Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2445

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2444 and EX28DRAFT_2445 overlap by 8 nucleotidesEX28DRAFT_2445 and EX28DRAFT_2446 are separated by 14 nucleotidesEX28DRAFT_2446 and EX28DRAFT_2447 are separated by 34 nucleotides EX28DRAFT_2444: EX28DRAFT_2444 - P pilus assembly protein, pilin FimA, at 2,474,184 to 2,475,191 _2444 EX28DRAFT_2445: EX28DRAFT_2445 - P pilus assembly protein, porin PapC, at 2,475,184 to 2,477,745 _2445 EX28DRAFT_2446: EX28DRAFT_2446 - P pilus assembly protein, chaperone PapD, at 2,477,760 to 2,478,452 _2446 EX28DRAFT_2447: EX28DRAFT_2447 - P pilus assembly protein, pilin FimA, at 2,478,487 to 2,479,032 _2447 Position (kb) 2475 2476 2477 2478Strain fitness (log2 ratio) -3 -2 -1 0 1at 2474.241 kb on - strandat 2474.406 kb on - strand, within EX28DRAFT_2444at 2474.630 kb on + strand, within EX28DRAFT_2444at 2474.638 kb on + strand, within EX28DRAFT_2444at 2474.639 kb on - strand, within EX28DRAFT_2444at 2474.648 kb on + strand, within EX28DRAFT_2444at 2474.670 kb on - strand, within EX28DRAFT_2444at 2474.681 kb on - strand, within EX28DRAFT_2444at 2474.681 kb on - strand, within EX28DRAFT_2444at 2474.724 kb on - strand, within EX28DRAFT_2444at 2474.741 kb on + strand, within EX28DRAFT_2444at 2474.822 kb on - strand, within EX28DRAFT_2444at 2474.841 kb on + strand, within EX28DRAFT_2444at 2474.885 kb on - strand, within EX28DRAFT_2444at 2474.885 kb on - strand, within EX28DRAFT_2444at 2474.892 kb on - strand, within EX28DRAFT_2444at 2474.892 kb on - strand, within EX28DRAFT_2444at 2474.892 kb on - strand, within EX28DRAFT_2444at 2474.908 kb on + strand, within EX28DRAFT_2444at 2474.947 kb on + strand, within EX28DRAFT_2444at 2474.947 kb on + strand, within EX28DRAFT_2444at 2474.948 kb on - strand, within EX28DRAFT_2444at 2475.068 kb on + strand, within EX28DRAFT_2444at 2475.185 kb on + strandat 2475.205 kb on - strandat 2475.205 kb on - strandat 2475.245 kb on + strandat 2475.245 kb on + strandat 2475.245 kb on + strandat 2475.246 kb on - strandat 2475.323 kb on + strandat 2475.324 kb on - strandat 2475.325 kb on + strandat 2475.325 kb on + strandat 2475.325 kb on + strandat 2475.325 kb on + strandat 2475.326 kb on - strandat 2475.326 kb on - strandat 2475.326 kb on - strandat 2475.326 kb on - strandat 2475.326 kb on - strandat 2475.326 kb on - strandat 2475.557 kb on + strand, within EX28DRAFT_2445at 2475.557 kb on + strand, within EX28DRAFT_2445at 2475.575 kb on + strand, within EX28DRAFT_2445at 2475.576 kb on - strand, within EX28DRAFT_2445at 2475.764 kb on + strand, within EX28DRAFT_2445at 2475.771 kb on - strand, within EX28DRAFT_2445at 2475.791 kb on + strand, within EX28DRAFT_2445at 2475.792 kb on - strand, within EX28DRAFT_2445at 2475.863 kb on + strand, within EX28DRAFT_2445at 2475.863 kb on + strand, within EX28DRAFT_2445at 2475.864 kb on - strand, within EX28DRAFT_2445at 2475.957 kb on - strand, within EX28DRAFT_2445at 2476.182 kb on + strand, within EX28DRAFT_2445at 2476.185 kb on - strand, within EX28DRAFT_2445at 2476.196 kb on + strand, within EX28DRAFT_2445at 2476.242 kb on + strand, within EX28DRAFT_2445at 2476.263 kb on - strand, within EX28DRAFT_2445at 2476.263 kb on - strand, within EX28DRAFT_2445at 2476.352 kb on + strand, within EX28DRAFT_2445at 2476.553 kb on + strand, within EX28DRAFT_2445at 2476.581 kb on - strand, within EX28DRAFT_2445at 2476.638 kb on + strand, within EX28DRAFT_2445at 2476.842 kb on - strand, within EX28DRAFT_2445at 2476.850 kb on + strand, within EX28DRAFT_2445at 2476.854 kb on + strand, within EX28DRAFT_2445at 2476.855 kb on - strand, within EX28DRAFT_2445at 2477.077 kb on - strand, within EX28DRAFT_2445at 2477.136 kb on + strand, within EX28DRAFT_2445at 2477.157 kb on - strand, within EX28DRAFT_2445at 2477.183 kb on + strand, within EX28DRAFT_2445at 2477.184 kb on - strand, within EX28DRAFT_2445at 2477.186 kb on + strand, within EX28DRAFT_2445at 2477.187 kb on - strand, within EX28DRAFT_2445at 2477.187 kb on - strand, within EX28DRAFT_2445at 2477.226 kb on - strand, within EX28DRAFT_2445at 2477.464 kb on - strand, within EX28DRAFT_2445at 2477.466 kb on + strand, within EX28DRAFT_2445at 2477.467 kb on - strand, within EX28DRAFT_2445at 2477.477 kb on - strand, within EX28DRAFT_2445at 2477.929 kb on + strand, within EX28DRAFT_2446at 2477.930 kb on - strand, within EX28DRAFT_2446at 2477.932 kb on + strand, within EX28DRAFT_2446at 2477.932 kb on + strand, within EX28DRAFT_2446at 2477.933 kb on - strand, within EX28DRAFT_2446at 2477.933 kb on - strand, within EX28DRAFT_2446at 2478.128 kb on - strand, within EX28DRAFT_2446at 2478.174 kb on - strand, within EX28DRAFT_2446at 2478.174 kb on - strand, within EX28DRAFT_2446at 2478.174 kb on - strand, within EX28DRAFT_2446at 2478.177 kb on - strand, within EX28DRAFT_2446at 2478.177 kb on - strand, within EX28DRAFT_2446at 2478.280 kb on - strand, within EX28DRAFT_2446at 2478.280 kb on - strand, within EX28DRAFT_2446at 2478.280 kb on - strand, within EX28DRAFT_2446at 2478.438 kb on - strandat 2478.468 kb on - strandat 2478.495 kb on - strandat 2478.505 kb on - strandat 2478.552 kb on + strand, within EX28DRAFT_2447

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,474,241 - -1.2
2,474,406 - EX28DRAFT_2444 0.22 -0.3
2,474,630 + EX28DRAFT_2444 0.44 -0.2
2,474,638 + EX28DRAFT_2444 0.45 -0.3
2,474,639 - EX28DRAFT_2444 0.45 -1.0
2,474,648 + EX28DRAFT_2444 0.46 -0.2
2,474,670 - EX28DRAFT_2444 0.48 -0.3
2,474,681 - EX28DRAFT_2444 0.49 +0.6
2,474,681 - EX28DRAFT_2444 0.49 -0.1
2,474,724 - EX28DRAFT_2444 0.54 -1.5
2,474,741 + EX28DRAFT_2444 0.55 +0.0
2,474,822 - EX28DRAFT_2444 0.63 -0.5
2,474,841 + EX28DRAFT_2444 0.65 +0.0
