Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1903

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1901 and EX28DRAFT_1902 are separated by 147 nucleotidesEX28DRAFT_1902 and EX28DRAFT_1903 are separated by 243 nucleotidesEX28DRAFT_1903 and EX28DRAFT_1904 are separated by 394 nucleotides EX28DRAFT_1901: EX28DRAFT_1901 - Amidases related to nicotinamidase, at 1,908,552 to 1,909,229 _1901 EX28DRAFT_1902: EX28DRAFT_1902 - tRNA, at 1,909,377 to 1,909,464 _1902 EX28DRAFT_1903: EX28DRAFT_1903 - amino acid carrier protein, at 1,909,708 to 1,911,213 _1903 EX28DRAFT_1904: EX28DRAFT_1904 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 1,911,608 to 1,912,675 _1904 Position (kb) 1909 1910 1911 1912Strain fitness (log2 ratio) -2 -1 0 1at 1908.810 kb on + strand, within EX28DRAFT_1901at 1908.811 kb on - strand, within EX28DRAFT_1901at 1908.811 kb on - strand, within EX28DRAFT_1901at 1908.884 kb on + strand, within EX28DRAFT_1901at 1908.962 kb on + strand, within EX28DRAFT_1901at 1908.963 kb on - strand, within EX28DRAFT_1901at 1908.997 kb on - strand, within EX28DRAFT_1901at 1909.131 kb on + strand, within EX28DRAFT_1901at 1909.131 kb on + strand, within EX28DRAFT_1901at 1909.131 kb on + strand, within EX28DRAFT_1901at 1909.132 kb on - strand, within EX28DRAFT_1901at 1909.132 kb on - strand, within EX28DRAFT_1901at 1909.174 kb on - strandat 1909.267 kb on - strandat 1909.330 kb on + strandat 1909.331 kb on - strandat 1909.331 kb on - strandat 1909.333 kb on + strandat 1909.469 kb on + strandat 1909.469 kb on + strandat 1909.510 kb on + strandat 1909.661 kb on + strandat 1909.663 kb on + strandat 1909.665 kb on + strandat 1909.666 kb on - strandat 1909.666 kb on - strandat 1909.680 kb on + strandat 1909.802 kb on + strandat 1909.816 kb on - strandat 1910.000 kb on + strand, within EX28DRAFT_1903at 1910.000 kb on + strand, within EX28DRAFT_1903at 1910.001 kb on - strand, within EX28DRAFT_1903at 1910.001 kb on - strand, within EX28DRAFT_1903at 1910.002 kb on + strand, within EX28DRAFT_1903at 1910.002 kb on + strand, within EX28DRAFT_1903at 1910.023 kb on + strand, within EX28DRAFT_1903at 1910.024 kb on - strand, within EX28DRAFT_1903at 1910.024 kb on - strand, within EX28DRAFT_1903at 1910.096 kb on + strand, within EX28DRAFT_1903at 1910.096 kb on + strand, within EX28DRAFT_1903at 1910.096 kb on + strand, within EX28DRAFT_1903at 1910.096 kb on + strand, within EX28DRAFT_1903at 1910.097 kb on - strand, within EX28DRAFT_1903at 1910.097 kb on - strand, within EX28DRAFT_1903at 1910.097 kb on - strand, within EX28DRAFT_1903at 1910.099 kb on + strand, within EX28DRAFT_1903at 1910.099 kb on + strand, within EX28DRAFT_1903at 1910.100 kb on - strand, within EX28DRAFT_1903at 1910.100 kb on - strand, within EX28DRAFT_1903at 1910.100 kb on - strand, within EX28DRAFT_1903at 1910.109 kb on + strand, within EX28DRAFT_1903at 1910.154 kb on - strand, within EX28DRAFT_1903at 1910.154 kb on - strand, within EX28DRAFT_1903at 1910.157 kb on + strand, within EX28DRAFT_1903at 1910.176 kb on - strand, within EX28DRAFT_1903at 1910.176 kb on - strand, within EX28DRAFT_1903at 1910.198 kb on + strand, within EX28DRAFT_1903at 1910.198 kb on + strand, within EX28DRAFT_1903at 1910.199 kb on - strand, within EX28DRAFT_1903at 1910.199 kb on - strand, within EX28DRAFT_1903at 1910.232 kb on + strand, within EX28DRAFT_1903at 1910.266 kb on - strand, within EX28DRAFT_1903at 1910.267 kb on + strand, within EX28DRAFT_1903at 1910.268 kb on - strand, within EX28DRAFT_1903at 1910.268 kb on - strand, within EX28DRAFT_1903at 1910.290 kb on - strand, within EX28DRAFT_1903at 1910.327 kb on + strand, within EX28DRAFT_1903at 1910.750 kb on - strand, within EX28DRAFT_1903at 1911.088 kb on - strandat 1911.216 kb on - strandat 1911.302 kb on + strandat 1911.368 kb on + strandat 1911.400 kb on + strandat 1911.475 kb on + strandat 1911.502 kb on + strandat 1911.536 kb on + strandat 1911.536 kb on + strandat 1911.536 kb on + strandat 1911.538 kb on + strandat 1911.540 kb on + strandat 1911.540 kb on + strandat 1911.541 kb on - strandat 1911.880 kb on + strand, within EX28DRAFT_1904at 1911.892 kb on + strand, within EX28DRAFT_1904at 1911.895 kb on - strand, within EX28DRAFT_1904at 1911.942 kb on + strand, within EX28DRAFT_1904at 1911.949 kb on + strand, within EX28DRAFT_1904at 1911.949 kb on + strand, within EX28DRAFT_1904at 1911.984 kb on + strand, within EX28DRAFT_1904at 1911.985 kb on - strand, within EX28DRAFT_1904at 1911.999 kb on + strand, within EX28DRAFT_1904at 1912.000 kb on - strand, within EX28DRAFT_1904at 1912.200 kb on + strand, within EX28DRAFT_1904

