Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2145

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2144 and EX28DRAFT_2145 are separated by 288 nucleotidesEX28DRAFT_2145 and EX28DRAFT_2146 are separated by 17 nucleotides EX28DRAFT_2144: EX28DRAFT_2144 - Transcriptional regulators, at 2,165,809 to 2,166,882 _2144 EX28DRAFT_2145: EX28DRAFT_2145 - Sugar phosphate permease, at 2,167,171 to 2,168,472 _2145 EX28DRAFT_2146: EX28DRAFT_2146 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 2,168,490 to 2,170,853 _2146 Position (kb) 2167 2168 2169Strain fitness (log2 ratio) -2 -1 0 1 2at 2166.439 kb on - strand, within EX28DRAFT_2144at 2166.439 kb on - strand, within EX28DRAFT_2144at 2166.705 kb on + strand, within EX28DRAFT_2144at 2166.705 kb on + strand, within EX28DRAFT_2144at 2166.952 kb on - strandat 2166.952 kb on - strandat 2167.034 kb on - strandat 2167.240 kb on + strandat 2167.240 kb on + strandat 2167.259 kb on + strandat 2167.259 kb on + strandat 2167.279 kb on + strandat 2167.279 kb on + strandat 2167.279 kb on + strandat 2167.279 kb on + strandat 2167.280 kb on - strandat 2167.352 kb on - strand, within EX28DRAFT_2145at 2167.385 kb on - strand, within EX28DRAFT_2145at 2167.386 kb on + strand, within EX28DRAFT_2145at 2167.386 kb on + strand, within EX28DRAFT_2145at 2167.387 kb on - strand, within EX28DRAFT_2145at 2167.479 kb on + strand, within EX28DRAFT_2145at 2167.519 kb on - strand, within EX28DRAFT_2145at 2167.675 kb on + strand, within EX28DRAFT_2145at 2167.676 kb on - strand, within EX28DRAFT_2145at 2167.714 kb on - strand, within EX28DRAFT_2145at 2167.765 kb on + strand, within EX28DRAFT_2145at 2167.765 kb on + strand, within EX28DRAFT_2145at 2167.766 kb on - strand, within EX28DRAFT_2145at 2167.766 kb on - strand, within EX28DRAFT_2145at 2167.766 kb on - strand, within EX28DRAFT_2145at 2167.897 kb on + strand, within EX28DRAFT_2145at 2168.077 kb on + strand, within EX28DRAFT_2145at 2168.185 kb on + strand, within EX28DRAFT_2145at 2168.185 kb on + strand, within EX28DRAFT_2145at 2168.185 kb on + strand, within EX28DRAFT_2145at 2168.186 kb on - strand, within EX28DRAFT_2145at 2168.186 kb on - strand, within EX28DRAFT_2145at 2168.188 kb on - strand, within EX28DRAFT_2145at 2168.188 kb on - strand, within EX28DRAFT_2145at 2168.435 kb on + strandat 2168.482 kb on + strandat 2168.482 kb on + strandat 2168.482 kb on + strandat 2168.482 kb on + strandat 2168.482 kb on + strandat 2168.483 kb on - strandat 2168.577 kb on + strandat 2168.578 kb on - strandat 2168.699 kb on + strandat 2168.699 kb on + strandat 2168.699 kb on + strandat 2168.701 kb on + strandat 2168.908 kb on - strand, within EX28DRAFT_2146at 2169.015 kb on + strand, within EX28DRAFT_2146at 2169.051 kb on - strand, within EX28DRAFT_2146at 2169.051 kb on - strand, within EX28DRAFT_2146at 2169.150 kb on + strand, within EX28DRAFT_2146at 2169.150 kb on + strand, within EX28DRAFT_2146at 2169.151 kb on - strand, within EX28DRAFT_2146at 2169.198 kb on + strand, within EX28DRAFT_2146at 2169.199 kb on - strand, within EX28DRAFT_2146at 2169.201 kb on + strand, within EX28DRAFT_2146at 2169.202 kb on - strand, within EX28DRAFT_2146at 2169.442 kb on + strand, within EX28DRAFT_2146at 2169.443 kb on - strand, within EX28DRAFT_2146at 2169.443 kb on - strand, within EX28DRAFT_2146at 2169.447 kb on - strand, within EX28DRAFT_2146at 2169.457 kb on - strand, within EX28DRAFT_2146

