Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2444 and EX28DRAFT_2445 overlap by 8 nucleotides EX28DRAFT_2445 and EX28DRAFT_2446 are separated by 14 nucleotides EX28DRAFT_2446 and EX28DRAFT_2447 are separated by 34 nucleotides
EX28DRAFT_2444: EX28DRAFT_2444 - P pilus assembly protein, pilin FimA, at 2,474,184 to 2,475,191
_2444
EX28DRAFT_2445: EX28DRAFT_2445 - P pilus assembly protein, porin PapC, at 2,475,184 to 2,477,745
_2445
EX28DRAFT_2446: EX28DRAFT_2446 - P pilus assembly protein, chaperone PapD, at 2,477,760 to 2,478,452
_2446
EX28DRAFT_2447: EX28DRAFT_2447 - P pilus assembly protein, pilin FimA, at 2,478,487 to 2,479,032
_2447
Position (kb)
2475
2476
2477
2478 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2474.241 kb on - strand at 2474.406 kb on - strand, within EX28DRAFT_2444 at 2474.630 kb on + strand, within EX28DRAFT_2444 at 2474.638 kb on + strand, within EX28DRAFT_2444 at 2474.639 kb on - strand, within EX28DRAFT_2444 at 2474.648 kb on + strand, within EX28DRAFT_2444 at 2474.670 kb on - strand, within EX28DRAFT_2444 at 2474.681 kb on - strand, within EX28DRAFT_2444 at 2474.681 kb on - strand, within EX28DRAFT_2444 at 2474.724 kb on - strand, within EX28DRAFT_2444 at 2474.741 kb on + strand, within EX28DRAFT_2444 at 2474.822 kb on - strand, within EX28DRAFT_2444 at 2474.841 kb on + strand, within EX28DRAFT_2444 at 2474.885 kb on - strand, within EX28DRAFT_2444 at 2474.885 kb on - strand, within EX28DRAFT_2444 at 2474.892 kb on - strand, within EX28DRAFT_2444 at 2474.892 kb on - strand, within EX28DRAFT_2444 at 2474.892 kb on - strand, within EX28DRAFT_2444 at 2474.908 kb on + strand, within EX28DRAFT_2444 at 2474.947 kb on + strand, within EX28DRAFT_2444 at 2474.947 kb on + strand, within EX28DRAFT_2444 at 2474.948 kb on - strand, within EX28DRAFT_2444 at 2475.068 kb on + strand, within EX28DRAFT_2444 at 2475.185 kb on + strand at 2475.205 kb on - strand at 2475.205 kb on - strand at 2475.245 kb on + strand at 2475.245 kb on + strand at 2475.245 kb on + strand at 2475.246 kb on - strand at 2475.323 kb on + strand at 2475.324 kb on - strand at 2475.325 kb on + strand at 2475.325 kb on + strand at 2475.325 kb on + strand at 2475.325 kb on + strand at 2475.326 kb on - strand at 2475.326 kb on - strand at 2475.326 kb on - strand at 2475.326 kb on - strand at 2475.326 kb on - strand at 2475.326 kb on - strand at 2475.557 kb on + strand, within EX28DRAFT_2445 at 2475.557 kb on + strand, within EX28DRAFT_2445 at 2475.575 kb on + strand, within EX28DRAFT_2445 at 2475.576 kb on - strand, within EX28DRAFT_2445 at 2475.764 kb on + strand, within EX28DRAFT_2445 at 2475.771 kb on - strand, within EX28DRAFT_2445 at 2475.791 kb on + strand, within EX28DRAFT_2445 at 2475.792 kb on - strand, within EX28DRAFT_2445 at 2475.863 kb on + strand, within EX28DRAFT_2445 at 2475.863 kb on + strand, within