Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1901 and EX28DRAFT_1902 are separated by 147 nucleotides EX28DRAFT_1902 and EX28DRAFT_1903 are separated by 243 nucleotides EX28DRAFT_1903 and EX28DRAFT_1904 are separated by 394 nucleotides
EX28DRAFT_1901: EX28DRAFT_1901 - Amidases related to nicotinamidase, at 1,908,552 to 1,909,229
_1901
EX28DRAFT_1902: EX28DRAFT_1902 - tRNA, at 1,909,377 to 1,909,464
_1902
EX28DRAFT_1903: EX28DRAFT_1903 - amino acid carrier protein, at 1,909,708 to 1,911,213
_1903
EX28DRAFT_1904: EX28DRAFT_1904 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 1,911,608 to 1,912,675
_1904
Position (kb)
1909
1910
1911
1912 Strain fitness (log2 ratio)
-2
-1
0
1 at 1908.810 kb on + strand, within EX28DRAFT_1901 at 1908.811 kb on - strand, within EX28DRAFT_1901 at 1908.811 kb on - strand, within EX28DRAFT_1901 at 1908.884 kb on + strand, within EX28DRAFT_1901 at 1908.962 kb on + strand, within EX28DRAFT_1901 at 1908.963 kb on - strand, within EX28DRAFT_1901 at 1908.997 kb on - strand, within EX28DRAFT_1901 at 1909.131 kb on + strand, within EX28DRAFT_1901 at 1909.131 kb on + strand, within EX28DRAFT_1901 at 1909.131 kb on + strand, within EX28DRAFT_1901 at 1909.132 kb on - strand, within EX28DRAFT_1901 at 1909.132 kb on - strand, within EX28DRAFT_1901 at 1909.174 kb on - strand at 1909.267 kb on - strand at 1909.330 kb on + strand at 1909.331 kb on - strand at 1909.331 kb on - strand at 1909.333 kb on + strand at 1909.469 kb on + strand at 1909.469 kb on + strand at 1909.510 kb on + strand at 1909.661 kb on + strand at 1909.663 kb on + strand at 1909.665 kb on + strand at 1909.666 kb on - strand at 1909.666 kb on - strand at 1909.680 kb on + strand at 1909.802 kb on + strand at 1909.816 kb on - strand at 1910.000 kb on + strand, within EX28DRAFT_1903 at 1910.000 kb on + strand, within EX28DRAFT_1903 at 1910.001 kb on - strand, within EX28DRAFT_1903 at 1910.001 kb on - strand, within EX28DRAFT_1903 at 1910.002 kb on + strand, within EX28DRAFT_1903 at 1910.002 kb on + strand, within EX28DRAFT_1903 at 1910.023 kb on + strand, within EX28DRAFT_1903 at 1910.024 kb on - strand, within EX28DRAFT_1903 at 1910.024 kb on - strand, within EX28DRAFT_1903 at 1910.096 kb on + strand, within EX28DRAFT_1903 at 1910.096 kb on + strand, within EX28DRAFT_1903 at 1910.096 kb on + strand, within EX28DRAFT_1903 at 1910.096 kb on + strand, within EX28DRAFT_1903 at 1910.097 kb on - strand, within EX28DRAFT_1903 at 1910.097 kb on - strand, within EX28DRAFT_1903 at 1910.097 kb on - strand, within EX28DRAFT_1903 at 1910.099 kb on + strand, within EX28DRAFT_1903 at 1910.099 kb on + strand, within EX28DRAFT_1903 at 1910.100 kb on - strand, within EX28DRAFT_1903 at 1910.100 kb on - strand, within EX28DRAFT_1903 at 1910.100 kb on - strand, within EX28DRAFT_1903 at 1910.109 kb on + strand, within EX28DRAFT_1903 at 1910.154 kb on - strand, within EX28DRAFT_1903 at 1910.154 kb on - strand, within EX28DRAFT_1903 at 1910.157 kb on + strand, within EX28DRAFT_1903 at 1910.176 kb on - strand, within EX28DRAFT_1903 at 1910.176 kb on - strand, within EX28DRAFT_1903 at 1910.198 kb on + strand, within EX28DRAFT_1903 at 1910.198 kb on + strand, within EX28DRAFT_1903 at 1910.199 kb on - strand, within EX28DRAFT_1903 at 1910.199 kb on - strand, within EX28DRAFT_1903 at 1910.232 kb on + strand, within EX28DRAFT_1903 at 1910.266 kb on - strand, within EX28DRAFT_1903 at 1910.267 kb on + strand, within EX28DRAFT_1903 at 1910.268 kb on - strand, within EX28DRAFT_1903 at 1910.268 kb on - strand, within EX28DRAFT_1903 at 1910.290 kb on - strand, within EX28DRAFT_1903 at 1910.327 kb on + strand, within EX28DRAFT_1903 at 1910.750 kb on - strand, within EX28DRAFT_1903 at 1911.088 kb on - strand at 1911.216 kb on - strand at 1911.302 kb