Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2499 and EX28DRAFT_2500 are separated by 117 nucleotides EX28DRAFT_2500 and EX28DRAFT_2501 overlap by 29 nucleotides EX28DRAFT_2501 and EX28DRAFT_2502 are separated by 101 nucleotides EX28DRAFT_2502 and EX28DRAFT_2503 overlap by 4 nucleotides EX28DRAFT_2503 and EX28DRAFT_2504 are separated by 2 nucleotides
EX28DRAFT_2499: EX28DRAFT_2499 - Acetyltransferase (isoleucine patch superfamily), at 2,531,427 to 2,531,978
_2499
EX28DRAFT_2500: EX28DRAFT_2500 - Inner membrane protein YlaC, at 2,532,096 to 2,532,563
_2500
EX28DRAFT_2501: EX28DRAFT_2501 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 2,532,535 to 2,533,995
_2501
EX28DRAFT_2502: EX28DRAFT_2502 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 2,534,097 to 2,534,807
_2502
EX28DRAFT_2503: EX28DRAFT_2503 - ribosomal protein L36, bacterial type, at 2,534,804 to 2,534,944
_2503
EX28DRAFT_2504: EX28DRAFT_2504 - ribosomal protein L31, at 2,534,947 to 2,535,207
_2504
Position (kb)
2532
2533
2534 Strain fitness (log2 ratio)
-1
0
1
2 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.607 kb on + strand, within EX28DRAFT_2499 at 2531.608 kb on - strand, within EX28DRAFT_2499 at 2531.608 kb on - strand, within EX28DRAFT_2499 at 2531.609 kb on + strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.610 kb on - strand, within EX28DRAFT_2499 at 2531.611 kb on + strand, within EX28DRAFT_2499 at 2531.612 kb on - strand, within EX28DRAFT_2499 at 2531.612 kb on - strand, within EX28DRAFT_2499 at 2531.635 kb on - strand, within EX28DRAFT_2499 at 2531.643 kb on - strand, within EX28DRAFT_2499 at 2531.643 kb on - strand, within EX28DRAFT_2499 at 2531.650 kb on - strand, within EX28DRAFT_2499 at 2531.747 kb on + strand, within EX28DRAFT_2499 at 2531.747 kb on + strand, within EX28DRAFT_2499 at 2531.751 kb on + strand, within EX28DRAFT_2499 at 2531.751 kb on + strand, within EX28DRAFT_2499 at 2531.752 kb on - strand, within EX28DRAFT_2499 at 2532.023 kb on + strand at 2532.094 kb on + strand at 2532.141 kb on - strand at 2532.176 kb on + strand, within EX28DRAFT_2500 at 2532.182 kb on + strand, within EX28DRAFT_2500 at 2532.182 kb on + strand, within EX28DRAFT_2500 at 2532.183 kb on - strand, within EX28DRAFT_2500 at 2532.183 kb on - strand, within EX28DRAFT_2500 at 2532.222 kb on + strand, within EX28DRAFT_2500 at 2532.222 kb on + strand, within EX28DRAFT_2500 at 2532.223 kb on - strand, within EX28DRAFT_2500 at 2532.362 kb on + strand, within EX28DRAFT_2500 at 2532.417 kb on + strand, within EX28DRAFT_2500 at 2532.446 kb on + strand, within EX28DRAFT_2500 at 2532.525 kb on + strand at 2532.526 kb on - strand at 2532.562 kb on - strand at 2532.562 kb on - strand at 2532.566 kb on - strand at 2532.612 kb on + strand at 2532.613 kb on - strand at 2532.626 kb on - strand at 2532.626 kb on - strand at 2532.662 kb on + strand at 2532.663 kb on - strand at 2532.875 kb on + strand, within EX28DRAFT_2501 at 2533.041 kb on - strand, within EX28DRAFT_2501 at 2533.041 kb on - strand, within EX28DRAFT_2501 at 2533.224 kb on + strand, within EX28DRAFT_2501 at 2533.283 kb on - strand, within EX28DRAFT_2501 at 2533.283 kb on - strand, within EX28DRAFT_2501 at 2533.315 kb on - strand, within EX28DRAFT_2501 at 2533.433 kb on - strand, within EX28DRAFT_2501 at 2533.529 kb on - strand, within EX28DRAFT_2501 at 2533.595 kb on + strand, within EX28DRAFT_2501 at 2533.596 kb on - strand, within EX28DRAFT_2501 at 2533.599 kb on + strand, within EX28DRAFT_2501 at 2533.600 kb on - strand, within EX28DRAFT_2501 at 2533.769 kb on + strand, within EX28DRAFT_2501 at 2533.770 kb on - strand, within EX28DRAFT_2501 at 2533.987 kb on + strand at 2533.988 kb on - strand at 2534.248 kb on - strand, within EX28DRAFT_2502 at 2534.509 kb on - strand, within EX28DRAFT_2502 at 2534.523 kb on + strand, within EX28DRAFT_2502 at 2534.524 kb on - strand, within EX28DRAFT_2502 at 2534.650 kb on + strand, within EX28DRAFT_2502 at 2534.849 kb on - strand, within EX28DRAFT_2503 at 2534.866 kb on - strand, within EX28DRAFT_2503 at 2534.889 kb on - strand, within EX28DRAFT_2503 at 2534.932 kb on + strand at 2534.932 kb on + strand at 2534.933 kb on - strand at 2534.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,531,607 + EX28DRAFT_2499 0.33 +0.4 2,531,607 + EX28DRAFT_2499 0.33 +2.4 2,531,607 + EX28DRAFT_2499 0.33 -0.5 2,531,607 + EX28DRAFT_2499 0.33 +0.6 2,531,608 - EX28DRAFT_2499 0.33 -1.1 2,531,608 - EX28DRAFT_2499 0.33 -0.3 2,531,609 + EX28DRAFT_2499 0.33 -0.2 2,531,610 - EX28DRAFT_2499 0.33 +0.4 2,531,610 - EX28DRAFT_2499 0.33 +0.9 2,531,610 - EX28DRAFT_2499 0.33 -0.0 2,531,610 - EX28DRAFT_2499 0.33 +0.0 2,531,611 + EX28DRAFT_2499 0.33 -0.6 2,531,612 - EX28DRAFT_2499 0.34 -0.4 2,531,612 - EX28DRAFT_2499 0.34 -0.5 2,531,635 - EX28DRAFT_2499 0.38 +0.1 2,531,643 - EX28DRAFT_2499 0.39 +0.0 2,531,643 - EX28DRAFT_2499 0.39 +0.0 2,531,650 - EX28DRAFT_2499 0.40 -0.2 2,531,747 + EX28DRAFT_2499 0.58 -1.1 2,531,747 + EX28DRAFT_2499 0.58 -0.2 2,531,751 + EX28DRAFT_2499 0.59 -0.9 2,531,751 + EX28DRAFT_2499 0.59 -0.1 2,531,752 - EX28DRAFT_2499 0.59 -0.4 2,532,023 + -0.3 2,532,094 + +0.8 2,532,141 - +1.3 2,532,176 + EX28DRAFT_2500 0.17 +0.1 2,532,182 + EX28DRAFT_2500 0.18 -0.4 2,532,182 + EX28DRAFT_2500 0.18 +0.4 2,532,183 - EX28DRAFT_2500 0.19 +0.4 2,532,183 - EX28DRAFT_2500 0.19 +0.6 2,532,222 + EX28DRAFT_2500 0.27 -0.0 2,532,222 + EX28DRAFT_2500 0.27 -0.5 2,532,223 - EX28DRAFT_2500 0.27 +0.3 2,532,362 + EX28DRAFT_2500 0.57 +0.1 2,532,417 + EX28DRAFT_2500 0.69 +0.1 2,532,446 + EX28DRAFT_2500 0.75 -0.3 2,532,525 + -0.7 2,532,526 - +0.3 2,532,562 - -0.4 2,532,562 - -0.2 2,532,566 - +0.1 2,532,612 + -1.0 2,532,613 - +0.1 2,532,626 - +0.9 2,532,626 - +0.2 2,532,662 + +0.0 2,532,663 - +0.4 2,532,875 + EX28DRAFT_2501 0.23 +0.8 2,533,041 - EX28DRAFT_2501 0.35 +0.4 2,533,041 - EX28DRAFT_2501 0.35 -0.2 2,533,224 + EX28DRAFT_2501 0.47 +0.3 2,533,283 - EX28DRAFT_2501 0.51 -0.0 2,533,283 - EX28DRAFT_2501 0.51 +1.3 2,533,315 - EX28DRAFT_2501 0.53 +0.3 2,533,433 - EX28DRAFT_2501 0.61 +0.4 2,533,529 - EX28DRAFT_2501 0.68 +0.3 2,533,595 + EX28DRAFT_2501 0.73 +0.1 2,533,596 - EX28DRAFT_2501 0.73 +0.1 2,533,599 + EX28DRAFT_2501 0.73 +0.6 2,533,600 - EX28DRAFT_2501 0.73 -0.5 2,533,769 + EX28DRAFT_2501 0.84 -0.2 2,533,770 - EX28DRAFT_2501 0.85 +0.3 2,533,987 + -0.0 2,533,988 - +0.1 2,534,248 - EX28DRAFT_2502 0.21 +0.1 2,534,509 - EX28DRAFT_2502 0.58 -0.5 2,534,523 + EX28DRAFT_2502 0.60 +0.0 2,534,524 - EX28DRAFT_2502 0.60 -0.2 2,534,650 + EX28DRAFT_2502 0.78 -0.5 2,534,849 - EX28DRAFT_2503 0.32 +0.0 2,534,866 - EX28DRAFT_2503 0.44 -0.0 2,534,889 - EX28DRAFT_2503 0.60 +0.3 2,534,932 + -0.0 2,534,932 + -1.0 2,534,933 - +0.7 2,534,937 - -0.3
Or see this region's nucleotide sequence