Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2398

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2396 and EX28DRAFT_2397 overlap by 1 nucleotidesEX28DRAFT_2397 and EX28DRAFT_2398 overlap by 8 nucleotidesEX28DRAFT_2398 and EX28DRAFT_2399 overlap by 14 nucleotidesEX28DRAFT_2399 and EX28DRAFT_2400 are separated by 108 nucleotides EX28DRAFT_2396: EX28DRAFT_2396 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,422,528 to 2,423,541 _2396 EX28DRAFT_2397: EX28DRAFT_2397 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,423,541 to 2,424,374 _2397 EX28DRAFT_2398: EX28DRAFT_2398 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,424,367 to 2,425,203 _2398 EX28DRAFT_2399: EX28DRAFT_2399 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,425,190 to 2,425,894 _2399 EX28DRAFT_2400: EX28DRAFT_2400 - Cold shock proteins, at 2,426,003 to 2,426,476 _2400 Position (kb) 2424 2425 2426Strain fitness (log2 ratio) -2 -1 0 1 2at 2423.551 kb on - strandat 2423.561 kb on - strandat 2424.048 kb on + strand, within EX28DRAFT_2397at 2424.104 kb on + strand, within EX28DRAFT_2397at 2424.136 kb on + strand, within EX28DRAFT_2397at 2424.137 kb on - strand, within EX28DRAFT_2397at 2424.137 kb on - strand, within EX28DRAFT_2397at 2424.248 kb on + strand, within EX28DRAFT_2397at 2424.978 kb on - strand, within EX28DRAFT_2398at 2424.978 kb on - strand, within EX28DRAFT_2398at 2425.034 kb on - strand, within EX28DRAFT_2398at 2425.095 kb on + strand, within EX28DRAFT_2398at 2425.700 kb on - strand, within EX28DRAFT_2399at 2425.763 kb on + strand, within EX28DRAFT_2399at 2425.763 kb on + strand, within EX28DRAFT_2399at 2425.764 kb on - strand, within EX28DRAFT_2399at 2425.764 kb on - strand, within EX28DRAFT_2399at 2425.801 kb on + strand, within EX28DRAFT_2399at 2425.802 kb on - strand, within EX28DRAFT_2399at 2425.802 kb on - strand, within EX28DRAFT_2399at 2425.802 kb on - strand, within EX28DRAFT_2399at 2426.008 kb on + strandat 2426.008 kb on + strandat 2426.009 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
2,423,551 - +0.3
2,423,561 - +0.1
2,424,048 + EX28DRAFT_2397 0.61 -0.1
2,424,104 + EX28DRAFT_2397 0.68 +1.4
2,424,136 + EX28DRAFT_2397 0.71 +0.2
2,424,137 - EX28DRAFT_2397 0.71 -0.3
2,424,137 - EX28DRAFT_2397 0.71 -1.1
2,424,248 + EX28DRAFT_2397 0.85 -2.0
2,424,978 - EX28DRAFT_2398 0.73 -1.0
2,424,978 - EX28DRAFT_2398 0.73 +0.1
2,425,034 - EX28DRAFT_2398 0.80 -0.4
2,425,095 + EX28DRAFT_2398 0.87 -0.0
2,425,700 - EX28DRAFT_2399 0.72 -0.4
2,425,763 + EX28DRAFT_2399 0.81 -0.3
2,425,763 + EX28DRAFT_2399 0.81 +0.2
2,425,764 - EX28DRAFT_2399 0.81 +2.6
2,425,764 - EX28DRAFT_2399 0.81 +0.2
2,425,801 + EX28DRAFT_2399 0.87 +0.2
2,425,802 - EX28DRAFT_2399 0.87 +0.4
2,425,802 - EX28DRAFT_2399 0.87 -0.3
2,425,802 - EX28DRAFT_2399 0.87 +0.0
2,426,008 + +0.3
2,426,008 + -0.1
2,426,009 - +0.5

Or see this region's nucleotide sequence