Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1815 and EX28DRAFT_1816 are separated by 149 nucleotides EX28DRAFT_1816 and EX28DRAFT_1817 are separated by 583 nucleotides
EX28DRAFT_1815: EX28DRAFT_1815 - Predicted membrane protein, at 1,831,356 to 1,832,429
_1815
EX28DRAFT_1816: EX28DRAFT_1816 - transcription-repair coupling factor (mfd), at 1,832,579 to 1,836,025
_1816
EX28DRAFT_1817: EX28DRAFT_1817 - Uncharacterized protein conserved in bacteria, at 1,836,609 to 1,837,574
_1817
Position (kb)
1832
1833
1834
1835
1836
1837 Strain fitness (log2 ratio)
-2
-1
0
1 at 1831.792 kb on - strand, within EX28DRAFT_1815 at 1831.792 kb on - strand, within EX28DRAFT_1815 at 1831.792 kb on - strand, within EX28DRAFT_1815 at 1831.798 kb on - strand, within EX28DRAFT_1815 at 1831.826 kb on + strand, within EX28DRAFT_1815 at 1831.931 kb on - strand, within EX28DRAFT_1815 at 1831.944 kb on + strand, within EX28DRAFT_1815 at 1831.947 kb on + strand, within EX28DRAFT_1815 at 1831.965 kb on + strand, within EX28DRAFT_1815 at 1832.067 kb on - strand, within EX28DRAFT_1815 at 1832.117 kb on - strand, within EX28DRAFT_1815 at 1832.122 kb on - strand, within EX28DRAFT_1815 at 1832.140 kb on - strand, within EX28DRAFT_1815 at 1832.196 kb on + strand, within EX28DRAFT_1815 at 1832.262 kb on + strand, within EX28DRAFT_1815 at 1832.321 kb on + strand, within EX28DRAFT_1815 at 1832.322 kb on - strand at 1832.322 kb on - strand at 1832.351 kb on + strand at 1832.399 kb on + strand at 1832.430 kb on + strand at 1832.430 kb on + strand at 1832.430 kb on + strand at 1832.430 kb on + strand at 1832.431 kb on - strand at 1832.431 kb on - strand at 1832.552 kb on - strand at 1832.574 kb on + strand at 1832.574 kb on + strand at 1832.575 kb on - strand at 1832.575 kb on - strand at 1832.595 kb on + strand at 1832.864 kb on + strand at 1832.865 kb on - strand at 1832.911 kb on + strand at 1832.942 kb on + strand, within EX28DRAFT_1816 at 1832.942 kb on + strand, within EX28DRAFT_1816 at 1833.195 kb on + strand, within EX28DRAFT_1816 at 1833.195 kb on + strand, within EX28DRAFT_1816 at 1833.195 kb on + strand, within EX28DRAFT_1816 at 1833.196 kb on - strand, within EX28DRAFT_1816 at 1833.210 kb on + strand, within EX28DRAFT_1816 at 1833.307 kb on + strand, within EX28DRAFT_1816 at 1833.307 kb on + strand, within EX28DRAFT_1816 at 1833.307 kb on + strand, within EX28DRAFT_1816 at 1833.308 kb on - strand, within EX28DRAFT_1816 at 1833.308 kb on - strand, within EX28DRAFT_1816 at 1833.311 kb on + strand, within EX28DRAFT_1816 at 1833.353 kb on + strand, within EX28DRAFT_1816 at 1833.402 kb on - strand, within EX28DRAFT_1816 at 1833.402 kb on - strand, within EX28DRAFT_1816 at 1833.402 kb on - strand, within EX28DRAFT_1816 at 1833.415 kb on + strand, within EX28DRAFT_1816 at 1833.595 kb on + strand, within EX28DRAFT_1816 at 1833.595 kb on + strand, within EX28DRAFT_1816 at 1833.596 kb on - strand, within EX28DRAFT_1816 at 1833.596 kb on - strand, within EX28DRAFT_1816 at 1833.771 kb on + strand, within EX28DRAFT_1816 at 1834.101 kb on - strand, within EX28DRAFT_1816 at 1834.116 kb on - strand, within EX28DRAFT_1816 at 1834.136 kb on + strand, within EX28DRAFT_1816 at 1834.136 kb on + strand, within EX28DRAFT_1816 at 1834.136 kb on + strand, within