Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1936

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1934 and EX28DRAFT_1935 are separated by 13 nucleotidesEX28DRAFT_1935 and EX28DRAFT_1936 overlap by 20 nucleotidesEX28DRAFT_1936 and EX28DRAFT_1937 overlap by 22 nucleotidesEX28DRAFT_1937 and EX28DRAFT_1938 are separated by 4 nucleotides EX28DRAFT_1934: EX28DRAFT_1934 - Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase, at 1,940,511 to 1,941,752 _1934 EX28DRAFT_1935: EX28DRAFT_1935 - ABC-type polar amino acid transport system, ATPase component, at 1,941,766 to 1,942,503 _1935 EX28DRAFT_1936: EX28DRAFT_1936 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,942,484 to 1,943,161 _1936 EX28DRAFT_1937: EX28DRAFT_1937 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,943,140 to 1,943,805 _1937 EX28DRAFT_1938: EX28DRAFT_1938 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,943,810 to 1,944,592 _1938 Position (kb) 1942 1943 1944Strain fitness (log2 ratio) -2 -1 0 1 2at 1941.485 kb on + strand, within EX28DRAFT_1934at 1941.485 kb on + strand, within EX28DRAFT_1934at 1941.614 kb on - strand, within EX28DRAFT_1934at 1941.614 kb on - strand, within EX28DRAFT_1934at 1941.614 kb on - strand, within EX28DRAFT_1934at 1941.757 kb on + strandat 1941.874 kb on - strand, within EX28DRAFT_1935at 1941.928 kb on + strand, within EX28DRAFT_1935at 1941.928 kb on + strand, within EX28DRAFT_1935at 1942.104 kb on - strand, within EX28DRAFT_1935at 1942.104 kb on - strand, within EX28DRAFT_1935at 1942.469 kb on + strandat 1942.469 kb on + strandat 1942.470 kb on - strandat 1942.486 kb on - strandat 1942.555 kb on + strand, within EX28DRAFT_1936at 1942.556 kb on - strand, within EX28DRAFT_1936at 1942.556 kb on - strand, within EX28DRAFT_1936at 1942.600 kb on - strand, within EX28DRAFT_1936at 1942.676 kb on - strand, within EX28DRAFT_1936at 1942.676 kb on - strand, within EX28DRAFT_1936at 1942.854 kb on + strand, within EX28DRAFT_1936at 1942.854 kb on + strand, within EX28DRAFT_1936at 1942.854 kb on + strand, within EX28DRAFT_1936at 1942.973 kb on - strand, within EX28DRAFT_1936at 1942.973 kb on - strand, within EX28DRAFT_1936at 1942.975 kb on - strand, within EX28DRAFT_1936at 1942.975 kb on - strand, within EX28DRAFT_1936at 1943.114 kb on - strandat 1943.209 kb on + strand, within EX28DRAFT_1937at 1943.209 kb on + strand, within EX28DRAFT_1937at 1943.209 kb on + strand, within EX28DRAFT_1937at 1943.210 kb on - strand, within EX28DRAFT_1937at 1943.214 kb on - strand, within EX28DRAFT_1937at 1943.235 kb on - strand, within EX28DRAFT_1937at 1943.692 kb on + strand, within EX28DRAFT_1937at 1943.971 kb on + strand, within EX28DRAFT_1938at 1943.972 kb on - strand, within EX28DRAFT_1938at 1944.045 kb on + strand, within EX28DRAFT_1938at 1944.045 kb on + strand, within EX28DRAFT_1938at 1944.046 kb on - strand, within EX28DRAFT_1938

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,941,485 + EX28DRAFT_1934 0.78 +0.4
1,941,485 + EX28DRAFT_1934 0.78 -0.1
1,941,614 - EX28DRAFT_1934 0.89 +0.8
1,941,614 - EX28DRAFT_1934 0.89 +0.4
1,941,614 - EX28DRAFT_1934 0.89 -0.2
1,941,757 + -0.8
1,941,874 - EX28DRAFT_1935 0.15 +0.1
1,941,928 + EX28DRAFT_1935 0.22 +0.4
1,941,928 + EX28DRAFT_1935 0.22 +0.5
1,942,104 - EX28DRAFT_1935 0.46 -0.1
1,942,104 - EX28DRAFT_1935 0.46 +0.3
1,942,469 + -2.2
1,942,469 + -0.0
1,942,470 - +0.4
1,942,486 - +0.2
1,942,555 + EX28DRAFT_1936 0.10 +2.2
1,942,556 - EX28DRAFT_1936 0.11 +0.5
1,942,556 - EX28DRAFT_1936 0.11 +1.3
1,942,600 - EX28DRAFT_1936 0.17 +0.0
1,942,676 - EX28DRAFT_1936 0.28 -0.2
1,942,676 - EX28DRAFT_1936 0.28 +0.3
1,942,854 + EX28DRAFT_1936 0.55 -1.0
1,942,854 + EX28DRAFT_1936 0.55 -1.0
1,942,854 + EX28DRAFT_1936 0.55 +0.2
1,942,973 - EX28DRAFT_1936 0.72 -0.0
1,942,973 - EX28DRAFT_1936 0.72 +0.1
1,942,975 - EX28DRAFT_1936 0.72 +0.6
1,942,975 - EX28DRAFT_1936 0.72 -0.1
1,943,114 - -0.1
1,943,209 + EX28DRAFT_1937 0.10 -0.4
1,943,209 + EX28DRAFT_1937 0.10 -0.3
1,943,209 + EX28DRAFT_1937 0.10 +0.2
1,943,210 - EX28DRAFT_1937 0.11 -2.7
1,943,214 - EX28DRAFT_1937 0.11 -1.2
1,943,235 - EX28DRAFT_1937 0.14 +0.8
1,943,692 + EX28DRAFT_1937 0.83 +1.3
1,943,971 + EX28DRAFT_1938 0.21 +1.2
1,943,972 - EX28DRAFT_1938 0.21 +0.3
1,944,045 + EX28DRAFT_1938 0.30 -1.0
1,944,045 + EX28DRAFT_1938 0.30 +0.1
1,944,046 - EX28DRAFT_1938 0.30 -0.1

Or see this region's nucleotide sequence