Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1791 and EX28DRAFT_1792 are separated by 290 nucleotides EX28DRAFT_1792 and EX28DRAFT_1793 are separated by 74 nucleotides EX28DRAFT_1793 and EX28DRAFT_1794 are separated by 77 nucleotides
EX28DRAFT_1791: EX28DRAFT_1791 - Predicted signal transduction protein containing sensor and EAL domains, at 1,805,599 to 1,807,098
_1791
EX28DRAFT_1792: EX28DRAFT_1792 - Protein of unknown function (DUF2543), at 1,807,389 to 1,807,634
_1792
EX28DRAFT_1793: EX28DRAFT_1793 - Predicted membrane protein, at 1,807,709 to 1,808,056
_1793
EX28DRAFT_1794: EX28DRAFT_1794 - isocitrate dehydrogenase (NADP) (EC 1.1.1.42), at 1,808,134 to 1,809,384
_1794
Position (kb)
1807
1808 Strain fitness (log2 ratio)
-1
0
1 at 1806.547 kb on - strand, within EX28DRAFT_1791 at 1806.794 kb on + strand, within EX28DRAFT_1791 at 1806.899 kb on - strand, within EX28DRAFT_1791 at 1807.097 kb on - strand at 1807.162 kb on + strand at 1807.182 kb on + strand at 1807.228 kb on + strand at 1807.229 kb on - strand at 1807.235 kb on - strand at 1807.237 kb on + strand at 1807.237 kb on + strand at 1807.238 kb on - strand at 1807.390 kb on + strand at 1807.531 kb on + strand, within EX28DRAFT_1792 at 1807.532 kb on - strand, within EX28DRAFT_1792 at 1807.588 kb on + strand, within EX28DRAFT_1792 at 1807.674 kb on + strand at 1807.674 kb on + strand at 1807.674 kb on + strand at 1807.674 kb on + strand at 1807.675 kb on - strand at 1807.675 kb on - strand at 1807.688 kb on + strand at 1807.689 kb on - strand at 1807.755 kb on - strand, within EX28DRAFT_1793 at 1807.755 kb on - strand, within EX28DRAFT_1793 at 1807.755 kb on - strand, within EX28DRAFT_1793 at 1807.759 kb on - strand, within EX28DRAFT_1793 at 1807.759 kb on - strand, within EX28DRAFT_1793 at 1807.759 kb on - strand, within EX28DRAFT_1793 at 1807.759 kb on - strand, within EX28DRAFT_1793 at 1807.896 kb on + strand, within EX28DRAFT_1793 at 1807.896 kb on + strand, within EX28DRAFT_1793 at 1807.896 kb on + strand, within EX28DRAFT_1793 at 1807.897 kb on - strand, within EX28DRAFT_1793 at 1807.897 kb on - strand, within EX28DRAFT_1793 at 1807.897 kb on - strand, within EX28DRAFT_1793 at 1807.897 kb on - strand, within EX28DRAFT_1793 at 1808.011 kb on - strand, within EX28DRAFT_1793 at 1808.011 kb on - strand, within EX28DRAFT_1793 at 1808.118 kb on + strand at 1808.119 kb on - strand at 1808.136 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,806,547 - EX28DRAFT_1791 0.63 +0.3 1,806,794 + EX28DRAFT_1791 0.80 -0.7 1,806,899 - EX28DRAFT_1791 0.87 -0.8 1,807,097 - -0.1 1,807,162 + +0.2 1,807,182 + -0.0 1,807,228 + +0.4 1,807,229 - +0.6 1,807,235 - -0.1 1,807,237 + +0.7 1,807,237 + -0.2 1,807,238 - +0.1 1,807,390 + -0.0 1,807,531 + EX28DRAFT_1792 0.58 +0.5 1,807,532 - EX28DRAFT_1792 0.58 +1.7 1,807,588 + EX28DRAFT_1792 0.81 -0.4 1,807,674 + +0.5 1,807,674 + +0.2 1,807,674 + -0.1 1,807,674 + +0.2 1,807,675 - +0.7 1,807,675 - +0.3 1,807,688 + +0.7 1,807,689 - -1.0 1,807,755 - EX28DRAFT_1793 0.13 +0.9 1,807,755 - EX28DRAFT_1793 0.13 +0.1 1,807,755 - EX28DRAFT_1793 0.13 +0.0 1,807,759 - EX28DRAFT_1793 0.14 -0.5 1,807,759 - EX28DRAFT_1793 0.14 -0.2 1,807,759 - EX28DRAFT_1793 0.14 -1.3 1,807,759 - EX28DRAFT_1793 0.14 +0.7 1,807,896 + EX28DRAFT_1793 0.54 +0.5 1,807,896 + EX28DRAFT_1793 0.54 +0.2 1,807,896 + EX28DRAFT_1793 0.54 -1.0 1,807,897 - EX28DRAFT_1793 0.54 +0.0 1,807,897 - EX28DRAFT_1793 0.54 +0.5 1,807,897 - EX28DRAFT_1793 0.54 +0.5 1,807,897 - EX28DRAFT_1793 0.54 -0.1 1,808,011 - EX28DRAFT_1793 0.87 +0.7 1,808,011 - EX28DRAFT_1793 0.87 -0.1 1,808,118 + -0.3 1,808,119 - -0.5 1,808,136 - -0.5
Or see this region's nucleotide sequence