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,166,439 - EX28DRAFT_2144 0.59 -0.3
2,166,439 - EX28DRAFT_2144 0.59 -0.4
2,166,705 + EX28DRAFT_2144 0.83 -0.1
2,166,705 + EX28DRAFT_2144 0.83 -0.6
2,166,952 - -0.2
2,166,952 - -0.5
2,167,034 - +0.3
2,167,240 + -0.8
2,167,240 + -0.2
2,167,259 + -0.0
2,167,259 + -0.1
2,167,279 + +2.2
2,167,279 + -0.7
2,167,279 + +0.9
2,167,279 + -0.4
2,167,280 - -0.1
2,167,352 - EX28DRAFT_2145 0.14 -2.4
2,167,385 - EX28DRAFT_2145 0.16 +0.7
2,167,386 + EX28DRAFT_2145 0.17 -1.2
2,167,386 + EX28DRAFT_2145 0.17 -0.0
2,167,387 - EX28DRAFT_2145 0.17 -0.6
2,167,479 + EX28DRAFT_2145 0.24 +0.5
2,167,519 - EX28DRAFT_2145 0.27 -0.4
2,167,675 + EX28DRAFT_2145 0.39 -0.1
2,167,676 - EX28DRAFT_2145 0.39 +0.5
2,167,714 - EX28DRAFT_2145 0.42 +0.8
2,167,765 + EX28DRAFT_2145 0.46 -0.3
2,167,765 + EX28DRAFT_2145 0.46 -2.4
2,167,766 - EX28DRAFT_2145 0.46 -0.3
2,167,766 - EX28DRAFT_2145 0.46 +0.9
2,167,766 - EX28DRAFT_2145 0.46 +0.2
2,167,897 + EX28DRAFT_2145 0.56 +0.1
2,168,077 + EX28DRAFT_2145 0.70 -0.4
2,168,185 + EX28DRAFT_2145 0.78 -1.9
2,168,185 + EX28DRAFT_2145 0.78 -0.3
2,168,185 + EX28DRAFT_2145 0.78 +0.1
2,168,186 - EX28DRAFT_2145 0.78 -0.4
2,168,186 - EX28DRAFT_2145 0.78 -0.8
2,168,188 - EX28DRAFT_2145 0.78 -0.0
2,168,188 - EX28DRAFT_2145 0.78 -0.2
2,168,435 + -0.2
2,168,482 + +0.5
2,168,482 + +0.1
2,168,482 + -2.6
2,168,482 + +1.2
2,168,482 + +0.4
2,168,483 - -1.7
2,168,577 + -1.1
2,168,578 - -0.1
2,168,699 + +1.1
2,168,699 + +1.3
2,168,699 + +0.9
2,168,701 + -0.1
2,168,908 - EX28DRAFT_2146 0.18 +0.4
2,169,015 + EX28DRAFT_2146 0.22 +0.4
2,169,051 - EX28DRAFT_2146 0.24 +0.3
2,169,051 - EX28DRAFT_2146 0.24 +0.9
2,169,150 + EX28DRAFT_2146 0.28 -0.5
2,169,150 + EX28DRAFT_2146 0.28 +0.4
2,169,151 - EX28DRAFT_2146 0.28 +0.2
2,169,198 + EX28DRAFT_2146 0.30 +0.2
2,169,199 - EX28DRAFT_2146 0.30 -0.7
2,169,201 + EX28DRAFT_2146 0.30 -0.0
2,169,202 - EX28DRAFT_2146 0.30 -0.9
2,169,442 + EX28DRAFT_2146 0.40 +1.4
2,169,443 - EX28DRAFT_2146 0.40 +0.1
2,169,443 - EX28DRAFT_2146 0.40 +1.1
2,169,447 - EX28DRAFT_2146 0.40 +0.1
2,169,457 - EX28DRAFT_2146 0.41 +0.2

Or see this region's nucleotide sequence