Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2245

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2243 and EX28DRAFT_2244 overlap by 4 nucleotidesEX28DRAFT_2244 and EX28DRAFT_2245 are separated by 22 nucleotidesEX28DRAFT_2245 and EX28DRAFT_2246 are separated by 222 nucleotidesEX28DRAFT_2246 and EX28DRAFT_2247 are separated by 10 nucleotidesEX28DRAFT_2247 and EX28DRAFT_2248 are separated by 41 nucleotidesEX28DRAFT_2248 and EX28DRAFT_2249 are separated by 161 nucleotides EX28DRAFT_2243: EX28DRAFT_2243 - cation diffusion facilitator family transporter, at 2,266,805 to 2,267,743 _2243 EX28DRAFT_2244: EX28DRAFT_2244 - nicotinamide mononucleotide transporter PnuC, at 2,267,740 to 2,268,459 _2244 EX28DRAFT_2245: EX28DRAFT_2245 - quinolinate synthetase (EC 2.5.1.72), at 2,268,482 to 2,269,525 _2245 EX28DRAFT_2246: EX28DRAFT_2246 - tRNA, at 2,269,748 to 2,269,823 _2246 EX28DRAFT_2247: EX28DRAFT_2247 - tRNA, at 2,269,834 to 2,269,909 _2247 EX28DRAFT_2248: EX28DRAFT_2248 - tRNA, at 2,269,951 to 2,270,026 _2248 EX28DRAFT_2249: EX28DRAFT_2249 - tol-pal system protein YbgF, at 2,270,188 to 2,270,982 _2249 Position (kb) 2268 2269 2270Strain fitness (log2 ratio) -3 -2 -1 0 1at 2267.636 kb on + strand, within EX28DRAFT_2243at 2267.636 kb on + strand, within EX28DRAFT_2243at 2267.669 kb on + strandat 2267.670 kb on - strandat 2267.781 kb on + strandat 2267.828 kb on + strand, within EX28DRAFT_2244at 2267.918 kb on + strand, within EX28DRAFT_2244at 2267.919 kb on - strand, within EX28DRAFT_2244at 2268.081 kb on + strand, within EX28DRAFT_2244at 2268.081 kb on + strand, within EX28DRAFT_2244at 2268.082 kb on - strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.083 kb on + strand, within EX28DRAFT_2244at 2268.095 kb on - strand, within EX28DRAFT_2244at 2268.213 kb on - strand, within EX28DRAFT_2244at 2268.258 kb on - strand, within EX28DRAFT_2244at 2268.352 kb on - strand, within EX28DRAFT_2244at 2268.422 kb on - strandat 2268.422 kb on - strandat 2268.423 kb on + strandat 2268.423 kb on + strandat 2268.424 kb on - strandat 2268.424 kb on - strandat 2268.483 kb on + strandat 2268.483 kb on + strandat 2268.483 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.487 kb on + strandat 2268.488 kb on - strandat 2268.492 kb on - strandat 2268.531 kb on - strandat 2268.724 kb on - strand, within EX28DRAFT_2245at 2268.787 kb on + strand, within EX28DRAFT_2245at 2268.975 kb on + strand, within EX28DRAFT_2245at 2268.976 kb on - strand, within EX28DRAFT_2245at 2268.976 kb on - strand, within EX28DRAFT_2245at 2268.976 kb on - strand, within EX28DRAFT_2245at 2269.006 kb on + strand, within EX28DRAFT_2245at 2269.007 kb on - strand, within EX28DRAFT_2245at 2269.199 kb on - strand, within EX28DRAFT_2245at 2269.256 kb on - strand, within EX28DRAFT_2245at 2269.333 kb on + strand, within EX28DRAFT_2245at 2269.380 kb on + strand, within EX28DRAFT_2245at 2269.579 kb on - strandat 2269.628 kb on - strandat 2270.128 kb on + strandat 2270.128 kb on + strandat 2270.137 kb on - strandat 2270.255 kb on - strandat 2270.315 kb on - strand, within EX28DRAFT_2249at 2270.315 kb on - strand, within EX28DRAFT_2249at 2270.401 kb on - strand, within EX28DRAFT_2249at 2270.411 kb on + strand, within EX28DRAFT_2249at 2270.411 kb on + strand, within EX28DRAFT_2249at 2270.411 kb on + strand, within EX28DRAFT_2249at 2270.412 kb on - strand, within EX28DRAFT_2249at 2270.412 kb on - strand, within EX28DRAFT_2249at 2270.412 kb on - strand, within EX28DRAFT_2249at 2270.432 kb on + strand, within EX28DRAFT_2249at 2270.450 kb on + strand, within EX28DRAFT_2249at 2270.466 kb on - strand, within EX28DRAFT_2249

