Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2501

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2499 and EX28DRAFT_2500 are separated by 117 nucleotidesEX28DRAFT_2500 and EX28DRAFT_2501 overlap by 29 nucleotidesEX28DRAFT_2501 and EX28DRAFT_2502 are separated by 101 nucleotidesEX28DRAFT_2502 and EX28DRAFT_2503 overlap by 4 nucleotidesEX28DRAFT_2503 and EX28DRAFT_2504 are separated by 2 nucleotides EX28DRAFT_2499: EX28DRAFT_2499 - Acetyltransferase (isoleucine patch superfamily), at 2,531,427 to 2,531,978 _2499 EX28DRAFT_2500: EX28DRAFT_2500 - Inner membrane protein YlaC, at 2,532,096 to 2,532,563 _2500 EX28DRAFT_2501: EX28DRAFT_2501 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 2,532,535 to 2,533,995 _2501 EX28DRAFT_2502: EX28DRAFT_2502 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 2,534,097 to 2,534,807 _2502 EX28DRAFT_2503: EX28DRAFT_2503 - ribosomal protein L36, bacterial type, at 2,534,804 to 2,534,944 _2503 EX28DRAFT_2504: EX28DRAFT_2504 - ribosomal protein L31, at 2,534,947 to 2,535,207 _2504 Position (kb) 2532 2533 2534Strain fitness (log2 ratio) -1 0 1 2at 2531.607 kb on + strand, within EX28DRAFT_2499at 2531.607 kb on + strand, within EX28DRAFT_2499at 2531.607 kb on + strand, within EX28DRAFT_2499at 2531.607 kb on + strand, within EX28DRAFT_2499at 2531.608 kb on - strand, within EX28DRAFT_2499at 2531.608 kb on - strand, within EX28DRAFT_2499at 2531.609 kb on + strand, within EX28DRAFT_2499at 2531.610 kb on - strand, within EX28DRAFT_2499at 2531.610 kb on - strand, within EX28DRAFT_2499at 2531.610 kb on - strand, within EX28DRAFT_2499at 2531.610 kb on - strand, within EX28DRAFT_2499at 2531.611 kb on + strand, within EX28DRAFT_2499at 2531.612 kb on - strand, within EX28DRAFT_2499at 2531.612 kb on - strand, within EX28DRAFT_2499at 2531.635 kb on - strand, within EX28DRAFT_2499at 2531.643 kb on - strand, within EX28DRAFT_2499at 2531.643 kb on - strand, within EX28DRAFT_2499at 2531.650 kb on - strand, within EX28DRAFT_2499at 2531.747 kb on + strand, within EX28DRAFT_2499at 2531.747 kb on + strand, within EX28DRAFT_2499at 2531.751 kb on + strand, within EX28DRAFT_2499at 2531.751 kb on + strand, within EX28DRAFT_2499at 2531.752 kb on - strand, within EX28DRAFT_2499at 2532.023 kb on + strandat 2532.094 kb on + strandat 2532.141 kb on - strandat 2532.176 kb on + strand, within EX28DRAFT_2500at 2532.182 kb on + strand, within EX28DRAFT_2500at 2532.182 kb on + strand, within EX28DRAFT_2500at 2532.183 kb on - strand, within EX28DRAFT_2500at 2532.183 kb on - strand, within EX28DRAFT_2500at 2532.222 kb on + strand, within EX28DRAFT_2500at 2532.222 kb on + strand, within EX28DRAFT_2500at 2532.223 kb on - strand, within EX28DRAFT_2500at 2532.362 kb on + strand, within EX28DRAFT_2500at 2532.417 kb on + strand, within EX28DRAFT_2500at 2532.446 kb on + strand, within EX28DRAFT_2500at 2532.525 kb on + strandat 2532.526 kb on - strandat 2532.562 kb on - strandat 2532.562 kb on - strandat 2532.566 kb on - strandat 2532.612 kb on + strandat 2532.613 kb on - strandat 2532.626 kb on - strandat 2532.626 kb on - strandat 2532.662 kb on + strandat 2532.663 kb on - strandat 2532.875 kb on + strand, within EX28DRAFT_2501at 2533.041 kb on - strand, within EX28DRAFT_2501at 2533.041 kb on - strand, within EX28DRAFT_2501at 2533.224 kb on + strand, within EX28DRAFT_2501at 2533.283 kb on - strand, within EX28DRAFT_2501at 2533.283 kb on - strand, within EX28DRAFT_2501at 2533.315 kb on - strand, within