Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1792

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1791 and EX28DRAFT_1792 are separated by 290 nucleotidesEX28DRAFT_1792 and EX28DRAFT_1793 are separated by 74 nucleotidesEX28DRAFT_1793 and EX28DRAFT_1794 are separated by 77 nucleotides EX28DRAFT_1791: EX28DRAFT_1791 - Predicted signal transduction protein containing sensor and EAL domains, at 1,805,599 to 1,807,098 _1791 EX28DRAFT_1792: EX28DRAFT_1792 - Protein of unknown function (DUF2543), at 1,807,389 to 1,807,634 _1792 EX28DRAFT_1793: EX28DRAFT_1793 - Predicted membrane protein, at 1,807,709 to 1,808,056 _1793 EX28DRAFT_1794: EX28DRAFT_1794 - isocitrate dehydrogenase (NADP) (EC 1.1.1.42), at 1,808,134 to 1,809,384 _1794 Position (kb) 1807 1808Strain fitness (log2 ratio) -1 0 1at 1806.547 kb on - strand, within EX28DRAFT_1791at 1806.794 kb on + strand, within EX28DRAFT_1791at 1806.899 kb on - strand, within EX28DRAFT_1791at 1807.097 kb on - strandat 1807.162 kb on + strandat 1807.182 kb on + strandat 1807.228 kb on + strandat 1807.229 kb on - strandat 1807.235 kb on - strandat 1807.237 kb on + strandat 1807.237 kb on + strandat 1807.238 kb on - strandat 1807.390 kb on + strandat 1807.531 kb on + strand, within EX28DRAFT_1792at 1807.532 kb on - strand, within EX28DRAFT_1792at 1807.588 kb on + strand, within EX28DRAFT_1792at 1807.674 kb on + strandat 1807.674 kb on + strandat 1807.674 kb on + strandat 1807.674 kb on + strandat 1807.675 kb on - strandat 1807.675 kb on - strandat 1807.688 kb on + strandat 1807.689 kb on - strandat 1807.755 kb on - strand, within EX28DRAFT_1793at 1807.755 kb on - strand, within EX28DRAFT_1793at 1807.755 kb on - strand, within EX28DRAFT_1793at 1807.759 kb on - strand, within EX28DRAFT_1793at 1807.759 kb on - strand, within EX28DRAFT_1793at 1807.759 kb on - strand, within EX28DRAFT_1793at 1807.759 kb on - strand, within EX28DRAFT_1793at 1807.896 kb on + strand, within EX28DRAFT_1793at 1807.896 kb on + strand, within EX28DRAFT_1793at 1807.896 kb on + strand, within EX28DRAFT_1793at 1807.897 kb on - strand, within EX28DRAFT_1793at 1807.897 kb on - strand, within EX28DRAFT_1793at 1807.897 kb on - strand, within EX28DRAFT_1793at 1807.897 kb on - strand, within EX28DRAFT_1793at 1808.011 kb on - strand, within EX28DRAFT_1793at 1808.011 kb on - strand, within EX28DRAFT_1793at 1808.118 kb on + strandat 1808.119 kb on - strandat 1808.136 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,806,547 - EX28DRAFT_1791 0.63 +0.3
1,806,794 + EX28DRAFT_1791 0.80 -0.7
1,806,899 - EX28DRAFT_1791 0.87 -0.8
1,807,097 - -0.1
1,807,162 + +0.2
1,807,182 + -0.0
1,807,228 + +0.4
1,807,229 - +0.6
1,807,235 - -0.1
1,807,237 + +0.7
1,807,237 + -0.2
1,807,238 - +0.1
1,807,390 + -0.0
1,807,531 + EX28DRAFT_1792 0.58 +0.5
1,807,532 - EX28DRAFT_1792 0.58 +1.7
1,807,588 + EX28DRAFT_1792 0.81 -0.4
1,807,674 + +0.5
1,807,674 + +0.2
1,807,674 + -0.1
1,807,674 + +0.2
1,807,675 - +0.7
1,807,675 - +0.3
1,807,688 + +0.7
1,807,689 - -1.0
1,807,755 - EX28DRAFT_1793 0.13 +0.9
1,807,755 - EX28DRAFT_1793 0.13 +0.1
1,807,755 - EX28DRAFT_1793 0.13 +0.0
1,807,759 - EX28DRAFT_1793 0.14 -0.5
1,807,759 - EX28DRAFT_1793 0.14 -0.2
1,807,759 - EX28DRAFT_1793 0.14 -1.3
1,807,759 - EX28DRAFT_1793 0.14 +0.7
1,807,896 + EX28DRAFT_1793 0.54 +0.5
1,807,896 + EX28DRAFT_1793 0.54 +0.2
1,807,896 + EX28DRAFT_1793 0.54 -1.0
1,807,897 - EX28DRAFT_1793 0.54 +0.0
1,807,897 - EX28DRAFT_1793 0.54 +0.5
1,807,897 - EX28DRAFT_1793 0.54 +0.5
1,807,897 - EX28DRAFT_1793 0.54 -0.1
1,808,011 - EX28DRAFT_1793 0.87 +0.7
1,808,011 - EX28DRAFT_1793 0.87 -0.1
1,808,118 + -0.3
1,808,119 - -0.5
1,808,136 - -0.5

Or see this region's nucleotide sequence