Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2432 and EX28DRAFT_2433 are separated by 103 nucleotides EX28DRAFT_2433 and EX28DRAFT_2434 are separated by 185 nucleotides EX28DRAFT_2434 and EX28DRAFT_2435 are separated by 149 nucleotides
EX28DRAFT_2432: EX28DRAFT_2432 - Gamma-aminobutyrate permease and related permeases, at 2,461,140 to 2,462,528
_2432
EX28DRAFT_2433: EX28DRAFT_2433 - TonB-dependent siderophore receptor, at 2,462,632 to 2,464,815
_2433
EX28DRAFT_2434: EX28DRAFT_2434 - Protein of unknown function (DUF1471), at 2,465,001 to 2,465,276
_2434
EX28DRAFT_2435: EX28DRAFT_2435 - ABC-type spermidine/putrescine transport systems, ATPase components, at 2,465,426 to 2,466,457
_2435
Position (kb)
2462
2463
2464
2465 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2461.747 kb on + strand, within EX28DRAFT_2432 at 2461.748 kb on - strand, within EX28DRAFT_2432 at 2462.081 kb on + strand, within EX28DRAFT_2432 at 2462.135 kb on - strand, within EX28DRAFT_2432 at 2462.144 kb on - strand, within EX28DRAFT_2432 at 2462.197 kb on + strand, within EX28DRAFT_2432 at 2462.198 kb on - strand, within EX28DRAFT_2432 at 2462.236 kb on + strand, within EX28DRAFT_2432 at 2462.241 kb on - strand, within EX28DRAFT_2432 at 2462.243 kb on - strand, within EX28DRAFT_2432 at 2462.427 kb on + strand at 2462.428 kb on - strand at 2462.436 kb on - strand at 2462.436 kb on - strand at 2462.436 kb on - strand at 2462.533 kb on + strand at 2462.551 kb on - strand at 2462.567 kb on - strand at 2462.586 kb on - strand at 2462.633 kb on + strand at 2462.685 kb on + strand at 2462.687 kb on + strand at 2462.687 kb on + strand at 2462.687 kb on + strand at 2462.687 kb on + strand at 2462.687 kb on + strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.688 kb on - strand at 2462.819 kb on + strand at 2462.820 kb on - strand at 2462.918 kb on + strand, within EX28DRAFT_2433 at 2463.213 kb on + strand, within EX28DRAFT_2433 at 2463.213 kb on + strand, within EX28DRAFT_2433 at 2463.213 kb on + strand, within EX28DRAFT_2433 at 2463.243 kb on - strand, within EX28DRAFT_2433 at 2463.259 kb on - strand, within EX28DRAFT_2433 at 2463.302 kb on + strand, within EX28DRAFT_2433 at 2463.303 kb on - strand, within EX28DRAFT_2433 at 2463.303 kb on - strand, within EX28DRAFT_2433 at 2463.341 kb on + strand, within EX28DRAFT_2433 at 2463.341 kb on + strand, within EX28DRAFT_2433 at 2463.342 kb on - strand, within EX28DRAFT_2433 at 2463.406 kb on - strand, within EX28DRAFT_2433 at 2463.536 kb on + strand, within EX28DRAFT_2433 at 2463.537 kb on - strand, within EX28DRAFT_2433 at 2463.596 kb on + strand, within EX28DRAFT_2433 at 2463.818 kb on + strand, within EX28DRAFT_2433 at 2463.818 kb on + strand, within EX28DRAFT_2433 at 2463.819 kb on - strand, within EX28DRAFT_2433 at 2463.819 kb on - strand, within EX28DRAFT_2433 at 2463.888 kb on - strand, within EX28DRAFT_2433 at 2463.927 kb on + strand, within EX28DRAFT_2433 at 2463.928 kb on - strand, within EX28DRAFT_2433 at 2463.929 kb on + strand, within EX28DRAFT_2433 at 2463.997 kb on - strand, within EX28DRAFT_2433 at 2464.076 kb on + strand, within EX28DRAFT_2433 at 2464.235 kb on + strand, within EX28DRAFT_2433 at 2464.236 kb on - strand, within EX28DRAFT_2433 at 2464.358 kb on - strand, within EX28DRAFT_2433 at 2464.358 kb on - strand, within EX28DRAFT_2433 at 2464.384 kb on + strand, within EX28DRAFT_2433 at 2464.385 kb on - strand, within EX28DRAFT_2433 at 2464.460 kb on + strand, within EX28DRAFT_2433 at 2464.568 kb on + strand, within EX28DRAFT_2433 at 2464.815 kb on + strand at 2464.815 kb on + strand at 2464.819 kb on + strand at 2464.819 kb on + strand at 2464.819 kb on + strand at 2464.820 kb on - strand at 2464.910 kb on - strand at 2464.916 kb on + strand at 2465.014 kb on + strand at 2465.040 kb on - strand, within EX28DRAFT_2434 at 2465.166 kb on - strand, within EX28DRAFT_2434 at 2465.167 kb on + strand, within EX28DRAFT_2434 at 2465.239 kb on - strand, within EX28DRAFT_2434 at 2465.239 kb on - strand, within EX28DRAFT_2434 at 2465.295 kb on + strand at 2465.427 kb on + strand at 2465.504 kb on + strand at 2465.630 kb on + strand, within EX28DRAFT_2435 at 2465.631 kb on - strand, within EX28DRAFT_2435 at 2465.794 kb on - strand, within EX28DRAFT_2435 at 2465.802 kb on + strand, within EX28DRAFT_2435 at 2465.802 kb on + strand, within EX28DRAFT_2435
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,461,747 + EX28DRAFT_2432 0.44 +0.3 2,461,748 - EX28DRAFT_2432 0.44 -0.8 2,462,081 + EX28DRAFT_2432 0.68 +0.3 2,462,135 - EX28DRAFT_2432 0.72 -0.7 2,462,144 - EX28DRAFT_2432 0.72 -2.6 2,462,197 + EX28DRAFT_2432 0.76 -0.0 2,462,198 - EX28DRAFT_2432 0.76 +0.1 2,462,236 + EX28DRAFT_2432 0.79 +0.3 2,462,241 - EX28DRAFT_2432 0.79 +0.8 2,462,243 - EX28DRAFT_2432 0.79 -0.6 2,462,427 + -0.4 2,462,428 - +0.0 2,462,436 - +2.0 2,462,436 - -0.3 2,462,436 - +0.1 2,462,533 + +0.1 2,462,551 - -0.6 2,462,567 - -0.1 2,462,586 - -3.6 2,462,633 + +0.0 2,462,685 + +0.3 2,462,687 + -0.3 2,462,687 + -0.4 2,462,687 + +0.7 2,462,687 + -0.4 2,462,687 + +0.3 2,462,688 - -0.3 2,462,688 - -0.0 2,462,688 - -0.6 2,462,688 - +0.0 2,462,688 - +0.6 2,462,688 - +0.9 2,462,688 - +0.6 2,462,688 - -0.4 2,462,688 - +0.4 2,462,819 + -0.5 2,462,820 - -1.6 2,462,918 + EX28DRAFT_2433 0.13 -0.1 2,463,213 + EX28DRAFT_2433 0.27 +0.7 2,463,213 + EX28DRAFT_2433 0.27 +0.0 2,463,213 + EX28DRAFT_2433 0.27 -0.1 2,463,243 - EX28DRAFT_2433 0.28 -0.2 2,463,259 - EX28DRAFT_2433 0.29 -0.5 2,463,302 + EX28DRAFT_2433 0.31 +0.0 2,463,303 - EX28DRAFT_2433 0.31 +0.9 2,463,303 - EX28DRAFT_2433 0.31 -0.6 2,463,341 + EX28DRAFT_2433 0.32 -0.1 2,463,341 + EX28DRAFT_2433 0.32 +0.1 2,463,342 - EX28DRAFT_2433 0.33 -0.8 2,463,406 - EX28DRAFT_2433 0.35 +0.1 2,463,536 + EX28DRAFT_2433 0.41 -0.3 2,463,537 - EX28DRAFT_2433 0.41 +0.1 2,463,596 + EX28DRAFT_2433 0.44 -0.3 2,463,818 + EX28DRAFT_2433 0.54 +0.3 2,463,818 + EX28DRAFT_2433 0.54 +0.1 2,463,819 - EX28DRAFT_2433 0.54 -0.7 2,463,819 - EX28DRAFT_2433 0.54 +0.0 2,463,888 - EX28DRAFT_2433 0.58 -0.7 2,463,927 + EX28DRAFT_2433 0.59 +0.8 2,463,928 - EX28DRAFT_2433 0.59 -0.3 2,463,929 + EX28DRAFT_2433 0.59 -0.5 2,463,997 - EX28DRAFT_2433 0.62 +0.7 2,464,076 + EX28DRAFT_2433 0.66 -0.8 2,464,235 + EX28DRAFT_2433 0.73 +1.0 2,464,236 - EX28DRAFT_2433 0.73 +0.1 2,464,358 - EX28DRAFT_2433 0.79 -1.0 2,464,358 - EX28DRAFT_2433 0.79 -0.2 2,464,384 + EX28DRAFT_2433 0.80 +0.2 2,464,385 - EX28DRAFT_2433 0.80 -0.5 2,464,460 + EX28DRAFT_2433 0.84 +0.5 2,464,568 + EX28DRAFT_2433 0.89 -0.7 2,464,815 + +0.3 2,464,815 + +0.3 2,464,819 + +0.8 2,464,819 + +0.2 2,464,819 + -1.0 2,464,820 - -0.0 2,464,910 - -0.5 2,464,916 + +2.4 2,465,014 + -1.0 2,465,040 - EX28DRAFT_2434 0.14 -1.4 2,465,166 - EX28DRAFT_2434 0.60 -1.6 2,465,167 + EX28DRAFT_2434 0.60 -0.3 2,465,239 - EX28DRAFT_2434 0.86 -0.2 2,465,239 - EX28DRAFT_2434 0.86 +0.2 2,465,295 + +0.2 2,465,427 + +0.6 2,465,504 + -0.5 2,465,630 + EX28DRAFT_2435 0.20 -0.6 2,465,631 - EX28DRAFT_2435 0.20 +0.1 2,465,794 - EX28DRAFT_2435 0.36 -0.6 2,465,802 + EX28DRAFT_2435 0.36 +0.1 2,465,802 + EX28DRAFT_2435 0.36 -0.3
Or see this region's nucleotide sequence