EX28DRAFT_2501at 2533.433 kb on - strand, within EX28DRAFT_2501at 2533.529 kb on - strand, within EX28DRAFT_2501at 2533.595 kb on + strand, within EX28DRAFT_2501at 2533.596 kb on - strand, within EX28DRAFT_2501at 2533.599 kb on + strand, within EX28DRAFT_2501at 2533.600 kb on - strand, within EX28DRAFT_2501at 2533.769 kb on + strand, within EX28DRAFT_2501at 2533.770 kb on - strand, within EX28DRAFT_2501at 2533.987 kb on + strandat 2533.988 kb on - strandat 2534.248 kb on - strand, within EX28DRAFT_2502at 2534.509 kb on - strand, within EX28DRAFT_2502at 2534.523 kb on + strand, within EX28DRAFT_2502at 2534.524 kb on - strand, within EX28DRAFT_2502at 2534.650 kb on + strand, within EX28DRAFT_2502at 2534.849 kb on - strand, within EX28DRAFT_2503at 2534.866 kb on - strand, within EX28DRAFT_2503at 2534.889 kb on - strand, within EX28DRAFT_2503at 2534.932 kb on + strandat 2534.932 kb on + strandat 2534.933 kb on - strandat 2534.937 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,531,607 + EX28DRAFT_2499 0.33 +0.4
2,531,607 + EX28DRAFT_2499 0.33 +2.4
2,531,607 + EX28DRAFT_2499 0.33 -0.5
2,531,607 + EX28DRAFT_2499 0.33 +0.6
2,531,608 - EX28DRAFT_2499 0.33 -1.1
2,531,608 - EX28DRAFT_2499 0.33 -0.3
2,531,609 + EX28DRAFT_2499 0.33 -0.2
2,531,610 - EX28DRAFT_2499 0.33 +0.4
2,531,610 - EX28DRAFT_2499 0.33 +0.9
2,531,610 - EX28DRAFT_2499 0.33 -0.0
2,531,610 - EX28DRAFT_2499 0.33 +0.0
2,531,611 + EX28DRAFT_2499 0.33 -0.6
2,531,612 - EX28DRAFT_2499 0.34 -0.4
2,531,612 - EX28DRAFT_2499 0.34 -0.5
2,531,635 - EX28DRAFT_2499 0.38 +0.1
2,531,643 - EX28DRAFT_2499 0.39 +0.0
2,531,643 - EX28DRAFT_2499 0.39 +0.0
2,531,650 - EX28DRAFT_2499 0.40 -0.2
2,531,747 + EX28DRAFT_2499 0.58 -1.1
2,531,747 + EX28DRAFT_2499 0.58 -0.2
2,531,751 + EX28DRAFT_2499 0.59 -0.9
2,531,751 + EX28DRAFT_2499 0.59 -0.1
2,531,752 - EX28DRAFT_2499 0.59 -0.4
2,532,023 + -0.3
2,532,094 + +0.8
2,532,141 - +1.3
2,532,176 + EX28DRAFT_2500 0.17 +0.1
2,532,182 + EX28DRAFT_2500 0.18 -0.4
2,532,182 + EX28DRAFT_2500 0.18 +0.4
2,532,183 - EX28DRAFT_2500 0.19 +0.4
2,532,183 - EX28DRAFT_2500 0.19 +0.6
2,532,222 + EX28DRAFT_2500 0.27 -0.0
2,532,222 + EX28DRAFT_2500 0.27 -0.5
2,532,223 - EX28DRAFT_2500 0.27 +0.3
2,532,362 + EX28DRAFT_2500 0.57 +0.1
2,532,417 + EX28DRAFT_2500 0.69 +0.1
2,532,446 + EX28DRAFT_2500 0.75 -0.3
2,532,525 + -0.7
2,532,526 - +0.3
2,532,562 - -0.4
2,532,562 - -0.2
2,532,566 - +0.1
2,532,612 + -1.0
2,532,613 - +0.1
2,532,626 - +0.9
2,532,626 - +0.2
2,532,662 + +0.0
2,532,663 - +0.4
2,532,875 + EX28DRAFT_2501 0.23 +0.8
2,533,041 - EX28DRAFT_2501 0.35 +0.4
2,533,041 - EX28DRAFT_2501 0.35 -0.2
2,533,224 + EX28DRAFT_2501 0.47 +0.3
2,533,283 - EX28DRAFT_2501 0.51 -0.0
2,533,283 - EX28DRAFT_2501 0.51 +1.3
2,533,315 - EX28DRAFT_2501 0.53 +0.3
2,533,433 - EX28DRAFT_2501 0.61 +0.4
2,533,529 - EX28DRAFT_2501 0.68 +0.3
2,533,595 + EX28DRAFT_2501 0.73 +0.1
2,533,596 - EX28DRAFT_2501 0.73 +0.1
2,533,599 + EX28DRAFT_2501 0.73 +0.6
2,533,600 - EX28DRAFT_2501 0.73 -0.5
2,533,769 + EX28DRAFT_2501 0.84 -0.2
2,533,770 - EX28DRAFT_2501 0.85 +0.3
2,533,987 + -0.0
2,533,988 - +0.1
2,534,248 - EX28DRAFT_2502 0.21 +0.1
2,534,509 - EX28DRAFT_2502 0.58 -0.5
2,534,523 + EX28DRAFT_2502 0.60 +0.0
2,534,524 - EX28DRAFT_2502 0.60 -0.2
2,534,650 + EX28DRAFT_2502 0.78 -0.5
2,534,849 - EX28DRAFT_2503 0.32 +0.0
2,534,866 - EX28DRAFT_2503 0.44 -0.0
2,534,889 - EX28DRAFT_2503 0.60 +0.3
2,534,932 + -0.0
2,534,932 + -1.0
2,534,933 - +0.7
2,534,937 - -0.3

Or see this region's nucleotide sequence