Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1742

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1741 and EX28DRAFT_1742 are separated by 79 nucleotidesEX28DRAFT_1742 and EX28DRAFT_1743 are separated by 280 nucleotidesEX28DRAFT_1743 and EX28DRAFT_1744 are separated by 232 nucleotides EX28DRAFT_1741: EX28DRAFT_1741 - phosphotransferase system, cellobiose specific, IIC component, at 1,756,108 to 1,757,466 _1741 EX28DRAFT_1742: EX28DRAFT_1742 - PTS system, lactose/cellobiose family IIB component, at 1,757,546 to 1,757,863 _1742 EX28DRAFT_1743: EX28DRAFT_1743 - SmpA / OmlA family, at 1,758,144 to 1,758,488 _1743 EX28DRAFT_1744: EX28DRAFT_1744 - NAD+ synthetase, at 1,758,721 to 1,759,548 _1744 Position (kb) 1757 1758Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1756.563 kb on + strand, within EX28DRAFT_1741at 1756.565 kb on + strand, within EX28DRAFT_1741at 1756.565 kb on + strand, within EX28DRAFT_1741at 1756.565 kb on + strand, within EX28DRAFT_1741at 1756.565 kb on + strand, within EX28DRAFT_1741at 1756.566 kb on - strand, within EX28DRAFT_1741at 1756.566 kb on - strand, within EX28DRAFT_1741at 1756.681 kb on - strand, within EX28DRAFT_1741at 1756.758 kb on - strand, within EX28DRAFT_1741at 1756.803 kb on + strand, within EX28DRAFT_1741at 1756.804 kb on - strand, within EX28DRAFT_1741at 1756.882 kb on - strand, within EX28DRAFT_1741at 1756.971 kb on + strand, within EX28DRAFT_1741at 1756.971 kb on + strand, within EX28DRAFT_1741at 1756.971 kb on + strand, within EX28DRAFT_1741at 1756.972 kb on - strand, within EX28DRAFT_1741at 1757.058 kb on - strand, within EX28DRAFT_1741at 1757.110 kb on + strand, within EX28DRAFT_1741at 1757.187 kb on + strand, within EX28DRAFT_1741at 1757.199 kb on + strand, within EX28DRAFT_1741at 1757.200 kb on - strand, within EX28DRAFT_1741at 1757.276 kb on - strand, within EX28DRAFT_1741at 1757.282 kb on + strand, within EX28DRAFT_1741at 1757.323 kb on - strand, within EX28DRAFT_1741at 1757.411 kb on - strandat 1757.461 kb on - strandat 1757.481 kb on - strandat 1757.585 kb on - strand, within EX28DRAFT_1742at 1757.677 kb on + strand, within EX28DRAFT_1742at 1757.677 kb on + strand, within EX28DRAFT_1742at 1757.677 kb on + strand, within EX28DRAFT_1742at 1757.677 kb on + strand, within EX28DRAFT_1742at 1757.679 kb on + strand, within EX28DRAFT_1742at 1757.845 kb on - strandat 1757.845 kb on - strandat 1757.848 kb on + strandat 1757.848 kb on + strandat 1757.848 kb on + strandat 1757.848 kb on + strandat 1757.848 kb on + strandat 1757.849 kb on - strandat 1757.849 kb on - strandat 1757.877 kb on + strandat 1757.877 kb on + strandat 1757.877 kb on + strandat 1757.878 kb on - strandat 1757.879 kb on + strandat 1757.880 kb on - strandat 1757.880 kb on - strandat 1757.880 kb on - strandat 1757.880 kb on - strandat 1757.880 kb on - strandat 1757.932 kb on - strandat 1757.932 kb on - strandat 1757.941 kb on - strandat 1757.965 kb on + strandat 1757.966 kb on - strandat 1757.967 kb on + strandat 1757.968 kb on - strandat 1757.968 kb on - strandat 1757.968 kb on - strandat 1757.968 kb on - strandat 1758.156 kb on - strandat 1758.241 kb on + strand, within EX28DRAFT_1743at 1758.241 kb on + strand, within EX28DRAFT_1743at 1758.242 kb on - strand, within EX28DRAFT_1743at 1758.275 kb on + strand, within