Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2433

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2432 and EX28DRAFT_2433 are separated by 103 nucleotidesEX28DRAFT_2433 and EX28DRAFT_2434 are separated by 185 nucleotidesEX28DRAFT_2434 and EX28DRAFT_2435 are separated by 149 nucleotides EX28DRAFT_2432: EX28DRAFT_2432 - Gamma-aminobutyrate permease and related permeases, at 2,461,140 to 2,462,528 _2432 EX28DRAFT_2433: EX28DRAFT_2433 - TonB-dependent siderophore receptor, at 2,462,632 to 2,464,815 _2433 EX28DRAFT_2434: EX28DRAFT_2434 - Protein of unknown function (DUF1471), at 2,465,001 to 2,465,276 _2434 EX28DRAFT_2435: EX28DRAFT_2435 - ABC-type spermidine/putrescine transport systems, ATPase components, at 2,465,426 to 2,466,457 _2435 Position (kb) 2462 2463 2464 2465Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2461.747 kb on + strand, within EX28DRAFT_2432at 2461.748 kb on - strand, within EX28DRAFT_2432at 2462.081 kb on + strand, within EX28DRAFT_2432at 2462.135 kb on - strand, within EX28DRAFT_2432at 2462.144 kb on - strand, within EX28DRAFT_2432at 2462.197 kb on + strand, within EX28DRAFT_2432at 2462.198 kb on - strand, within EX28DRAFT_2432at 2462.236 kb on + strand, within EX28DRAFT_2432at 2462.241 kb on - strand, within EX28DRAFT_2432at 2462.243 kb on - strand, within EX28DRAFT_2432at 2462.427 kb on + strandat 2462.428 kb on - strandat 2462.436 kb on - strandat 2462.436 kb on - strandat 2462.436 kb on - strandat 2462.533 kb on + strandat 2462.551 kb on - strandat 2462.567 kb on - strandat 2462.586 kb on - strandat 2462.633 kb on + strandat 2462.685 kb on + strandat 2462.687 kb on + strandat 2462.687 kb on + strandat 2462.687 kb on + strandat 2462.687 kb on + strandat 2462.687 kb on + strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.688 kb on - strandat 2462.819 kb on + strandat 2462.820 kb on - strandat 2462.918 kb on + strand, within EX28DRAFT_2433at 2463.213 kb on + strand, within EX28DRAFT_2433at 2463.213 kb on + strand, within EX28DRAFT_2433at 2463.213 kb on + strand, within EX28DRAFT_2433at 2463.243 kb on - strand, within EX28DRAFT_2433at 2463.259 kb on - strand, within EX28DRAFT_2433at 2463.302 kb on + strand, within EX28DRAFT_2433at 2463.303 kb on - strand, within EX28DRAFT_2433at 2463.303 kb on - strand, within EX28DRAFT_2433at 2463.341 kb on + strand, within EX28DRAFT_2433at 2463.341 kb on + strand, within EX28DRAFT_2433at 2463.342 kb on - strand, within EX28DRAFT_2433at 2463.406 kb on - strand, within EX28DRAFT_2433at 2463.536 kb on + strand, within EX28DRAFT_2433at 2463.537 kb on - strand, within EX28DRAFT_2433at 2463.596 kb on + strand, within EX28DRAFT_2433at 2463.818 kb on + strand, within EX28DRAFT_2433at 2463.818 kb on + strand, within EX28DRAFT_2433at 2463.819 kb on - strand, within EX28DRAFT_2433at 2463.819 kb on - strand, within EX28DRAFT_2433at 2463.888 kb on - strand, within EX28DRAFT_2433at 2463.927 kb on + strand, within EX28DRAFT_2433at 2463.928 kb on - strand, within EX28DRAFT_2433at 2463.929 kb on + strand, within EX28DRAFT_2433at 2463.997 kb on - strand, within EX28DRAFT_2433at 2464.076 kb on + strand, within EX28DRAFT_2433at 2464.235 kb on + strand, within EX28DRAFT_2433at 2464.236 kb on - strand, within EX28DRAFT_2433at 2464.358 kb on - strand, within EX28DRAFT_2433at 2464.358 kb on - strand, within EX28DRAFT_2433at 2464.384 kb on + strand, within EX28DRAFT_2433at 2464.385 kb on - strand, within EX28DRAFT_2433at 2464.460 kb on + strand, within EX28DRAFT_2433at 2464.568 kb on + strand, within EX28DRAFT_2433at 2464.815 kb on + strandat 2464.815 kb on + strandat 2464.819 kb on + strandat 2464.819 kb on + strandat 2464.819 kb on + strandat 2464.820 kb on - strandat 2464.910 kb on - strandat 2464.916 kb on + strandat 2465.014 kb on + strandat 2465.040 kb on - strand, within EX28DRAFT_2434at 2465.166 kb on - strand, within EX28DRAFT_2434at 2465.167 kb on + strand, within EX28DRAFT_2434at 2465.239 kb on - strand, within EX28DRAFT_2434at 2465.239 kb on - strand, within EX28DRAFT_2434at 2465.295 kb on + strandat 2465.427 kb on + strandat 2465.504 kb on + strandat 2465.630 kb on + strand, within EX28DRAFT_2435at 2465.631 kb on - strand, within EX28DRAFT_2435at 2465.794 kb on - strand, within EX28DRAFT_2435at 2465.802 kb on + strand, within EX28DRAFT_2435at 2465.802 kb on + strand, within EX28DRAFT_2435