EX28DRAFT_1816 at 1834.137 kb on - strand, within EX28DRAFT_1816 at 1834.293 kb on - strand, within EX28DRAFT_1816 at 1834.328 kb on - strand, within EX28DRAFT_1816 at 1834.337 kb on - strand, within EX28DRAFT_1816 at 1834.423 kb on + strand, within EX28DRAFT_1816 at 1834.792 kb on + strand, within EX28DRAFT_1816 at 1834.793 kb on - strand, within EX28DRAFT_1816 at 1834.955 kb on + strand, within EX28DRAFT_1816 at 1834.956 kb on - strand, within EX28DRAFT_1816 at 1835.015 kb on + strand, within EX28DRAFT_1816 at 1835.015 kb on + strand, within EX28DRAFT_1816 at 1835.016 kb on - strand, within EX28DRAFT_1816 at 1835.016 kb on - strand, within EX28DRAFT_1816 at 1835.016 kb on - strand, within EX28DRAFT_1816 at 1835.016 kb on - strand, within EX28DRAFT_1816 at 1835.018 kb on + strand, within EX28DRAFT_1816 at 1835.018 kb on + strand, within EX28DRAFT_1816 at 1835.165 kb on - strand, within EX28DRAFT_1816 at 1835.501 kb on + strand, within EX28DRAFT_1816 at 1835.502 kb on - strand, within EX28DRAFT_1816 at 1835.502 kb on - strand, within EX28DRAFT_1816 at 1835.502 kb on - strand, within EX28DRAFT_1816 at 1835.502 kb on - strand, within EX28DRAFT_1816 at 1835.560 kb on - strand, within EX28DRAFT_1816 at 1835.657 kb on + strand, within EX28DRAFT_1816 at 1835.657 kb on + strand, within EX28DRAFT_1816 at 1835.658 kb on - strand, within EX28DRAFT_1816 at 1835.704 kb on + strand at 1835.704 kb on + strand at 1835.704 kb on + strand at 1835.705 kb on - strand at 1835.705 kb on - strand at 1835.705 kb on - strand at 1835.941 kb on + strand at 1835.986 kb on + strand at 1836.043 kb on - strand at 1836.061 kb on - strand at 1836.065 kb on + strand at 1836.110 kb on + strand at 1836.110 kb on + strand at 1836.110 kb on + strand at 1836.110 kb on + strand at 1836.111 kb on - strand at 1836.111 kb on - strand at 1836.244 kb on - strand at 1836.244 kb on - strand at 1836.350 kb on + strand at 1836.362 kb on + strand at 1836.362 kb on + strand at 1836.362 kb on + strand at 1836.392 kb on - strand at 1836.392 kb on - strand at 1836.503 kb on + strand at 1836.552 kb on + strand at 1836.557 kb on - strand at 1836.572 kb on + strand at 1836.846 kb on + strand, within EX28DRAFT_1817 at 1836.925 kb on + strand, within EX28DRAFT_1817 at 1836.948 kb on + strand, within EX28DRAFT_1817 at 1836.948 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.951 kb on + strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.952 kb on - strand, within EX28DRAFT_1817 at 1836.985 kb on - strand, within EX28DRAFT_1817
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,831,792 - EX28DRAFT_1815 0.41 -0.0 1,831,792 - EX28DRAFT_1815 0.41 -0.6 1,831,792 - EX28DRAFT_1815 0.41 +1.1 1,831,798 - EX28DRAFT_1815 0.41 +0.1 1,831,826 + EX28DRAFT_1815 0.44 -2.2 1,831,931 - EX28DRAFT_1815 0.54 +0.5 1,831,944 + EX28DRAFT_1815 0.55 -2.3 1,831,947 + EX28DRAFT_1815 0.55 +1.3 1,831,965 + EX28DRAFT_1815 0.57 +0.2 1,832,067 - EX28DRAFT_1815 0.66 -0.2 1,832,117 - EX28DRAFT_1815 0.71 +0.9 1,832,122 - EX28DRAFT_1815 0.71 +0.9 1,832,140 - EX28DRAFT_1815 0.73 +0.3 1,832,196 + EX28DRAFT_1815 0.78 +0.6 1,832,262 + EX28DRAFT_1815 0.84 +1.5 1,832,321 + EX28DRAFT_1815 0.90 +0.4 1,832,322 - +0.4 1,832,322 - -0.1 1,832,351 + -0.7 1,832,399 + +0.2 1,832,430 + +0.6 1,832,430 + -0.6 