EX28DRAFT_1743at 1758.275 kb on + strand, within EX28DRAFT_1743at 1758.275 kb on + strand, within EX28DRAFT_1743at 1758.277 kb on + strand, within EX28DRAFT_1743at 1758.277 kb on + strand, within EX28DRAFT_1743at 1758.277 kb on + strand, within EX28DRAFT_1743at 1758.278 kb on - strand, within EX28DRAFT_1743at 1758.278 kb on - strand, within EX28DRAFT_1743at 1758.382 kb on - strand, within EX28DRAFT_1743at 1758.385 kb on - strand, within EX28DRAFT_1743at 1758.425 kb on + strand, within EX28DRAFT_1743at 1758.440 kb on + strand, within EX28DRAFT_1743at 1758.440 kb on + strand, within EX28DRAFT_1743at 1758.475 kb on - strandat 1758.475 kb on - strandat 1758.475 kb on - strandat 1758.521 kb on - strandat 1758.542 kb on - strandat 1758.683 kb on + strandat 1758.697 kb on + strandat 1758.701 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
1,756,563 + EX28DRAFT_1741 0.33 -0.4
1,756,565 + EX28DRAFT_1741 0.34 +0.0
1,756,565 + EX28DRAFT_1741 0.34 +0.6
1,756,565 + EX28DRAFT_1741 0.34 -0.4
1,756,565 + EX28DRAFT_1741 0.34 +0.7
1,756,566 - EX28DRAFT_1741 0.34 +0.1
1,756,566 - EX28DRAFT_1741 0.34 -0.3
1,756,681 - EX28DRAFT_1741 0.42 -0.4
1,756,758 - EX28DRAFT_1741 0.48 -0.2
1,756,803 + EX28DRAFT_1741 0.51 +0.2
1,756,804 - EX28DRAFT_1741 0.51 -0.2
1,756,882 - EX28DRAFT_1741 0.57 +0.1
1,756,971 + EX28DRAFT_1741 0.64 +0.8
1,756,971 + EX28DRAFT_1741 0.64 -0.6
1,756,971 + EX28DRAFT_1741 0.64 +0.5
1,756,972 - EX28DRAFT_1741 0.64 +0.1
1,757,058 - EX28DRAFT_1741 0.70 +0.3
1,757,110 + EX28DRAFT_1741 0.74 +0.2
1,757,187 + EX28DRAFT_1741 0.79 -0.5
1,757,199 + EX28DRAFT_1741 0.80 +0.9
1,757,200 - EX28DRAFT_1741 0.80 +0.1
1,757,276 - EX28DRAFT_1741 0.86 +0.8
1,757,282 + EX28DRAFT_1741 0.86 +0.2
1,757,323 - EX28DRAFT_1741 0.89 +0.1
1,757,411 - +1.2
1,757,461 - -0.2
1,757,481 - -0.7
1,757,585 - EX28DRAFT_1742 0.12 -1.4
1,757,677 + EX28DRAFT_1742 0.41 -2.0
1,757,677 + EX28DRAFT_1742 0.41 +0.5
1,757,677 + EX28DRAFT_1742 0.41 -1.9
1,757,677 + EX28DRAFT_1742 0.41 -0.4
1,757,679 + EX28DRAFT_1742 0.42 -1.6
1,757,845 - -0.5
1,757,845 - -2.2
1,757,848 + -0.1
1,757,848 + +1.5
1,757,848 + +1.2
1,757,848 + -0.4
1,757,848 + +2.3
1,757,849 - +0.3
1,757,849 - -0.1
1,757,877 + -0.4
1,757,877 + -0.5
1,757,877 + -1.7
1,757,878 - -0.4
1,757,879 + +0.3
1,757,880 - -0.5
1,757,880 - -0.1
1,757,880 - +0.7
1,757,880 - +1.0
1,757,880 - -4.6
1,757,932 - -0.4
1,757,932 - -0.5
1,757,941 - -1.5
1,757,965 + -0.1
1,757,966 - -1.1
1,757,967 + +0.2
1,757,968 - +0.2
1,757,968 - +0.1
1,757,968 - -2.0
1,757,968 - -0.3
1,758,156 - +0.1
1,758,241 + EX28DRAFT_1743 0.28 -0.3
1,758,241 + EX28DRAFT_1743 0.28 +0.5
1,758,242 - EX28DRAFT_1743 0.28 -0.3
1,758,275 + EX28DRAFT_1743 0.38 -0.4
1,758,275 + EX28DRAFT_1743 0.38 -3.2
1,758,275 + EX28DRAFT_1743 0.38 -0.4
1,758,277 + EX28DRAFT_1743 0.39 +0.1
1,758,277 + EX28DRAFT_1743 0.39 +0.9
1,758,277 + EX28DRAFT_1743 0.39 -0.4
1,758,278 - EX28DRAFT_1743 0.39 +0.0
1,758,278 - EX28DRAFT_1743 0.39 +0.4
1,758,382 - EX28DRAFT_1743 0.69 -0.5
1,758,385 - EX28DRAFT_1743 0.70 +0.3
1,758,425 + EX28DRAFT_1743 0.81 +1.1
1,758,440 + EX28DRAFT_1743 0.86 +0.4
1,758,440 + EX28DRAFT_1743 0.86 -0.3
1,758,475 - +0.2
1,758,475 - -0.4
1,758,475 - +1.5
1,758,521 - +0.6
1,758,542 - -0.5
1,758,683 + -0.2
1,758,697 + +0.8
1,758,701 + +0.1

Or see this region's nucleotide sequence