Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2255

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2253 and EX28DRAFT_2254 are separated by 3 nucleotidesEX28DRAFT_2254 and EX28DRAFT_2255 overlap by 4 nucleotidesEX28DRAFT_2255 and EX28DRAFT_2256 are separated by 148 nucleotidesEX28DRAFT_2256 and EX28DRAFT_2257 overlap by 1 nucleotidesEX28DRAFT_2257 and EX28DRAFT_2258 are separated by 14 nucleotides EX28DRAFT_2253: EX28DRAFT_2253 - TolR protein, at 2,274,291 to 2,274,719 _2253 EX28DRAFT_2254: EX28DRAFT_2254 - TolQ protein, at 2,274,723 to 2,275,415 _2254 EX28DRAFT_2255: EX28DRAFT_2255 - tol-pal system-associated acyl-CoA thioesterase, at 2,275,412 to 2,275,816 _2255 EX28DRAFT_2256: EX28DRAFT_2256 - cyd operon protein YbgE, at 2,275,965 to 2,276,255 _2256 EX28DRAFT_2257: EX28DRAFT_2257 - cyd operon protein YbgT, at 2,276,255 to 2,276,368 _2257 EX28DRAFT_2258: EX28DRAFT_2258 - cytochrome d oxidase, subunit II (cydB), at 2,276,383 to 2,277,522 _2258 Position (kb) 2275 2276Strain fitness (log2 ratio) -2 -1 0 1at 2275.464 kb on - strand, within EX28DRAFT_2255at 2275.682 kb on + strand, within EX28DRAFT_2255at 2275.735 kb on - strand, within EX28DRAFT_2255at 2275.735 kb on - strand, within EX28DRAFT_2255at 2275.780 kb on - strandat 2275.780 kb on - strandat 2275.820 kb on - strandat 2275.867 kb on - strandat 2275.867 kb on - strandat 2275.867 kb on - strandat 2275.867 kb on - strandat 2275.868 kb on + strandat 2275.869 kb on - strandat 2275.963 kb on - strandat 2276.096 kb on + strand, within EX28DRAFT_2256at 2276.097 kb on - strand, within EX28DRAFT_2256at 2276.165 kb on + strand, within EX28DRAFT_2256at 2276.166 kb on - strand, within EX28DRAFT_2256at 2276.166 kb on - strand, within EX28DRAFT_2256at 2276.166 kb on - strand, within EX28DRAFT_2256at 2276.182 kb on - strand, within EX28DRAFT_2256at 2276.233 kb on + strandat 2276.234 kb on - strandat 2276.381 kb on - strandat 2276.381 kb on - strandat 2276.385 kb on - strandat 2276.388 kb on - strandat 2276.391 kb on + strandat 2276.498 kb on + strand, within EX28DRAFT_2258at 2276.521 kb on - strand, within EX28DRAFT_2258at 2276.745 kb on + strand, within EX28DRAFT_2258

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,275,464 - EX28DRAFT_2255 0.13 -0.7
2,275,682 + EX28DRAFT_2255 0.67 -1.5
2,275,735 - EX28DRAFT_2255 0.80 +0.2
2,275,735 - EX28DRAFT_2255 0.80 -0.8
2,275,780 - -0.3
2,275,780 - -0.3
2,275,820 - -0.5
2,275,867 - -2.0
2,275,867 - -0.6
2,275,867 - +0.4
2,275,867 - -0.1
2,275,868 + -1.9
2,275,869 - +0.2
2,275,963 - -0.0
2,276,096 + EX28DRAFT_2256 0.45 -0.4
2,276,097 - EX28DRAFT_2256 0.45 -0.2
2,276,165 + EX28DRAFT_2256 0.69 +1.3
2,276,166 - EX28DRAFT_2256 0.69 +0.5
2,276,166 - EX28DRAFT_2256 0.69 -0.4
2,276,166 - EX28DRAFT_2256 0.69 +0.4
2,276,182 - EX28DRAFT_2256 0.75 +0.4
2,276,233 + +0.4
2,276,234 - +0.9
2,276,381 - -0.0
2,276,381 - +0.5
2,276,385 - +1.0
2,276,388 - -0.4
2,276,391 + -0.8
2,276,498 + EX28DRAFT_2258 0.10 +1.4
2,276,521 - EX28DRAFT_2258 0.12 -0.5
2,276,745 + EX28DRAFT_2258 0.32 -0.4

Or see this region's nucleotide sequence