Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2378

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2377 and EX28DRAFT_2378 overlap by 4 nucleotidesEX28DRAFT_2378 and EX28DRAFT_2379 overlap by 4 nucleotidesEX28DRAFT_2379 and EX28DRAFT_2380 are separated by 88 nucleotides EX28DRAFT_2377: EX28DRAFT_2377 - ABC-type Fe3+-siderophore transport system, permease component, at 2,397,909 to 2,398,913 _2377 EX28DRAFT_2378: EX28DRAFT_2378 - ABC-type enterobactin transport system, permease component, at 2,398,910 to 2,399,902 _2378 EX28DRAFT_2379: EX28DRAFT_2379 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 2,399,899 to 2,400,699 _2379 EX28DRAFT_2380: EX28DRAFT_2380 - amino acid adenylation domain, at 2,400,788 to 2,404,645 _2380 Position (kb) 2398 2399 2400Strain fitness (log2 ratio) -2 -1 0 1at 2398.345 kb on + strand, within EX28DRAFT_2377at 2398.346 kb on - strand, within EX28DRAFT_2377at 2398.346 kb on - strand, within EX28DRAFT_2377at 2398.437 kb on + strand, within EX28DRAFT_2377at 2398.648 kb on + strand, within EX28DRAFT_2377at 2398.885 kb on + strandat 2398.933 kb on - strandat 2399.088 kb on + strand, within EX28DRAFT_2378at 2399.392 kb on + strand, within EX28DRAFT_2378at 2399.549 kb on - strand, within EX28DRAFT_2378at 2400.510 kb on - strand, within EX28DRAFT_2379at 2400.619 kb on + strand, within EX28DRAFT_2379at 2400.619 kb on + strand, within EX28DRAFT_2379at 2400.640 kb on - strandat 2400.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,398,345 + EX28DRAFT_2377 0.43 +0.0
2,398,346 - EX28DRAFT_2377 0.43 -0.4
2,398,346 - EX28DRAFT_2377 0.43 -2.5
2,398,437 + EX28DRAFT_2377 0.53 +0.0
2,398,648 + EX28DRAFT_2377 0.74 -0.2
2,398,885 + -0.4
2,398,933 - +0.5
2,399,088 + EX28DRAFT_2378 0.18 -2.2
2,399,392 + EX28DRAFT_2378 0.49 -0.8
2,399,549 - EX28DRAFT_2378 0.64 +1.0
2,400,510 - EX28DRAFT_2379 0.76 -1.4
2,400,619 + EX28DRAFT_2379 0.90 +0.7
2,400,619 + EX28DRAFT_2379 0.90 -0.8
2,400,640 - -0.5
2,400,640 - -1.8

Or see this region's nucleotide sequence