Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1803

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1802 and EX28DRAFT_1803 are separated by 91 nucleotidesEX28DRAFT_1803 and EX28DRAFT_1804 are separated by 300 nucleotides EX28DRAFT_1802: EX28DRAFT_1802 - Uncharacterized conserved protein, at 1,816,189 to 1,817,310 _1802 EX28DRAFT_1803: EX28DRAFT_1803 - peptidase T, at 1,817,402 to 1,818,625 _1803 EX28DRAFT_1804: EX28DRAFT_1804 - spermidine/putrescine ABC transporter ATP-binding subunit, at 1,818,926 to 1,820,011 _1804 Position (kb) 1817 1818 1819Strain fitness (log2 ratio) -2 -1 0 1 2at 1816.475 kb on + strand, within EX28DRAFT_1802at 1816.476 kb on - strand, within EX28DRAFT_1802at 1816.553 kb on + strand, within EX28DRAFT_1802at 1816.553 kb on + strand, within EX28DRAFT_1802at 1816.574 kb on - strand, within EX28DRAFT_1802at 1816.781 kb on - strand, within EX28DRAFT_1802at 1816.787 kb on + strand, within EX28DRAFT_1802at 1816.837 kb on + strand, within EX28DRAFT_1802at 1816.837 kb on + strand, within EX28DRAFT_1802at 1816.864 kb on + strand, within EX28DRAFT_1802at 1816.864 kb on + strand, within EX28DRAFT_1802at 1817.069 kb on - strand, within EX28DRAFT_1802at 1817.069 kb on - strand, within EX28DRAFT_1802at 1817.319 kb on - strandat 1817.349 kb on + strandat 1817.362 kb on + strandat 1817.485 kb on + strandat 1817.486 kb on - strandat 1817.486 kb on - strandat 1817.493 kb on + strandat 1817.500 kb on - strandat 1817.633 kb on - strand, within EX28DRAFT_1803at 1817.667 kb on + strand, within EX28DRAFT_1803at 1817.667 kb on + strand, within EX28DRAFT_1803at 1817.668 kb on - strand, within EX28DRAFT_1803at 1817.670 kb on + strand, within EX28DRAFT_1803at 1817.670 kb on + strand, within EX28DRAFT_1803at 1817.671 kb on - strand, within EX28DRAFT_1803at 1817.671 kb on - strand, within EX28DRAFT_1803at 1817.671 kb on - strand, within EX28DRAFT_1803at 1817.696 kb on - strand, within EX28DRAFT_1803at 1817.696 kb on - strand, within EX28DRAFT_1803at 1817.697 kb on + strand, within EX28DRAFT_1803at 1817.697 kb on + strand, within EX28DRAFT_1803at 1817.698 kb on - strand, within EX28DRAFT_1803at 1817.711 kb on + strand, within EX28DRAFT_1803at 1817.797 kb on - strand, within EX28DRAFT_1803at 1817.797 kb on - strand, within EX28DRAFT_1803at 1817.816 kb on + strand, within EX28DRAFT_1803at 1817.845 kb on - strand, within EX28DRAFT_1803at 1817.845 kb on - strand, within EX28DRAFT_1803at 1818.048 kb on + strand, within EX28DRAFT_1803at 1818.365 kb on - strand, within EX28DRAFT_1803at 1818.521 kb on + strandat 1818.572 kb on - strandat 1818.572 kb on - strandat 1818.572 kb on - strandat 1818.594 kb on + strandat 1818.615 kb on - strandat 1818.619 kb on + strandat 1818.620 kb on - strandat 1818.728 kb on + strandat 1818.729 kb on - strandat 1818.745 kb on - strandat 1818.750 kb on + strandat 1818.751 kb on - strandat 1818.756 kb on - strandat 1818.834 kb on + strandat 1818.834 kb on + strandat 1818.874 kb on - strandat 1819.150 kb on + strand, within EX28DRAFT_1804at 1819.167 kb on - strand, within EX28DRAFT_1804at 1819.445 kb on - strand, within EX28DRAFT_1804at 1819.445 kb on - strand, within EX28DRAFT_1804at 1819.581 kb on - strand, within EX28DRAFT_1804

