Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1802 and EX28DRAFT_1803 are separated by 91 nucleotides EX28DRAFT_1803 and EX28DRAFT_1804 are separated by 300 nucleotides
EX28DRAFT_1802: EX28DRAFT_1802 - Uncharacterized conserved protein, at 1,816,189 to 1,817,310
_1802
EX28DRAFT_1803: EX28DRAFT_1803 - peptidase T, at 1,817,402 to 1,818,625
_1803
EX28DRAFT_1804: EX28DRAFT_1804 - spermidine/putrescine ABC transporter ATP-binding subunit, at 1,818,926 to 1,820,011
_1804
Position (kb)
1817
1818
1819 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1816.475 kb on + strand, within EX28DRAFT_1802 at 1816.476 kb on - strand, within EX28DRAFT_1802 at 1816.553 kb on + strand, within EX28DRAFT_1802 at 1816.553 kb on + strand, within EX28DRAFT_1802 at 1816.574 kb on - strand, within EX28DRAFT_1802 at 1816.781 kb on - strand, within EX28DRAFT_1802 at 1816.787 kb on + strand, within EX28DRAFT_1802 at 1816.837 kb on + strand, within EX28DRAFT_1802 at 1816.837 kb on + strand, within EX28DRAFT_1802 at 1816.864 kb on + strand, within EX28DRAFT_1802 at 1816.864 kb on + strand, within EX28DRAFT_1802 at 1817.069 kb on - strand, within EX28DRAFT_1802 at 1817.069 kb on - strand, within EX28DRAFT_1802 at 1817.319 kb on - strand at 1817.349 kb on + strand at 1817.362 kb on + strand at 1817.485 kb on + strand at 1817.486 kb on - strand at 1817.486 kb on - strand at 1817.493 kb on + strand at 1817.500 kb on - strand at 1817.633 kb on - strand, within EX28DRAFT_1803 at 1817.667 kb on + strand, within EX28DRAFT_1803 at 1817.667 kb on + strand, within EX28DRAFT_1803 at 1817.668 kb on - strand, within EX28DRAFT_1803 at 1817.670 kb on + strand, within EX28DRAFT_1803 at 1817.670 kb on + strand, within EX28DRAFT_1803 at 1817.671 kb on - strand, within EX28DRAFT_1803 at 1817.671 kb on - strand, within EX28DRAFT_1803 at 1817.671 kb on - strand, within EX28DRAFT_1803 at 1817.696 kb on - strand, within EX28DRAFT_1803 at 1817.696 kb on - strand, within EX28DRAFT_1803 at 1817.697 kb on + strand, within EX28DRAFT_1803 at 1817.697 kb on + strand, within EX28DRAFT_1803 at 1817.698 kb on - strand, within EX28DRAFT_1803 at 1817.711 kb on + strand, within EX28DRAFT_1803 at 1817.797 kb on - strand, within EX28DRAFT_1803 at 1817.797 kb on - strand, within EX28DRAFT_1803 at 1817.816 kb on + strand, within EX28DRAFT_1803 at 1817.845 kb on - strand, within EX28DRAFT_1803 at 1817.845 kb on - strand, within EX28DRAFT_1803 at 1818.048 kb on + strand, within EX28DRAFT_1803 at 1818.365 kb on - strand, within EX28DRAFT_1803 at 1818.521 kb on + strand at 1818.572 kb on - strand at 1818.572 kb on - strand at 1818.572 