Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2382

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2380 and EX28DRAFT_2381 overlap by 4 nucleotidesEX28DRAFT_2381 and EX28DRAFT_2382 are separated by 10 nucleotidesEX28DRAFT_2382 and EX28DRAFT_2383 are separated by 68 nucleotides EX28DRAFT_2380: EX28DRAFT_2380 - amino acid adenylation domain, at 2,400,788 to 2,404,645 _2380 EX28DRAFT_2381: EX28DRAFT_2381 - Uncharacterized protein conserved in bacteria, at 2,404,642 to 2,404,854 _2381 EX28DRAFT_2382: EX28DRAFT_2382 - Enterochelin esterase and related enzymes, at 2,404,865 to 2,406,139 _2382 EX28DRAFT_2383: EX28DRAFT_2383 - TonB-dependent siderophore receptor, at 2,406,208 to 2,408,448 _2383 Position (kb) 2404 2405 2406 2407Strain fitness (log2 ratio) -2 -1 0 1at 2404.092 kb on + strand, within EX28DRAFT_2380at 2404.119 kb on + strand, within EX28DRAFT_2380at 2404.419 kb on + strandat 2404.420 kb on - strandat 2404.420 kb on - strandat 2404.554 kb on + strandat 2404.555 kb on - strandat 2404.976 kb on + strandat 2404.977 kb on - strandat 2404.986 kb on + strandat 2405.131 kb on - strand, within EX28DRAFT_2382at 2405.267 kb on + strand, within EX28DRAFT_2382at 2405.267 kb on + strand, within EX28DRAFT_2382at 2405.268 kb on - strand, within EX28DRAFT_2382at 2405.268 kb on - strand, within EX28DRAFT_2382at 2405.342 kb on + strand, within EX28DRAFT_2382at 2405.342 kb on + strand, within EX28DRAFT_2382at 2405.342 kb on + strand, within EX28DRAFT_2382at 2405.363 kb on + strand, within EX28DRAFT_2382at 2405.364 kb on - strand, within EX28DRAFT_2382at 2405.367 kb on + strand, within EX28DRAFT_2382at 2405.368 kb on - strand, within EX28DRAFT_2382at 2405.368 kb on - strand, within EX28DRAFT_2382at 2405.775 kb on - strand, within EX28DRAFT_2382at 2406.065 kb on + strandat 2406.065 kb on + strandat 2406.131 kb on + strandat 2406.132 kb on - strandat 2406.151 kb on + strandat 2406.182 kb on - strandat 2406.191 kb on + strandat 2406.204 kb on + strandat 2406.205 kb on - strandat 2406.213 kb on + strandat 2406.257 kb on - strandat 2406.257 kb on - strandat 2406.348 kb on - strandat 2406.567 kb on + strand, within EX28DRAFT_2383at 2406.757 kb on + strand, within EX28DRAFT_2383at 2406.758 kb on - strand, within EX28DRAFT_2383at 2406.777 kb on + strand, within EX28DRAFT_2383at 2407.111 kb on + strand, within EX28DRAFT_2383at 2407.131 kb on + strand, within EX28DRAFT_2383at 2407.131 kb on + strand, within EX28DRAFT_2383at 2407.132 kb on - strand, within EX28DRAFT_2383

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,404,092 + EX28DRAFT_2380 0.86 +0.1
2,404,119 + EX28DRAFT_2380 0.86 -0.4
2,404,419 + -0.1
2,404,420 - +0.1
2,404,420 - -0.7
2,404,554 + +0.2
2,404,555 - -0.2
2,404,976 + -0.7
2,404,977 - -1.4
2,404,986 + -2.4
2,405,131 - EX28DRAFT_2382 0.21 +0.7
2,405,267 + EX28DRAFT_2382 0.32 +0.7
2,405,267 + EX28DRAFT_2382 0.32 -0.5
2,405,268 - EX28DRAFT_2382 0.32 -0.7
2,405,268 - EX28DRAFT_2382 0.32 -1.8
2,405,342 + EX28DRAFT_2382 0.37 -1.9
2,405,342 + EX28DRAFT_2382 0.37 -0.8
2,405,342 + EX28DRAFT_2382 0.37 -1.4
2,405,363 + EX28DRAFT_2382 0.39 +0.1
2,405,364 - EX28DRAFT_2382 0.39 -1.1
2,405,367 + EX28DRAFT_2382 0.39 -0.5
2,405,368 - EX28DRAFT_2382 0.39 +0.3
2,405,368 - EX28DRAFT_2382 0.39 +0.4
2,405,775 - EX28DRAFT_2382 0.71 +1.2
2,406,065 + -0.7
2,406,065 + -2.5
2,406,131 + +1.3
2,406,132 - +0.0
2,406,151 + -0.5
2,406,182 - -1.0
2,406,191 + -0.6
2,406,204 + -1.0
2,406,205 - -2.3
2,406,213 + -0.2
2,406,257 - +0.0
2,406,257 - -0.6
2,406,348 - -0.4
2,406,567 + EX28DRAFT_2383 0.16 -0.9
2,406,757 + EX28DRAFT_2383 0.24 -1.4
2,406,758 - EX28DRAFT_2383 0.25 -0.3
2,406,777 + EX28DRAFT_2383 0.25 +0.0
2,407,111 + EX28DRAFT_2383 0.40 -1.3
2,407,131 + EX28DRAFT_2383 0.41 -1.5
2,407,131 + EX28DRAFT_2383 0.41 -0.5
2,407,132 - EX28DRAFT_2383 0.41 -0.6

Or see this region's nucleotide sequence