Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2144 and EX28DRAFT_2145 are separated by 288 nucleotides EX28DRAFT_2145 and EX28DRAFT_2146 are separated by 17 nucleotides
EX28DRAFT_2144: EX28DRAFT_2144 - Transcriptional regulators, at 2,165,809 to 2,166,882
_2144
EX28DRAFT_2145: EX28DRAFT_2145 - Sugar phosphate permease, at 2,167,171 to 2,168,472
_2145
EX28DRAFT_2146: EX28DRAFT_2146 - Alpha-glucosidases, family 31 of glycosyl hydrolases, at 2,168,490 to 2,170,853
_2146
Position (kb)
2167
2168
2169 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2166.439 kb on - strand, within EX28DRAFT_2144 at 2166.439 kb on - strand, within EX28DRAFT_2144 at 2166.705 kb on + strand, within EX28DRAFT_2144 at 2166.705 kb on + strand, within EX28DRAFT_2144 at 2166.952 kb on - strand at 2166.952 kb on - strand at 2167.034 kb on - strand at 2167.240 kb on + strand at 2167.240 kb on + strand at 2167.259 kb on + strand at 2167.259 kb on + strand at 2167.279 kb on + strand at 2167.279 kb on + strand at 2167.279 kb on + strand at 2167.279 kb on + strand at 2167.280 kb on - strand at 2167.352 kb on - strand, within EX28DRAFT_2145 at 2167.385 kb on - strand, within EX28DRAFT_2145 at 2167.386 kb on + strand, within EX28DRAFT_2145 at 2167.386 kb on + strand, within EX28DRAFT_2145 at 2167.387 kb on - strand, within EX28DRAFT_2145 at 2167.479 kb on + strand, within EX28DRAFT_2145 at 2167.519 kb on - strand, within EX28DRAFT_2145 at 2167.675 kb on + strand, within EX28DRAFT_2145 at 2167.676 kb on - strand, within EX28DRAFT_2145 at 2167.714 kb on - strand, within EX28DRAFT_2145 at 2167.765 kb on + strand, within EX28DRAFT_2145 at 2167.765 kb on + strand, within EX28DRAFT_2145 at 2167.766 kb on - strand, within EX28DRAFT_2145 at 2167.766 kb on - strand, within EX28DRAFT_2145 at 2167.766 kb on - strand, within EX28DRAFT_2145 at 2167.897 kb on + strand, within EX28DRAFT_2145 at 2168.077 kb on + strand, within EX28DRAFT_2145 at 2168.185 kb on + strand, within EX28DRAFT_2145 at 2168.185 kb on + strand, within EX28DRAFT_2145 at 2168.185 kb on + strand, within EX28DRAFT_2145 at 2168.186 kb on - strand, within EX28DRAFT_2145 at 2168.186 kb on - strand, within EX28DRAFT_2145 at 2168.188 kb on - strand, within EX28DRAFT_2145 at 2168.188 kb on - strand, within EX28DRAFT_2145 at 2168.435 kb on + strand at 2168.482 kb on + strand at 2168.482 kb on + strand at 2168.482 kb on + strand at 2168.482 kb on + strand at 2168.482 kb on + strand at 2168.483 kb on - strand at 2168.577 kb on + strand at 2168.578 kb on - strand at 2168.699 kb on + strand at 2168.699 kb on + strand at 2168.699 kb on + strand at 2168.701 kb on + strand at 2168.908 kb on - strand, within EX28DRAFT_2146 at 2169.015 kb on + strand, within EX28DRAFT_2146 at 2169.051 kb on - strand, within EX28DRAFT_2146 at 