within EX28DRAFT_2525at 2557.059 kb on - strand, within EX28DRAFT_2525at 2557.067 kb on + strand, within EX28DRAFT_2525at 2557.067 kb on + strand, within EX28DRAFT_2525at 2557.067 kb on + strand, within EX28DRAFT_2525at 2557.068 kb on - strand, within EX28DRAFT_2525at 2557.096 kb on + strand, within EX28DRAFT_2525at 2557.144 kb on + strand, within EX28DRAFT_2525at 2557.144 kb on + strand, within EX28DRAFT_2525at 2557.144 kb on + strand, within EX28DRAFT_2525at 2557.144 kb on + strand, within EX28DRAFT_2525at 2557.250 kb on + strand, within EX28DRAFT_2525at 2557.250 kb on + strand, within EX28DRAFT_2525at 2557.272 kb on + strand, within EX28DRAFT_2525at 2557.272 kb on + strand, within EX28DRAFT_2525at 2557.273 kb on - strand, within EX28DRAFT_2525at 2557.389 kb on + strand, within EX28DRAFT_2525at 2557.460 kb on - strandat 2557.460 kb on - strandat 2557.497 kb on + strandat 2557.497 kb on + strandat 2557.497 kb on + strandat 2557.498 kb on - strandat 2557.498 kb on - strandat 2557.499 kb on + strandat 2557.598 kb on + strandat 2557.613 kb on - strandat 2557.674 kb on + strandat 2557.675 kb on - strandat 2557.703 kb on - strand, within EX28DRAFT_2526at 2557.827 kb on - strand, within EX28DRAFT_2526at 2557.863 kb on + strand, within EX28DRAFT_2526at 2557.863 kb on + strand, within EX28DRAFT_2526at 2557.864 kb on - strand, within EX28DRAFT_2526at 2557.864 kb on - strand, within EX28DRAFT_2526at 2557.879 kb on + strand, within EX28DRAFT_2526at 2557.879 kb on + strand, within EX28DRAFT_2526at 2557.880 kb on - strand, within EX28DRAFT_2526at 2557.880 kb on - strand, within EX28DRAFT_2526at 2557.929 kb on + strand, within EX28DRAFT_2526at 2557.957 kb on + strand, within EX28DRAFT_2526at 2557.958 kb on - strand, within EX28DRAFT_2526at 2557.958 kb on - strand, within EX28DRAFT_2526at 2557.958 kb on - strand, within EX28DRAFT_2526at 2557.958 kb on - strand, within EX28DRAFT_2526at 2557.971 kb on - strand, within EX28DRAFT_2526at 2558.194 kb on + strand, within EX28DRAFT_2526at 2558.319 kb on + strandat 2558.320 kb on - strandat 2558.323 kb on + strandat 2558.329 kb on + strandat 2558.527 kb on + strand, within EX28DRAFT_2527at 2558.528 kb on - strand, within EX28DRAFT_2527at 2558.810 kb on + strandat 2558.882 kb on - strandat 2558.885 kb on + strandat 2558.885 kb on + strandat 2558.885 kb on + strandat 2558.886 kb on - strandat 2558.975 kb on + strand, within EX28DRAFT_2528at 2558.975 kb on + strand, within EX28DRAFT_2528at 2559.066 kb on + strand, within EX28DRAFT_2528at 2559.270 kb on + strandat 2559.271 kb on - strandat 2559.271 kb on - strandat 2559.313 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,556,893 - EX28DRAFT_2525 0.61 -0.3
2,556,945 + EX28DRAFT_2525 0.64 -1.1
2,556,951 + EX28DRAFT_2525 0.64 -1.2
2,557,059 - EX28DRAFT_2525 0.70 -0.1
2,557,067 + EX28DRAFT_2525 0.71 +0.1
2,557,067 + EX28DRAFT_2525 0.71 +0.0
2,557,067 + EX28DRAFT_2525 0.71 -1.9
2,557,068 - EX28DRAFT_2525 0.71 -0.0
2,557,096 + EX28DRAFT_2525 0.72 +0.1
2,557,144 + EX28DRAFT_2525 0.75 -2.0
2,557,144 + EX28DRAFT_2525 0.75 -0.7
2,557,144 + EX28DRAFT_2525 0.75 -2.5
2,557,144 + EX28DRAFT_2525 0.75 -0.0
2,557,250 + EX28DRAFT_2525 0.82 -0.3
2,557,250 + EX28DRAFT_2525 0.82 +0.2
2,557,272 + EX28DRAFT_2525 0.83 -0.2
2,557,272 + EX28DRAFT_2525 0.83 -0.1
2,557,273 - EX28DRAFT_2525 0.83 -0.1
2,557,389 + EX28DRAFT_2525 0.90 -0.4
2,557,460 - +0.1
2,557,460 - +0.3
2,557,497 + -2.7
2,557,497 + -1.4
2,557,497 + +0.1
2,557,498 - +0.8
2,557,498 - +0.6
2,557,499 + +0.1
2,557,598 + +0.5
2,557,613 - -0.0
2,557,674 + -0.1
2,557,675 - -0.3
2,557,703 - EX28DRAFT_2526 0.10 -0.2
2,557,827 - EX28DRAFT_2526 0.28 +0.1
2,557,863 + EX28DRAFT_2526 0.33 -1.4
2,557,863 + EX28DRAFT_2526 0.33 -0.0
2,557,864 - EX28DRAFT_2526 0.34 +0.2
2,557,864 - EX28DRAFT_2526 0.34 +0.4
2,557,879 + EX28DRAFT_2526 0.36 +1.6
2,557,879 + EX28DRAFT_2526 0.36 +1.0
2,557,880 - EX28DRAFT_2526 0.36 +0.4
2,557,880 - EX28DRAFT_2526 0.36 -0.1
2,557,929 + EX28DRAFT_2526 0.43 -0.0
2,557,957 + EX28DRAFT_2526 0.47 -0.3
2,557,958 - EX28DRAFT_2526 0.47 -0.4
2,557,958 - EX28DRAFT_2526 0.47 +0.0
2,557,958 - EX28DRAFT_2526 0.47 -0.0
2,557,958 - EX28DRAFT_2526 0.47 +0.0
2,557,971 - EX28DRAFT_2526 0.49 +0.8
2,558,194 + EX28DRAFT_2526 0.81 +0.3
2,558,319 + -1.0
2,558,320 - +0.7
2,558,323 + +0.5
2,558,329 + -0.4
2,558,527 + EX28DRAFT_2527 0.35 -0.7
2,558,528 - EX28DRAFT_2527 0.36 -0.5
2,558,810 + -0.4
2,558,882 - +0.1
2,558,885 + +0.6
2,558,885 + +0.9
2,558,885 + +0.0
2,558,886 - -0.9
2,558,975 + EX28DRAFT_2528 0.24 +0.5
2,558,975 + EX28DRAFT_2528 0.24 +0.2
2,559,066 + EX28DRAFT_2528 0.48 +0.3
2,559,270 + +0.2
2,559,271 - +0.7
2,559,271 - +0.7
2,559,313 + -0.1

Or see this region's nucleotide sequence