kb on - strand at 1818.594 kb on + strand at 1818.615 kb on - strand at 1818.619 kb on + strand at 1818.620 kb on - strand at 1818.728 kb on + strand at 1818.729 kb on - strand at 1818.745 kb on - strand at 1818.750 kb on + strand at 1818.751 kb on - strand at 1818.756 kb on - strand at 1818.834 kb on + strand at 1818.834 kb on + strand at 1818.874 kb on - strand at 1819.150 kb on + strand, within EX28DRAFT_1804 at 1819.167 kb on - strand, within EX28DRAFT_1804 at 1819.445 kb on - strand, within EX28DRAFT_1804 at 1819.445 kb on - strand, within EX28DRAFT_1804 at 1819.581 kb on - strand, within EX28DRAFT_1804
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,816,475 + EX28DRAFT_1802 0.25 +0.1 1,816,476 - EX28DRAFT_1802 0.26 -0.3 1,816,553 + EX28DRAFT_1802 0.32 +0.5 1,816,553 + EX28DRAFT_1802 0.32 +0.0 1,816,574 - EX28DRAFT_1802 0.34 +1.0 1,816,781 - EX28DRAFT_1802 0.53 +1.1 1,816,787 + EX28DRAFT_1802 0.53 -0.2 1,816,837 + EX28DRAFT_1802 0.58 -0.4 1,816,837 + EX28DRAFT_1802 0.58 -0.4 1,816,864 + EX28DRAFT_1802 0.60 -2.2 1,816,864 + EX28DRAFT_1802 0.60 +0.6 1,817,069 - EX28DRAFT_1802 0.78 +1.7 1,817,069 - EX28DRAFT_1802 0.78 -0.7 1,817,319 - +0.8 1,817,349 + -0.7 1,817,362 + +0.3 1,817,485 + +0.7 1,817,486 - -0.2 1,817,486 - +0.4 1,817,493 + -0.5 1,817,500 - -0.8 1,817,633 - EX28DRAFT_1803 0.19 +0.8 1,817,667 + EX28DRAFT_1803 0.22 -0.3 1,817,667 + EX28DRAFT_1803 0.22 -0.1 1,817,668 - EX28DRAFT_1803 0.22 -0.6 1,817,670 + EX28DRAFT_1803 0.22 -0.3 1,817,670 + EX28DRAFT_1803 0.22 -0.7 1,817,671 - EX28DRAFT_1803 0.22 -1.3 1,817,671 - EX28DRAFT_1803 0.22 +0.7 1,817,671 - EX28DRAFT_1803 0.22 -0.9 1,817,696 - EX28DRAFT_1803 0.24 -1.7 1,817,696 - EX28DRAFT_1803 0.24 +0.2 1,817,697 + EX28DRAFT_1803 0.24 -0.2 1,817,697 + EX28DRAFT_1803 0.24 -1.3 1,817,698 - EX28DRAFT_1803 0.24 -0.4 1,817,711 + EX28DRAFT_1803 0.25 -1.0 1,817,797 - EX28DRAFT_1803 0.32 +0.1 1,817,797 - EX28DRAFT_1803 0.32 +0.2 1,817,816 + EX28DRAFT_1803 0.34 -2.1 1,817,845 - EX28DRAFT_1803 0.36 +0.3 1,817,845 - EX28DRAFT_1803 0.36 +1.4 1,818,048 + EX28DRAFT_1803 0.53 +0.2 1,818,365 - EX28DRAFT_1803 0.79 +0.0 1,818,521 + +0.1 1,818,572 - +0.6 1,818,572 - -0.9 1,818,572 - -0.8 1,818,594 + -0.3 1,818,615 - -1.9 1,818,619 + +0.7 1,818,620 - +0.5 1,818,728 + -0.0 1,818,729 - -0.7 1,818,745 - +0.2 1,818,750 + -0.9 1,818,751 - -0.1 1,818,756 - -0.5 1,818,834 + -0.5 1,818,834 + +1.8 1,818,874 - +0.1 1,819,150 + EX28DRAFT_1804 0.21 +1.0 1,819,167 - EX28DRAFT_1804 0.22 +0.1 1,819,445 - EX28DRAFT_1804 0.48 +0.4 1,819,445 - EX28DRAFT_1804 0.48 +1.7 1,819,581 - EX28DRAFT_1804 0.60 +0.9
Or see this region's nucleotide sequence