2169.051 kb on - strand, within EX28DRAFT_2146 at 2169.150 kb on + strand, within EX28DRAFT_2146 at 2169.150 kb on + strand, within EX28DRAFT_2146 at 2169.151 kb on - strand, within EX28DRAFT_2146 at 2169.198 kb on + strand, within EX28DRAFT_2146 at 2169.199 kb on - strand, within EX28DRAFT_2146 at 2169.201 kb on + strand, within EX28DRAFT_2146 at 2169.202 kb on - strand, within EX28DRAFT_2146 at 2169.442 kb on + strand, within EX28DRAFT_2146 at 2169.443 kb on - strand, within EX28DRAFT_2146 at 2169.443 kb on - strand, within EX28DRAFT_2146 at 2169.447 kb on - strand, within EX28DRAFT_2146 at 2169.457 kb on - strand, within EX28DRAFT_2146
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,166,439 - EX28DRAFT_2144 0.59 -0.3 2,166,439 - EX28DRAFT_2144 0.59 -0.4 2,166,705 + EX28DRAFT_2144 0.83 -0.1 2,166,705 + EX28DRAFT_2144 0.83 -0.6 2,166,952 - -0.2 2,166,952 - -0.5 2,167,034 - +0.3 2,167,240 + -0.8 2,167,240 + -0.2 2,167,259 + -0.0 2,167,259 + -0.1 2,167,279 + +2.2 2,167,279 + -0.7 2,167,279 + +0.9 2,167,279 + -0.4 2,167,280 - -0.1 2,167,352 - EX28DRAFT_2145 0.14 -2.4 2,167,385 - EX28DRAFT_2145 0.16 +0.7 2,167,386 + EX28DRAFT_2145 0.17 -1.2 2,167,386 + EX28DRAFT_2145 0.17 -0.0 2,167,387 - EX28DRAFT_2145 0.17 -0.6 2,167,479 + EX28DRAFT_2145 0.24 +0.5 2,167,519 - EX28DRAFT_2145 0.27 -0.4 2,167,675 + EX28DRAFT_2145 0.39 -0.1 2,167,676 - EX28DRAFT_2145 0.39 +0.5 2,167,714 - EX28DRAFT_2145 0.42 +0.8 2,167,765 + EX28DRAFT_2145 0.46 -0.3 2,167,765 + EX28DRAFT_2145 0.46 -2.4 2,167,766 - EX28DRAFT_2145 0.46 -0.3 2,167,766 - EX28DRAFT_2145 0.46 +0.9 2,167,766 - EX28DRAFT_2145 0.46 +0.2 2,167,897 + EX28DRAFT_2145 0.56 +0.1 2,168,077 + EX28DRAFT_2145 0.70 -0.4 2,168,185 + EX28DRAFT_2145 0.78 -1.9 2,168,185 + EX28DRAFT_2145 0.78 -0.3 2,168,185 + EX28DRAFT_2145 0.78 +0.1 2,168,186 - EX28DRAFT_2145 0.78 -0.4 2,168,186 - EX28DRAFT_2145 0.78 -0.8 2,168,188 - EX28DRAFT_2145 0.78 -0.0 2,168,188 - EX28DRAFT_2145 0.78 -0.2 2,168,435 + -0.2 2,168,482 + +0.5 2,168,482 + +0.1 2,168,482 + -2.6 2,168,482 + +1.2 2,168,482 + +0.4 2,168,483 - -1.7 2,168,577 + -1.1 2,168,578 - -0.1 2,168,699 + +1.1 2,168,699 + +1.3 2,168,699 + +0.9 2,168,701 + -0.1 2,168,908 - EX28DRAFT_2146 0.18 +0.4 2,169,015 + EX28DRAFT_2146 0.22 +0.4 2,169,051 - EX28DRAFT_2146 0.24 +0.3 2,169,051 - EX28DRAFT_2146 0.24 +0.9 2,169,150 + EX28DRAFT_2146 0.28 -0.5 2,169,150 + EX28DRAFT_2146 0.28 +0.4 2,169,151 - EX28DRAFT_2146 0.28 +0.2 2,169,198 + EX28DRAFT_2146 0.30 +0.2 2,169,199 - EX28DRAFT_2146 0.30 -0.7 2,169,201 + EX28DRAFT_2146 0.30 -0.0 2,169,202 - EX28DRAFT_2146 0.30 -0.9 2,169,442 + EX28DRAFT_2146 0.40 +1.4 2,169,443 - EX28DRAFT_2146 0.40 +0.1 2,169,443 - EX28DRAFT_2146 0.40 +1.1 2,169,447 - EX28DRAFT_2146 0.40 +0.1 2,169,457 - EX28DRAFT_2146 0.41 +0.2
Or see this region's nucleotide sequence