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,267,636 + EX28DRAFT_2243 0.88 +0.5
2,267,636 + EX28DRAFT_2243 0.88 +0.5
2,267,669 + +0.0
2,267,670 - +0.4
2,267,781 + -0.1
2,267,828 + EX28DRAFT_2244 0.12 -1.0
2,267,918 + EX28DRAFT_2244 0.25 -0.3
2,267,919 - EX28DRAFT_2244 0.25 +0.7
2,268,081 + EX28DRAFT_2244 0.47 +0.5
2,268,081 + EX28DRAFT_2244 0.47 +0.5
2,268,082 - EX28DRAFT_2244 0.47 +0.4
2,268,083 + EX28DRAFT_2244 0.48 -0.0
2,268,083 + EX28DRAFT_2244 0.48 -0.3
2,268,083 + EX28DRAFT_2244 0.48 +0.0
2,268,083 + EX28DRAFT_2244 0.48 +0.0
2,268,083 + EX28DRAFT_2244 0.48 -0.7
2,268,083 + EX28DRAFT_2244 0.48 +0.2
2,268,083 + EX28DRAFT_2244 0.48 +0.4
2,268,083 + EX28DRAFT_2244 0.48 -0.2
2,268,095 - EX28DRAFT_2244 0.49 -0.2
2,268,213 - EX28DRAFT_2244 0.66 +1.0
2,268,258 - EX28DRAFT_2244 0.72 -0.7
2,268,352 - EX28DRAFT_2244 0.85 -0.2
2,268,422 - +0.4
2,268,422 - -1.6
2,268,423 + +0.0
2,268,423 + -1.2
2,268,424 - +1.1
2,268,424 - -0.0
2,268,483 + -0.5
2,268,483 + -0.4
2,268,483 + -0.4
2,268,487 + -0.4
2,268,487 + +0.0
2,268,487 + -0.5
2,268,487 + -0.1
2,268,487 + -0.2
2,268,488 - +1.0
2,268,492 - +0.7
2,268,531 - -0.4
2,268,724 - EX28DRAFT_2245 0.23 -1.8
2,268,787 + EX28DRAFT_2245 0.29 -1.1
2,268,975 + EX28DRAFT_2245 0.47 -0.8
2,268,976 - EX28DRAFT_2245 0.47 -1.7
2,268,976 - EX28DRAFT_2245 0.47 -2.3
2,268,976 - EX28DRAFT_2245 0.47 -1.4
2,269,006 + EX28DRAFT_2245 0.50 -1.9
2,269,007 - EX28DRAFT_2245 0.50 -0.7
2,269,199 - EX28DRAFT_2245 0.69 -3.4
2,269,256 - EX28DRAFT_2245 0.74 -2.6
2,269,333 + EX28DRAFT_2245 0.82 -2.7
2,269,380 + EX28DRAFT_2245 0.86 -2.6
2,269,579 - -0.5
2,269,628 - -0.2
2,270,128 + +0.3
2,270,128 + +0.2
2,270,137 - -1.1
2,270,255 - -0.0
2,270,315 - EX28DRAFT_2249 0.16 -0.4
2,270,315 - EX28DRAFT_2249 0.16 +0.5
2,270,401 - EX28DRAFT_2249 0.27 -0.6
2,270,411 + EX28DRAFT_2249 0.28 +1.7
2,270,411 + EX28DRAFT_2249 0.28 +0.3
2,270,411 + EX28DRAFT_2249 0.28 +0.4
2,270,412 - EX28DRAFT_2249 0.28 -0.3
2,270,412 - EX28DRAFT_2249 0.28 -0.0
2,270,412 - EX28DRAFT_2249 0.28 -0.5
2,270,432 + EX28DRAFT_2249 0.31 -0.3
2,270,450 + EX28DRAFT_2249 0.33 +0.6
2,270,466 - EX28DRAFT_2249 0.35 +0.6

Or see this region's nucleotide sequence