EX28DRAFT_2445 at 2475.864 kb on - strand, within EX28DRAFT_2445 at 2475.957 kb on - strand, within EX28DRAFT_2445 at 2476.182 kb on + strand, within EX28DRAFT_2445 at 2476.185 kb on - strand, within EX28DRAFT_2445 at 2476.196 kb on + strand, within EX28DRAFT_2445 at 2476.242 kb on + strand, within EX28DRAFT_2445 at 2476.263 kb on - strand, within EX28DRAFT_2445 at 2476.263 kb on - strand, within EX28DRAFT_2445 at 2476.352 kb on + strand, within EX28DRAFT_2445 at 2476.553 kb on + strand, within EX28DRAFT_2445 at 2476.581 kb on - strand, within EX28DRAFT_2445 at 2476.638 kb on + strand, within EX28DRAFT_2445 at 2476.842 kb on - strand, within EX28DRAFT_2445 at 2476.850 kb on + strand, within EX28DRAFT_2445 at 2476.854 kb on + strand, within EX28DRAFT_2445 at 2476.855 kb on - strand, within EX28DRAFT_2445 at 2477.077 kb on - strand, within EX28DRAFT_2445 at 2477.136 kb on + strand, within EX28DRAFT_2445 at 2477.157 kb on - strand, within EX28DRAFT_2445 at 2477.183 kb on + strand, within EX28DRAFT_2445 at 2477.184 kb on - strand, within EX28DRAFT_2445 at 2477.186 kb on + strand, within EX28DRAFT_2445 at 2477.187 kb on - strand, within EX28DRAFT_2445 at 2477.187 kb on - strand, within EX28DRAFT_2445 at 2477.226 kb on - strand, within EX28DRAFT_2445 at 2477.464 kb on - strand, within EX28DRAFT_2445 at 2477.466 kb on + strand, within EX28DRAFT_2445 at 2477.467 kb on - strand, within EX28DRAFT_2445 at 2477.477 kb on - strand, within EX28DRAFT_2445 at 2477.929 kb on + strand, within EX28DRAFT_2446 at 2477.930 kb on - strand, within EX28DRAFT_2446 at 2477.932 kb on + strand, within EX28DRAFT_2446 at 2477.932 kb on + strand, within EX28DRAFT_2446 at 2477.933 kb on - strand, within EX28DRAFT_2446 at 2477.933 kb on - strand, within EX28DRAFT_2446 at 2478.128 kb on - strand, within EX28DRAFT_2446 at 2478.174 kb on - strand, within EX28DRAFT_2446 at 2478.174 kb on - strand, within EX28DRAFT_2446 at 2478.174 kb on - strand, within EX28DRAFT_2446 at 2478.177 kb on - strand, within EX28DRAFT_2446 at 2478.177 kb on - strand, within EX28DRAFT_2446 at 2478.280 kb on - strand, within EX28DRAFT_2446 at 2478.280 kb on - strand, within EX28DRAFT_2446 at 2478.280 kb on - strand, within EX28DRAFT_2446 at 2478.438 kb on - strand at 2478.468 kb on - strand at 2478.495 kb on - strand at 2478.505 kb on - strand at 2478.552 kb on + strand, within EX28DRAFT_2447
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,474,241 - -1.2 2,474,406 - EX28DRAFT_2444 0.22 -0.3 2,474,630 + EX28DRAFT_2444 0.44 -0.2 2,474,638 + EX28DRAFT_2444 0.45 -0.3 2,474,639 - EX28DRAFT_2444 0.45 -1.0 2,474,648 + EX28DRAFT_2444 0.46 -0.2 2,474,670 - EX28DRAFT_2444 0.48 -0.3 2,474,681 - EX28DRAFT_2444 0.49 +0.6 2,474,681 - EX28DRAFT_2444 0.49 -0.1 2,474,724 - EX28DRAFT_2444 0.54 -1.5 2,474,741 + EX28DRAFT_2444 0.55 +0.0 2,474,822 - EX28DRAFT_2444 0.63 -0.5 2,474,841 + EX28DRAFT_2444 0.65 +0.0 2,474,885 - EX28DRAFT_2444 0.70 +0.4 2,474,885 - EX28DRAFT_2444 0.70 -1.5 2,474,892 - EX28DRAFT_2444 0.70 +0.3 2,474,892 - EX28DRAFT_2444 0.70 +0.4 2,474,892 - EX28DRAFT_2444 0.70 +0.8 2,474,908 + EX28DRAFT_2444 0.72 +0.1 2,474,947 + EX28DRAFT_2444 0.76 +1.6 2,474,947 + EX28DRAFT_2444 0.76 +0.1 2,474,948 - EX28DRAFT_2444 0.76 -2.9 2,475,068 + EX28DRAFT_2444 0.88 -0.2 2,475,185 + -0.2 2,475,205 - -0.6 2,475,205 - +0.7 2,475,245 + +1.2 2,475,245 + +0.7 2,475,245 + -0.1 2,475,246 - -0.4 2,475,323 + +0.9 2,475,324 - -1.1 2,475,325 + -1.0 2,475,325 + -0.5 2,475,325 + -1.4 2,475,325 + +1.5 2,475,326 - -0.1 2,475,326 - -0.8 2,475,326 - -2.0 2,475,326 - -0.2 2,475,326 - -0.4 2,475,326 - -1.4 2,475,557 + EX28DRAFT_2445 0.15 +0.5 2,475,557 + EX28DRAFT_2445 0.15 +0.3 2,475,575 + EX28DRAFT_2445 0.15 +0.4 2,475,576 - EX28DRAFT_2445 0.15 +0.4 2,475,764 + EX28DRAFT_2445 0.23 -1.4 2,475,771 - EX28DRAFT_2445 0.23 -0.6 2,475,791 + EX28DRAFT_2445 0.24 -0.5 2,475,792 - EX28DRAFT_2445 0.24 -0.7 2,475,863 + EX28DRAFT_2445 0.27 +0.2 2,475,863 + EX28DRAFT_2445 0.27 -0.3 2,475,864 - EX28DRAFT_2445 0.27 -1.2 2,475,957 - EX28DRAFT_2445 0.30 -0.6 2,476,182 + EX28DRAFT_2445 0.39 -0.1 2,476,185 - EX28DRAFT_2445 0.39 +0.4 2,476,196 + EX28DRAFT_2445 0.40 -0.0 2,476,242 + EX28DRAFT_2445 0.41 -0.2 2,476,263 - EX28DRAFT_2445 0.42 +0.0 2,476,263 - EX28DRAFT_2445 0.42 -1.3 2,476,352 + EX28DRAFT_2445 0.46 -0.1 2,476,553 + EX28DRAFT_2445 0.53 +0.0 2,476,581 - EX28DRAFT_2445 0.55 -0.9 2,476,638 + EX28DRAFT_2445 0.57 -0.2 2,476,842 - EX28DRAFT_2445 0.65 -0.5 2,476,850 + EX28DRAFT_2445 0.65 -0.1 2,476,854 + EX28DRAFT_2445 0.65 -0.3 2,476,855 - EX28DRAFT_2445 0.65 +0.1 2,477,077 - EX28DRAFT_2445 0.74 +0.1 2,477,136 + EX28DRAFT_2445 0.76 +0.5 2,477,157 - EX28DRAFT_2445 0.77 +1.0 2,477,183 + EX28DRAFT_2445 0.78 +0.5 2,477,184 - EX28DRAFT_2445 0.78 +0.8 2,477,186 + EX28DRAFT_2445 0.78 +0.3 2,477,187 - EX28DRAFT_2445 0.78 +0.0 2,477,187 - EX28DRAFT_2445 0.78 -0.4 2,477,226 - EX28DRAFT_2445 0.80 -1.0 2,477,464 - EX28DRAFT_2445 0.89 -2.0 2,477,466 + EX28DRAFT_2445 0.89 -0.3 2,477,467 - EX28DRAFT_2445 0.89 -0.0 2,477,477 - EX28DRAFT_2445 0.90 -0.7 2,477,929 + EX28DRAFT_2446 0.24 -1.2 2,477,930 - EX28DRAFT_2446 0.25 -1.7 2,477,932 + EX28DRAFT_2446 0.25 +0.6 2,477,932 + EX28DRAFT_2446 0.25 -0.4 2,477,933 - EX28DRAFT_2446 0.25 +0.0 2,477,933 - EX28DRAFT_2446 0.25 -0.0 2,478,128 - EX28DRAFT_2446 0.53 -1.2 2,478,174 - EX28DRAFT_2446 0.60 -1.1 2,478,174 - EX28DRAFT_2446 0.60 -0.1 2,478,174 - EX28DRAFT_2446 0.60 +0.1 2,478,177 - EX28DRAFT_2446 0.60 -0.2 2,478,177 - EX28DRAFT_2446 0.60 +0.3 2,478,280 - EX28DRAFT_2446 0.75 -1.8 2,478,280 - EX28DRAFT_2446 0.75 +0.3 2,478,280 - EX28DRAFT_2446 0.75 -0.2 2,478,438 - +0.0 2,478,468 - -0.5 2,478,495 - -1.0 2,478,505 - -0.5 2,478,552 + EX28DRAFT_2447 0.12 +0.8
Or see this region's nucleotide sequence