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,816,475 + EX28DRAFT_1802 0.25 +0.1
1,816,476 - EX28DRAFT_1802 0.26 -0.3
1,816,553 + EX28DRAFT_1802 0.32 +0.5
1,816,553 + EX28DRAFT_1802 0.32 +0.0
1,816,574 - EX28DRAFT_1802 0.34 +1.0
1,816,781 - EX28DRAFT_1802 0.53 +1.1
1,816,787 + EX28DRAFT_1802 0.53 -0.2
1,816,837 + EX28DRAFT_1802 0.58 -0.4
1,816,837 + EX28DRAFT_1802 0.58 -0.4
1,816,864 + EX28DRAFT_1802 0.60 -2.2
1,816,864 + EX28DRAFT_1802 0.60 +0.6
1,817,069 - EX28DRAFT_1802 0.78 +1.7
1,817,069 - EX28DRAFT_1802 0.78 -0.7
1,817,319 - +0.8
1,817,349 + -0.7
1,817,362 + +0.3
1,817,485 + +0.7
1,817,486 - -0.2
1,817,486 - +0.4
1,817,493 + -0.5
1,817,500 - -0.8
1,817,633 - EX28DRAFT_1803 0.19 +0.8
1,817,667 + EX28DRAFT_1803 0.22 -0.3
1,817,667 + EX28DRAFT_1803 0.22 -0.1
1,817,668 - EX28DRAFT_1803 0.22 -0.6
1,817,670 + EX28DRAFT_1803 0.22 -0.3
1,817,670 + EX28DRAFT_1803 0.22 -0.7
1,817,671 - EX28DRAFT_1803 0.22 -1.3
1,817,671 - EX28DRAFT_1803 0.22 +0.7
1,817,671 - EX28DRAFT_1803 0.22 -0.9
1,817,696 - EX28DRAFT_1803 0.24 -1.7
1,817,696 - EX28DRAFT_1803 0.24 +0.2
1,817,697 + EX28DRAFT_1803 0.24 -0.2
1,817,697 + EX28DRAFT_1803 0.24 -1.3
1,817,698 - EX28DRAFT_1803 0.24 -0.4
1,817,711 + EX28DRAFT_1803 0.25 -1.0
1,817,797 - EX28DRAFT_1803 0.32 +0.1
1,817,797 - EX28DRAFT_1803 0.32 +0.2
1,817,816 + EX28DRAFT_1803 0.34 -2.1
1,817,845 - EX28DRAFT_1803 0.36 +0.3
1,817,845 - EX28DRAFT_1803 0.36 +1.4
1,818,048 + EX28DRAFT_1803 0.53 +0.2
1,818,365 - EX28DRAFT_1803 0.79 +0.0
1,818,521 + +0.1
1,818,572 - +0.6
1,818,572 - -0.9
1,818,572 - -0.8
1,818,594 + -0.3
1,818,615 - -1.9
1,818,619 + +0.7
1,818,620 - +0.5
1,818,728 + -0.0
1,818,729 - -0.7
1,818,745 - +0.2
1,818,750 + -0.9
1,818,751 - -0.1
1,818,756 - -0.5
1,818,834 + -0.5
1,818,834 + +1.8
1,818,874 - +0.1
1,819,150 + EX28DRAFT_1804 0.21 +1.0
1,819,167 - EX28DRAFT_1804 0.22 +0.1
1,819,445 - EX28DRAFT_1804 0.48 +0.4
1,819,445 - EX28DRAFT_1804 0.48 +1.7
1,819,581 - EX28DRAFT_1804 0.60 +0.9

Or see this region's nucleotide sequence