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
1,908,810 + EX28DRAFT_1901 0.38 +0.1
1,908,811 - EX28DRAFT_1901 0.38 -0.3
1,908,811 - EX28DRAFT_1901 0.38 -0.7
1,908,884 + EX28DRAFT_1901 0.49 +0.1
1,908,962 + EX28DRAFT_1901 0.60 -1.0
1,908,963 - EX28DRAFT_1901 0.61 -0.4
1,908,997 - EX28DRAFT_1901 0.66 +0.3
1,909,131 + EX28DRAFT_1901 0.85 +0.4
1,909,131 + EX28DRAFT_1901 0.85 -0.0
1,909,131 + EX28DRAFT_1901 0.85 -0.6
1,909,132 - EX28DRAFT_1901 0.86 +0.2
1,909,132 - EX28DRAFT_1901 0.86 +0.5
1,909,174 - -0.7
1,909,267 - +1.2
1,909,330 + -1.6
1,909,331 - -0.1
1,909,331 - +1.7
1,909,333 + -0.1
1,909,469 + -1.2
1,909,469 + +0.9
1,909,510 + -0.5
1,909,661 + +1.1
1,909,663 + +0.4
1,909,665 + +0.0
1,909,666 - -0.4
1,909,666 - +0.5
1,909,680 + -0.5
1,909,802 + +1.0
1,909,816 - -0.6
1,910,000 + EX28DRAFT_1903 0.19 -0.0
1,910,000 + EX28DRAFT_1903 0.19 +0.2
1,910,001 - EX28DRAFT_1903 0.19 -0.3
1,910,001 - EX28DRAFT_1903 0.19 +0.4
1,910,002 + EX28DRAFT_1903 0.20 -0.1
1,910,002 + EX28DRAFT_1903 0.20 -0.1
1,910,023 + EX28DRAFT_1903 0.21 +0.2
1,910,024 - EX28DRAFT_1903 0.21 +0.4
1,910,024 - EX28DRAFT_1903 0.21 -0.1
1,910,096 + EX28DRAFT_1903 0.26 +0.3
1,910,096 + EX28DRAFT_1903 0.26 +1.3
1,910,096 + EX28DRAFT_1903 0.26 +0.1
1,910,096 + EX28DRAFT_1903 0.26 +1.4
1,910,097 - EX28DRAFT_1903 0.26 +0.2
1,910,097 - EX28DRAFT_1903 0.26 +0.9
1,910,097 - EX28DRAFT_1903 0.26 +1.2
1,910,099 + EX28DRAFT_1903 0.26 -0.1
1,910,099 + EX28DRAFT_1903 0.26 +0.2
1,910,100 - EX28DRAFT_1903 0.26 +0.3
1,910,100 - EX28DRAFT_1903 0.26 -1.8
1,910,100 - EX28DRAFT_1903 0.26 +0.2
1,910,109 + EX28DRAFT_1903 0.27 +1.2
1,910,154 - EX28DRAFT_1903 0.30 +1.0
1,910,154 - EX28DRAFT_1903 0.30 +0.9
1,910,157 + EX28DRAFT_1903 0.30 -0.1
1,910,176 - EX28DRAFT_1903 0.31 -0.2
1,910,176 - EX28DRAFT_1903 0.31 +0.1
1,910,198 + EX28DRAFT_1903 0.33 -0.0
1,910,198 + EX28DRAFT_1903 0.33 +0.6
1,910,199 - EX28DRAFT_1903 0.33 +0.6
1,910,199 - EX28DRAFT_1903 0.33 -0.5
1,910,232 + EX28DRAFT_1903 0.35 +0.8
1,910,266 - EX28DRAFT_1903 0.37 +0.2
1,910,267 + EX28DRAFT_1903 0.37 +0.7
1,910,268 - EX28DRAFT_1903 0.37 +0.3
1,910,268 - EX28DRAFT_1903 0.37 -0.4
1,910,290 - EX28DRAFT_1903 0.39 +1.5
1,910,327 + EX28DRAFT_1903 0.41 -0.6
1,910,750 - EX28DRAFT_1903 0.69 +0.3
1,911,088 - +0.1
1,911,216 - -0.0
1,911,302 + -1.5
1,911,368 + +1.3
1,911,400 + +1.4
1,911,475 + -0.3
1,911,502 + +0.3
1,911,536 + -1.3
1,911,536 + +0.2
1,911,536 + -0.2
1,911,538 + -0.4
1,911,540 + -0.3
1,911,540 + -1.0
1,911,541 - +0.8
1,911,880 + EX28DRAFT_1904 0.25 +1.1
1,911,892 + EX28DRAFT_1904 0.27 +0.0
1,911,895 - EX28DRAFT_1904 0.27 -1.0
1,911,942 + EX28DRAFT_1904 0.31 +0.5
1,911,949 + EX28DRAFT_1904 0.32 +0.2
1,911,949 + EX28DRAFT_1904 0.32 -0.9
1,911,984 + EX28DRAFT_1904 0.35 -0.8
1,911,985 - EX28DRAFT_1904 0.35 +0.7
1,911,999 + EX28DRAFT_1904 0.37 -0.0
1,912,000 - EX28DRAFT_1904 0.37 -0.2
1,912,200 + EX28DRAFT_1904 0.55 -0.2

Or see this region's nucleotide sequence