1,832,430 + -0.2 1,832,430 + +0.4 1,832,431 - -0.6 1,832,431 - +0.7 1,832,552 - +0.7 1,832,574 + -0.9 1,832,574 + +0.5 1,832,575 - +1.0 1,832,575 - +0.5 1,832,595 + +0.5 1,832,864 + +1.3 1,832,865 - +0.6 1,832,911 + +0.8 1,832,942 + EX28DRAFT_1816 0.11 -0.6 1,832,942 + EX28DRAFT_1816 0.11 +0.9 1,833,195 + EX28DRAFT_1816 0.18 +0.9 1,833,195 + EX28DRAFT_1816 0.18 +0.7 1,833,195 + EX28DRAFT_1816 0.18 -0.2 1,833,196 - EX28DRAFT_1816 0.18 -0.1 1,833,210 + EX28DRAFT_1816 0.18 -0.3 1,833,307 + EX28DRAFT_1816 0.21 +0.6 1,833,307 + EX28DRAFT_1816 0.21 -0.2 1,833,307 + EX28DRAFT_1816 0.21 +0.4 1,833,308 - EX28DRAFT_1816 0.21 +1.3 1,833,308 - EX28DRAFT_1816 0.21 +1.5 1,833,311 + EX28DRAFT_1816 0.21 -2.6 1,833,353 + EX28DRAFT_1816 0.22 +0.7 1,833,402 - EX28DRAFT_1816 0.24 +0.8 1,833,402 - EX28DRAFT_1816 0.24 +0.3 1,833,402 - EX28DRAFT_1816 0.24 +0.7 1,833,415 + EX28DRAFT_1816 0.24 +0.9 1,833,595 + EX28DRAFT_1816 0.29 -0.1 1,833,595 + EX28DRAFT_1816 0.29 +0.2 1,833,596 - EX28DRAFT_1816 0.30 -0.3 1,833,596 - EX28DRAFT_1816 0.30 +0.4 1,833,771 + EX28DRAFT_1816 0.35 +1.0 1,834,101 - EX28DRAFT_1816 0.44 +0.3 1,834,116 - EX28DRAFT_1816 0.45 +0.2 1,834,136 + EX28DRAFT_1816 0.45 +1.0 1,834,136 + EX28DRAFT_1816 0.45 +0.7 1,834,136 + EX28DRAFT_1816 0.45 +0.6 1,834,137 - EX28DRAFT_1816 0.45 -0.1 1,834,293 - EX28DRAFT_1816 0.50 +0.7 1,834,328 - EX28DRAFT_1816 0.51 +0.8 1,834,337 - EX28DRAFT_1816 0.51 +0.4 1,834,423 + EX28DRAFT_1816 0.53 -0.1 1,834,792 + EX28DRAFT_1816 0.64 +0.4 1,834,793 - EX28DRAFT_1816 0.64 +0.8 1,834,955 + EX28DRAFT_1816 0.69 +0.3 1,834,956 - EX28DRAFT_1816 0.69 -0.1 1,835,015 + EX28DRAFT_1816 0.71 -0.2 1,835,015 + EX28DRAFT_1816 0.71 +0.8 1,835,016 - EX28DRAFT_1816 0.71 -0.2 1,835,016 - EX28DRAFT_1816 0.71 -0.7 1,835,016 - EX28DRAFT_1816 0.71 +0.4 1,835,016 - EX28DRAFT_1816 0.71 +0.6 1,835,018 + EX28DRAFT_1816 0.71 +0.3 1,835,018 + EX28DRAFT_1816 0.71 +1.3 1,835,165 - EX28DRAFT_1816 0.75 -0.2 1,835,501 + EX28DRAFT_1816 0.85 +0.4 1,835,502 - EX28DRAFT_1816 0.85 +0.8 1,835,502 - EX28DRAFT_1816 0.85 -0.5 1,835,502 - EX28DRAFT_1816 0.85 +0.6 1,835,502 - EX28DRAFT_1816 0.85 +0.2 1,835,560 - EX28DRAFT_1816 0.86 +1.5 1,835,657 + EX28DRAFT_1816 0.89 +0.2 1,835,657 + EX28DRAFT_1816 0.89 +0.7 1,835,658 - EX28DRAFT_1816 0.89 +0.1 1,835,704 + +0.8 1,835,704 + +0.1 1,835,704 + +0.3 1,835,705 - +0.4 1,835,705 - +0.6 1,835,705 - -0.1 1,835,941 + -0.5 1,835,986 + +1.4 1,836,043 - -0.2 1,836,061 - +0.0 1,836,065 + -2.6 1,836,110 + +0.5 1,836,110 + +0.7 1,836,110 + -0.6 1,836,110 + -0.2 1,836,111 - +0.3 1,836,111 - -0.4 1,836,244 - +0.2 1,836,244 - +1.0 1,836,350 + -0.4 1,836,362 + +0.2 1,836,362 + -1.1 1,836,362 + +0.1 1,836,392 - -0.3 1,836,392 - -1.1 1,836,503 + +0.0 1,836,552 + +0.3 1,836,557 - +0.2 1,836,572 + +0.1 1,836,846 + EX28DRAFT_1817 0.25 +0.3 1,836,925 + EX28DRAFT_1817 0.33 -0.1 1,836,948 + EX28DRAFT_1817 0.35 -0.3 1,836,948 + EX28DRAFT_1817 0.35 -0.3 1,836,951 + EX28DRAFT_1817 0.35 -0.4 1,836,951 + EX28DRAFT_1817 0.35 -0.1 1,836,951 + EX28DRAFT_1817 0.35 +1.0 1,836,951 + EX28DRAFT_1817 0.35 +0.2 1,836,951 + EX28DRAFT_1817 0.35 -0.4 1,836,952 - EX28DRAFT_1817 0.36 -0.3 1,836,952 - EX28DRAFT_1817 0.36 +0.5 1,836,952 - EX28DRAFT_1817 0.36 -0.3 1,836,985 - EX28DRAFT_1817 0.39 -2.6
Or see this region's nucleotide sequence