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,461,747 + EX28DRAFT_2432 0.44 +0.3
2,461,748 - EX28DRAFT_2432 0.44 -0.8
2,462,081 + EX28DRAFT_2432 0.68 +0.3
2,462,135 - EX28DRAFT_2432 0.72 -0.7
2,462,144 - EX28DRAFT_2432 0.72 -2.6
2,462,197 + EX28DRAFT_2432 0.76 -0.0
2,462,198 - EX28DRAFT_2432 0.76 +0.1
2,462,236 + EX28DRAFT_2432 0.79 +0.3
2,462,241 - EX28DRAFT_2432 0.79 +0.8
2,462,243 - EX28DRAFT_2432 0.79 -0.6
2,462,427 + -0.4
2,462,428 - +0.0
2,462,436 - +2.0
2,462,436 - -0.3
2,462,436 - +0.1
2,462,533 + +0.1
2,462,551 - -0.6
2,462,567 - -0.1
2,462,586 - -3.6
2,462,633 + +0.0
2,462,685 + +0.3
2,462,687 + -0.3
2,462,687 + -0.4
2,462,687 + +0.7
2,462,687 + -0.4
2,462,687 + +0.3
2,462,688 - -0.3
2,462,688 - -0.0
2,462,688 - -0.6
2,462,688 - +0.0
2,462,688 - +0.6
2,462,688 - +0.9
2,462,688 - +0.6
2,462,688 - -0.4
2,462,688 - +0.4
2,462,819 + -0.5
2,462,820 - -1.6
2,462,918 + EX28DRAFT_2433 0.13 -0.1
2,463,213 + EX28DRAFT_2433 0.27 +0.7
2,463,213 + EX28DRAFT_2433 0.27 +0.0
2,463,213 + EX28DRAFT_2433 0.27 -0.1
2,463,243 - EX28DRAFT_2433 0.28 -0.2
2,463,259 - EX28DRAFT_2433 0.29 -0.5
2,463,302 + EX28DRAFT_2433 0.31 +0.0
2,463,303 - EX28DRAFT_2433 0.31 +0.9
2,463,303 - EX28DRAFT_2433 0.31 -0.6
2,463,341 + EX28DRAFT_2433 0.32 -0.1
2,463,341 + EX28DRAFT_2433 0.32 +0.1
2,463,342 - EX28DRAFT_2433 0.33 -0.8
2,463,406 - EX28DRAFT_2433 0.35 +0.1
2,463,536 + EX28DRAFT_2433 0.41 -0.3
2,463,537 - EX28DRAFT_2433 0.41 +0.1
2,463,596 + EX28DRAFT_2433 0.44 -0.3
2,463,818 + EX28DRAFT_2433 0.54 +0.3
2,463,818 + EX28DRAFT_2433 0.54 +0.1
2,463,819 - EX28DRAFT_2433 0.54 -0.7
2,463,819 - EX28DRAFT_2433 0.54 +0.0
2,463,888 - EX28DRAFT_2433 0.58 -0.7
2,463,927 + EX28DRAFT_2433 0.59 +0.8
2,463,928 - EX28DRAFT_2433 0.59 -0.3
2,463,929 + EX28DRAFT_2433 0.59 -0.5
2,463,997 - EX28DRAFT_2433 0.62 +0.7
2,464,076 + EX28DRAFT_2433 0.66 -0.8
2,464,235 + EX28DRAFT_2433 0.73 +1.0
2,464,236 - EX28DRAFT_2433 0.73 +0.1
2,464,358 - EX28DRAFT_2433 0.79 -1.0
2,464,358 - EX28DRAFT_2433 0.79 -0.2
2,464,384 + EX28DRAFT_2433 0.80 +0.2
2,464,385 - EX28DRAFT_2433 0.80 -0.5
2,464,460 + EX28DRAFT_2433 0.84 +0.5
2,464,568 + EX28DRAFT_2433 0.89 -0.7
2,464,815 + +0.3
2,464,815 + +0.3
2,464,819 + +0.8
2,464,819 + +0.2
2,464,819 + -1.0
2,464,820 - -0.0
2,464,910 - -0.5
2,464,916 + +2.4
2,465,014 + -1.0
2,465,040 - EX28DRAFT_2434 0.14 -1.4
2,465,166 - EX28DRAFT_2434 0.60 -1.6
2,465,167 + EX28DRAFT_2434 0.60 -0.3
2,465,239 - EX28DRAFT_2434 0.86 -0.2
2,465,239 - EX28DRAFT_2434 0.86 +0.2
2,465,295 + +0.2
2,465,427 + +0.6
2,465,504 + -0.5
2,465,630 + EX28DRAFT_2435 0.20 -0.6
2,465,631 - EX28DRAFT_2435 0.20 +0.1
2,465,794 - EX28DRAFT_2435 0.36 -0.6
2,465,802 + EX28DRAFT_2435 0.36 +0.1
2,465,802 + EX28DRAFT_2435 0.36 -0.3

Or see this region's nucleotide sequence