Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2374 and EX28DRAFT_2375 are separated by 188 nucleotides EX28DRAFT_2375 and EX28DRAFT_2376 are separated by 46 nucleotides
EX28DRAFT_2374: EX28DRAFT_2374 - isochorismate synthase (EC 5.4.4.2), at 2,394,183 to 2,395,358
_2374
EX28DRAFT_2375: EX28DRAFT_2375 - ABC-type Fe2+-enterobactin transport system, periplasmic component, at 2,395,547 to 2,396,506
_2375
EX28DRAFT_2376: EX28DRAFT_2376 - Arabinose efflux permease, at 2,396,553 to 2,397,800
_2376
Position (kb)
2395
2396
2397 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2394.668 kb on + strand, within EX28DRAFT_2374 at 2394.690 kb on + strand, within EX28DRAFT_2374 at 2394.690 kb on + strand, within EX28DRAFT_2374 at 2394.690 kb on + strand, within EX28DRAFT_2374 at 2394.691 kb on - strand, within EX28DRAFT_2374 at 2395.037 kb on - strand, within EX28DRAFT_2374 at 2395.269 kb on - strand at 2395.289 kb on + strand at 2395.290 kb on - strand at 2395.290 kb on - strand at 2395.425 kb on - strand at 2395.461 kb on + strand at 2395.461 kb on + strand at 2395.462 kb on - strand at 2395.467 kb on - strand at 2395.585 kb on - strand at 2395.585 kb on - strand at 2395.819 kb on + strand, within EX28DRAFT_2375 at 2395.851 kb on - strand, within EX28DRAFT_2375 at 2396.219 kb on - strand, within EX28DRAFT_2375 at 2396.281 kb on + strand, within EX28DRAFT_2375 at 2396.397 kb on + strand, within EX28DRAFT_2375 at 2396.456 kb on + strand at 2396.460 kb on - strand at 2396.473 kb on - strand at 2396.475 kb on + strand at 2396.475 kb on + strand at 2396.476 kb on - strand at 2396.476 kb on - strand at 2396.500 kb on + strand at 2396.501 kb on - strand at 2396.501 kb on - strand at 2396.501 kb on - strand at 2396.803 kb on + strand, within EX28DRAFT_2376 at 2396.843 kb on + strand, within EX28DRAFT_2376 at 2396.930 kb on + strand, within EX28DRAFT_2376 at 2396.931 kb on - strand, within EX28DRAFT_2376 at 2397.171 kb on + strand, within EX28DRAFT_2376 at 2397.461 kb on - strand, within EX28DRAFT_2376
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,394,668 + EX28DRAFT_2374 0.41 -1.7 2,394,690 + EX28DRAFT_2374 0.43 +0.6 2,394,690 + EX28DRAFT_2374 0.43 -0.3 2,394,690 + EX28DRAFT_2374 0.43 +0.3 2,394,691 - EX28DRAFT_2374 0.43 +0.5 2,395,037 - EX28DRAFT_2374 0.73 +0.2 2,395,269 - +0.4 2,395,289 + -0.8 2,395,290 - -0.7 2,395,290 - +0.2 2,395,425 - +0.3 2,395,461 + +0.2 2,395,461 + -0.2 2,395,462 - -0.0 2,395,467 - -2.3 2,395,585 - +0.0 2,395,585 - -0.1 2,395,819 + EX28DRAFT_2375 0.28 -1.2 2,395,851 - EX28DRAFT_2375 0.32 -3.0 2,396,219 - EX28DRAFT_2375 0.70 -1.1 2,396,281 + EX28DRAFT_2375 0.76 +0.5 2,396,397 + EX28DRAFT_2375 0.89 -1.9 2,396,456 + -0.3 2,396,460 - -0.4 2,396,473 - -1.0 2,396,475 + -0.6 2,396,475 + -0.9 2,396,476 - +0.1 2,396,476 - -0.7 2,396,500 + +0.0 2,396,501 - -0.1 2,396,501 - -1.0 2,396,501 - +0.3 2,396,803 + EX28DRAFT_2376 0.20 +0.3 2,396,843 + EX28DRAFT_2376 0.23 -0.1 2,396,930 + EX28DRAFT_2376 0.30 +1.8 2,396,931 - EX28DRAFT_2376 0.30 -0.1 2,397,171 + EX28DRAFT_2376 0.50 -0.1 2,397,461 - EX28DRAFT_2376 0.73 -0.1
Or see this region's nucleotide sequence