Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2396 and EX28DRAFT_2397 overlap by 1 nucleotides EX28DRAFT_2397 and EX28DRAFT_2398 overlap by 8 nucleotides EX28DRAFT_2398 and EX28DRAFT_2399 overlap by 14 nucleotides EX28DRAFT_2399 and EX28DRAFT_2400 are separated by 108 nucleotides
EX28DRAFT_2396: EX28DRAFT_2396 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,422,528 to 2,423,541
_2396
EX28DRAFT_2397: EX28DRAFT_2397 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,423,541 to 2,424,374
_2397
EX28DRAFT_2398: EX28DRAFT_2398 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,424,367 to 2,425,203
_2398
EX28DRAFT_2399: EX28DRAFT_2399 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,425,190 to 2,425,894
_2399
EX28DRAFT_2400: EX28DRAFT_2400 - Cold shock proteins, at 2,426,003 to 2,426,476
_2400
Position (kb)
2424
2425
2426 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2423.551 kb on - strand at 2423.561 kb on - strand at 2424.048 kb on + strand, within EX28DRAFT_2397 at 2424.104 kb on + strand, within EX28DRAFT_2397 at 2424.136 kb on + strand, within EX28DRAFT_2397 at 2424.137 kb on - strand, within EX28DRAFT_2397 at 2424.137 kb on - strand, within EX28DRAFT_2397 at 2424.248 kb on + strand, within EX28DRAFT_2397 at 2424.978 kb on - strand, within EX28DRAFT_2398 at 2424.978 kb on - strand, within EX28DRAFT_2398 at 2425.034 kb on - strand, within EX28DRAFT_2398 at 2425.095 kb on + strand, within EX28DRAFT_2398 at 2425.700 kb on - strand, within EX28DRAFT_2399 at 2425.763 kb on + strand, within EX28DRAFT_2399 at 2425.763 kb on + strand, within EX28DRAFT_2399 at 2425.764 kb on - strand, within EX28DRAFT_2399 at 2425.764 kb on - strand, within EX28DRAFT_2399 at 2425.801 kb on + strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2426.008 kb on + strand at 2426.008 kb on + strand at 2426.009 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,423,551 - +0.3 2,423,561 - +0.1 2,424,048 + EX28DRAFT_2397 0.61 -0.1 2,424,104 + EX28DRAFT_2397 0.68 +1.4 2,424,136 + EX28DRAFT_2397 0.71 +0.2 2,424,137 - EX28DRAFT_2397 0.71 -0.3 2,424,137 - EX28DRAFT_2397 0.71 -1.1 2,424,248 + EX28DRAFT_2397 0.85 -2.0 2,424,978 - EX28DRAFT_2398 0.73 -1.0 2,424,978 - EX28DRAFT_2398 0.73 +0.1 2,425,034 - EX28DRAFT_2398 0.80 -0.4 2,425,095 + EX28DRAFT_2398 0.87 -0.0 2,425,700 - EX28DRAFT_2399 0.72 -0.4 2,425,763 + EX28DRAFT_2399 0.81 -0.3 2,425,763 + EX28DRAFT_2399 0.81 +0.2 2,425,764 - EX28DRAFT_2399 0.81 +2.6 2,425,764 - EX28DRAFT_2399 0.81 +0.2 2,425,801 + EX28DRAFT_2399 0.87 +0.2 2,425,802 - EX28DRAFT_2399 0.87 +0.4 2,425,802 - EX28DRAFT_2399 0.87 -0.3 2,425,802 - EX28DRAFT_2399 0.87 +0.0 2,426,008 + +0.3 2,426,008 + -0.1 2,426,009 - +0.5
Or see this region's nucleotide sequence