Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2371

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2369 and EX28DRAFT_2370 are separated by 149 nucleotidesEX28DRAFT_2370 and EX28DRAFT_2371 are separated by 1 nucleotidesEX28DRAFT_2371 and EX28DRAFT_2372 overlap by 1 nucleotidesEX28DRAFT_2372 and EX28DRAFT_2373 are separated by 10 nucleotides EX28DRAFT_2369: EX28DRAFT_2369 - Carbon starvation protein, predicted membrane protein, at 2,388,276 to 2,390,381 _2369 EX28DRAFT_2370: EX28DRAFT_2370 - uncharacterized domain 1, at 2,390,531 to 2,390,944 _2370 EX28DRAFT_2371: EX28DRAFT_2371 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 2,390,946 to 2,391,698 _2371 EX28DRAFT_2372: EX28DRAFT_2372 - Isochorismate hydrolase, at 2,391,698 to 2,392,552 _2372 EX28DRAFT_2373: EX28DRAFT_2373 - 2,3-dihydroxybenzoate-AMP ligase, at 2,392,563 to 2,394,173 _2373 Position (kb) 2390 2391 2392Strain fitness (log2 ratio) -2 -1 0 1 2at 2389.982 kb on + strand, within EX28DRAFT_2369at 2390.144 kb on - strand, within EX28DRAFT_2369at 2390.218 kb on + strandat 2390.218 kb on + strandat 2390.218 kb on + strandat 2390.219 kb on - strandat 2390.248 kb on + strandat 2390.314 kb on + strandat 2390.315 kb on - strandat 2390.355 kb on + strandat 2390.355 kb on + strandat 2390.355 kb on + strandat 2390.356 kb on - strandat 2390.356 kb on - strandat 2390.357 kb on + strandat 2390.357 kb on + strandat 2390.357 kb on + strandat 2390.357 kb on + strandat 2390.358 kb on - strandat 2390.358 kb on - strandat 2390.358 kb on - strandat 2390.362 kb on + strandat 2390.381 kb on + strandat 2390.381 kb on + strandat 2390.381 kb on + strandat 2390.382 kb on - strandat 2390.491 kb on + strandat 2390.491 kb on + strandat 2390.548 kb on + strandat 2390.548 kb on + strandat 2390.563 kb on + strandat 2390.862 kb on + strand, within EX28DRAFT_2370at 2390.862 kb on + strand, within EX28DRAFT_2370at 2390.862 kb on + strand, within EX28DRAFT_2370at 2390.863 kb on - strand, within EX28DRAFT_2370at 2390.863 kb on - strand, within EX28DRAFT_2370at 2390.947 kb on + strandat 2391.108 kb on - strand, within EX28DRAFT_2371at 2391.186 kb on - strand, within EX28DRAFT_2371at 2391.186 kb on - strand, within EX28DRAFT_2371at 2391.677 kb on + strandat 2391.978 kb on + strand, within EX28DRAFT_2372at 2391.979 kb on - strand, within EX28DRAFT_2372at 2391.979 kb on - strand, within EX28DRAFT_2372at 2391.979 kb on - strand, within EX28DRAFT_2372at 2392.057 kb on + strand, within EX28DRAFT_2372at 2392.098 kb on + strand, within EX28DRAFT_2372at 2392.100 kb on + strand, within EX28DRAFT_2372at 2392.101 kb on - strand, within EX28DRAFT_2372at 2392.339 kb on + strand, within EX28DRAFT_2372at 2392.431 kb on + strand, within EX28DRAFT_2372at 2392.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,389,982 + EX28DRAFT_2369 0.81 +1.3
2,390,144 - EX28DRAFT_2369 0.89 -0.4
2,390,218 + +0.6
2,390,218 + -1.0
2,390,218 + -0.2
2,390,219 - +0.7
2,390,248 + +0.0
2,390,314 + -1.0
2,390,315 - -0.0
2,390,355 + +0.7
2,390,355 + -0.5
2,390,355 + +1.3
2,390,356 - +0.2
2,390,356 - -0.9
2,390,357 + -1.8
2,390,357 + -0.2
2,390,357 + +0.7
2,390,357 + -0.5
2,390,358 - +0.0
2,390,358 - +0.1
2,390,358 - +0.3
2,390,362 + +0.3
2,390,381 + -0.1
2,390,381 + +0.1
2,390,381 + +0.5
2,390,382 - -0.3
2,390,491 + +0.2
2,390,491 + +0.5
2,390,548 + +0.0
2,390,548 + -0.1
2,390,563 + +0.3
2,390,862 + EX28DRAFT_2370 0.80 -0.4
2,390,862 + EX28DRAFT_2370 0.80 -2.0
2,390,862 + EX28DRAFT_2370 0.80 -0.2
2,390,863 - EX28DRAFT_2370 0.80 -0.2
2,390,863 - EX28DRAFT_2370 0.80 +0.1
2,390,947 + -0.0
2,391,108 - EX28DRAFT_2371 0.22 -1.3
2,391,186 - EX28DRAFT_2371 0.32 -0.3
2,391,186 - EX28DRAFT_2371 0.32 +0.0
2,391,677 + +0.3
2,391,978 + EX28DRAFT_2372 0.33 -0.3
2,391,979 - EX28DRAFT_2372 0.33 -0.4
2,391,979 - EX28DRAFT_2372 0.33 +0.1
2,391,979 - EX28DRAFT_2372 0.33 -0.1
2,392,057 + EX28DRAFT_2372 0.42 -1.6
2,392,098 + EX28DRAFT_2372 0.47 +0.3
2,392,100 + EX28DRAFT_2372 0.47 -0.5
2,392,101 - EX28DRAFT_2372 0.47 +1.1
2,392,339 + EX28DRAFT_2372 0.75 -0.1
2,392,431 + EX28DRAFT_2372 0.86 +0.2
2,392,493 - +2.2

Or see this region's nucleotide sequence