2,474,885 - EX28DRAFT_2444 0.70 +0.4
2,474,885 - EX28DRAFT_2444 0.70 -1.5
2,474,892 - EX28DRAFT_2444 0.70 +0.3
2,474,892 - EX28DRAFT_2444 0.70 +0.4
2,474,892 - EX28DRAFT_2444 0.70 +0.8
2,474,908 + EX28DRAFT_2444 0.72 +0.1
2,474,947 + EX28DRAFT_2444 0.76 +1.6
2,474,947 + EX28DRAFT_2444 0.76 +0.1
2,474,948 - EX28DRAFT_2444 0.76 -2.9
2,475,068 + EX28DRAFT_2444 0.88 -0.2
2,475,185 + -0.2
2,475,205 - -0.6
2,475,205 - +0.7
2,475,245 + +1.2
2,475,245 + +0.7
2,475,245 + -0.1
2,475,246 - -0.4
2,475,323 + +0.9
2,475,324 - -1.1
2,475,325 + -1.0
2,475,325 + -0.5
2,475,325 + -1.4
2,475,325 + +1.5
2,475,326 - -0.1
2,475,326 - -0.8
2,475,326 - -2.0
2,475,326 - -0.2
2,475,326 - -0.4
2,475,326 - -1.4
2,475,557 + EX28DRAFT_2445 0.15 +0.5
2,475,557 + EX28DRAFT_2445 0.15 +0.3
2,475,575 + EX28DRAFT_2445 0.15 +0.4
2,475,576 - EX28DRAFT_2445 0.15 +0.4
2,475,764 + EX28DRAFT_2445 0.23 -1.4
2,475,771 - EX28DRAFT_2445 0.23 -0.6
2,475,791 + EX28DRAFT_2445 0.24 -0.5
2,475,792 - EX28DRAFT_2445 0.24 -0.7
2,475,863 + EX28DRAFT_2445 0.27 +0.2
2,475,863 + EX28DRAFT_2445 0.27 -0.3
2,475,864 - EX28DRAFT_2445 0.27 -1.2
2,475,957 - EX28DRAFT_2445 0.30 -0.6
2,476,182 + EX28DRAFT_2445 0.39 -0.1
2,476,185 - EX28DRAFT_2445 0.39 +0.4
2,476,196 + EX28DRAFT_2445 0.40 -0.0
2,476,242 + EX28DRAFT_2445 0.41 -0.2
2,476,263 - EX28DRAFT_2445 0.42 +0.0
2,476,263 - EX28DRAFT_2445 0.42 -1.3
2,476,352 + EX28DRAFT_2445 0.46 -0.1
2,476,553 + EX28DRAFT_2445 0.53 +0.0
2,476,581 - EX28DRAFT_2445 0.55 -0.9
2,476,638 + EX28DRAFT_2445 0.57 -0.2
2,476,842 - EX28DRAFT_2445 0.65 -0.5
2,476,850 + EX28DRAFT_2445 0.65 -0.1
2,476,854 + EX28DRAFT_2445 0.65 -0.3
2,476,855 - EX28DRAFT_2445 0.65 +0.1
2,477,077 - EX28DRAFT_2445 0.74 +0.1
2,477,136 + EX28DRAFT_2445 0.76 +0.5
2,477,157 - EX28DRAFT_2445 0.77 +1.0
2,477,183 + EX28DRAFT_2445 0.78 +0.5
2,477,184 - EX28DRAFT_2445 0.78 +0.8
2,477,186 + EX28DRAFT_2445 0.78 +0.3
2,477,187 - EX28DRAFT_2445 0.78 +0.0
2,477,187 - EX28DRAFT_2445 0.78 -0.4
2,477,226 - EX28DRAFT_2445 0.80 -1.0
2,477,464 - EX28DRAFT_2445 0.89 -2.0
2,477,466 + EX28DRAFT_2445 0.89 -0.3
2,477,467 - EX28DRAFT_2445 0.89 -0.0
2,477,477 - EX28DRAFT_2445 0.90 -0.7
2,477,929 + EX28DRAFT_2446 0.24 -1.2
2,477,930 - EX28DRAFT_2446 0.25 -1.7
2,477,932 + EX28DRAFT_2446 0.25 +0.6
2,477,932 + EX28DRAFT_2446 0.25 -0.4
2,477,933 - EX28DRAFT_2446 0.25 +0.0
2,477,933 - EX28DRAFT_2446 0.25 -0.0
2,478,128 - EX28DRAFT_2446 0.53 -1.2
2,478,174 - EX28DRAFT_2446 0.60 -1.1
2,478,174 - EX28DRAFT_2446 0.60 -0.1
2,478,174 - EX28DRAFT_2446 0.60 +0.1
2,478,177 - EX28DRAFT_2446 0.60 -0.2
2,478,177 - EX28DRAFT_2446 0.60 +0.3
2,478,280 - EX28DRAFT_2446 0.75 -1.8
2,478,280 - EX28DRAFT_2446 0.75 +0.3
2,478,280 - EX28DRAFT_2446 0.75 -0.2
2,478,438 - +0.0
2,478,468 - -0.5
2,478,495 - -1.0
2,478,505 - -0.5
2,478,552 + EX28DRAFT_2447 0.12 +0.8

Or see this region's nucleotide sequence