on + strand at 1911.368 kb on + strand at 1911.400 kb on + strand at 1911.475 kb on + strand at 1911.502 kb on + strand at 1911.536 kb on + strand at 1911.536 kb on + strand at 1911.536 kb on + strand at 1911.538 kb on + strand at 1911.540 kb on + strand at 1911.540 kb on + strand at 1911.541 kb on - strand at 1911.880 kb on + strand, within EX28DRAFT_1904 at 1911.892 kb on + strand, within EX28DRAFT_1904 at 1911.895 kb on - strand, within EX28DRAFT_1904 at 1911.942 kb on + strand, within EX28DRAFT_1904 at 1911.949 kb on + strand, within EX28DRAFT_1904 at 1911.949 kb on + strand, within EX28DRAFT_1904 at 1911.984 kb on + strand, within EX28DRAFT_1904 at 1911.985 kb on - strand, within EX28DRAFT_1904 at 1911.999 kb on + strand, within EX28DRAFT_1904 at 1912.000 kb on - strand, within EX28DRAFT_1904 at 1912.200 kb on + strand, within EX28DRAFT_1904
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,908,810 + EX28DRAFT_1901 0.38 +0.1 1,908,811 - EX28DRAFT_1901 0.38 -0.3 1,908,811 - EX28DRAFT_1901 0.38 -0.7 1,908,884 + EX28DRAFT_1901 0.49 +0.1 1,908,962 + EX28DRAFT_1901 0.60 -1.0 1,908,963 - EX28DRAFT_1901 0.61 -0.4 1,908,997 - EX28DRAFT_1901 0.66 +0.3 1,909,131 + EX28DRAFT_1901 0.85 +0.4 1,909,131 + EX28DRAFT_1901 0.85 -0.0 1,909,131 + EX28DRAFT_1901 0.85 -0.6 1,909,132 - EX28DRAFT_1901 0.86 +0.2 1,909,132 - EX28DRAFT_1901 0.86 +0.5 1,909,174 - -0.7 1,909,267 - +1.2 1,909,330 + -1.6 1,909,331 - -0.1 1,909,331 - +1.7 1,909,333 + -0.1 1,909,469 + -1.2 1,909,469 + +0.9 1,909,510 + -0.5 1,909,661 + +1.1 1,909,663 + +0.4 1,909,665 + +0.0 1,909,666 - -0.4 1,909,666 - +0.5 1,909,680 + -0.5 1,909,802 + +1.0 1,909,816 - -0.6 1,910,000 + EX28DRAFT_1903 0.19 -0.0 1,910,000 + EX28DRAFT_1903 0.19 +0.2 1,910,001 - EX28DRAFT_1903 0.19 -0.3 1,910,001 - EX28DRAFT_1903 0.19 +0.4 1,910,002 + EX28DRAFT_1903 0.20 -0.1 1,910,002 + EX28DRAFT_1903 0.20 -0.1 1,910,023 + EX28DRAFT_1903 0.21 +0.2 1,910,024 - EX28DRAFT_1903 0.21 +0.4 1,910,024 - EX28DRAFT_1903 0.21 -0.1 1,910,096 + EX28DRAFT_1903 0.26 +0.3 1,910,096 + EX28DRAFT_1903 0.26 +1.3 1,910,096 + EX28DRAFT_1903 0.26 +0.1 1,910,096 + EX28DRAFT_1903 0.26 +1.4 1,910,097 - EX28DRAFT_1903 0.26 +0.2 1,910,097 - EX28DRAFT_1903 0.26 +0.9 1,910,097 - EX28DRAFT_1903 0.26 +1.2 1,910,099 + EX28DRAFT_1903 0.26 -0.1 1,910,099 + EX28DRAFT_1903 0.26 +0.2 1,910,100 - EX28DRAFT_1903 0.26 +0.3 1,910,100 - EX28DRAFT_1903 0.26 -1.8 1,910,100 - EX28DRAFT_1903 0.26 +0.2 1,910,109 + EX28DRAFT_1903 0.27 +1.2 1,910,154 - EX28DRAFT_1903 0.30 +1.0 1,910,154 - EX28DRAFT_1903 0.30 +0.9 1,910,157 + EX28DRAFT_1903 0.30 -0.1 1,910,176 - EX28DRAFT_1903 0.31 -0.2 1,910,176 - EX28DRAFT_1903 0.31 +0.1 1,910,198 + EX28DRAFT_1903 0.33 -0.0 1,910,198 + EX28DRAFT_1903 0.33 +0.6 1,910,199 - EX28DRAFT_1903 0.33 +0.6 1,910,199 - EX28DRAFT_1903 0.33 -0.5 1,910,232 + EX28DRAFT_1903 0.35 +0.8 1,910,266 - EX28DRAFT_1903 0.37 +0.2 1,910,267 + EX28DRAFT_1903 0.37 +0.7 1,910,268 - EX28DRAFT_1903 0.37 +0.3 1,910,268 - EX28DRAFT_1903 0.37 -0.4 1,910,290 - EX28DRAFT_1903 0.39 +1.5 1,910,327 + EX28DRAFT_1903 0.41 -0.6 1,910,750 - EX28DRAFT_1903 0.69 +0.3 1,911,088 - +0.1 1,911,216 - -0.0 1,911,302 + -1.5 1,911,368 + +1.3 1,911,400 + +1.4 1,911,475 + -0.3 1,911,502 + +0.3 1,911,536 + -1.3 1,911,536 + +0.2 1,911,536 + -0.2 1,911,538 + -0.4 1,911,540 + -0.3 1,911,540 + -1.0 1,911,541 - +0.8 1,911,880 + EX28DRAFT_1904 0.25 +1.1 1,911,892 + EX28DRAFT_1904 0.27 +0.0 1,911,895 - EX28DRAFT_1904 0.27 -1.0 1,911,942 + EX28DRAFT_1904 0.31 +0.5 1,911,949 + EX28DRAFT_1904 0.32 +0.2 1,911,949 + EX28DRAFT_1904 0.32 -0.9 1,911,984 + EX28DRAFT_1904 0.35 -0.8 1,911,985 - EX28DRAFT_1904 0.35 +0.7 1,911,999 + EX28DRAFT_1904 0.37 -0.0 1,912,000 - EX28DRAFT_1904 0.37 -0.2 1,912,200 + EX28DRAFT_1904 0.55 -0.2
Or see this region's nucleotide sequence