Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1734

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1732 and EX28DRAFT_1733 are separated by 101 nucleotidesEX28DRAFT_1733 and EX28DRAFT_1734 are separated by 127 nucleotidesEX28DRAFT_1734 and EX28DRAFT_1735 are separated by 48 nucleotidesEX28DRAFT_1735 and EX28DRAFT_1736 are separated by 50 nucleotides EX28DRAFT_1732: EX28DRAFT_1732 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 1,746,886 to 1,747,557 _1732 EX28DRAFT_1733: EX28DRAFT_1733 - Predicted membrane-bound metal-dependent hydrolases, at 1,747,659 to 1,748,249 _1733 EX28DRAFT_1734: EX28DRAFT_1734 - Predicted Na+/dicarboxylate symporter, at 1,748,377 to 1,749,768 _1734 EX28DRAFT_1735: EX28DRAFT_1735 - Cell division activator CedA, at 1,749,817 to 1,750,209 _1735 EX28DRAFT_1736: EX28DRAFT_1736 - Catalase, at 1,750,260 to 1,752,509 _1736 Position (kb) 1748 1749 1750Strain fitness (log2 ratio) -1 0 1at 1747.512 kb on + strandat 1747.512 kb on + strandat 1747.612 kb on + strandat 1747.623 kb on + strandat 1747.626 kb on - strandat 1747.656 kb on - strandat 1747.702 kb on + strandat 1747.703 kb on - strandat 1747.757 kb on + strand, within EX28DRAFT_1733at 1747.757 kb on + strand, within EX28DRAFT_1733at 1747.758 kb on - strand, within EX28DRAFT_1733at 1747.758 kb on - strand, within EX28DRAFT_1733at 1747.808 kb on + strand, within EX28DRAFT_1733at 1747.987 kb on - strand, within EX28DRAFT_1733at 1747.991 kb on - strand, within EX28DRAFT_1733at 1748.131 kb on - strand, within EX28DRAFT_1733at 1748.226 kb on - strandat 1748.294 kb on - strandat 1748.359 kb on + strandat 1748.360 kb on - strandat 1748.417 kb on + strandat 1748.417 kb on + strandat 1748.417 kb on + strandat 1748.418 kb on - strandat 1748.418 kb on - strandat 1748.418 kb on - strandat 1748.424 kb on - strandat 1748.501 kb on + strandat 1748.528 kb on - strand, within EX28DRAFT_1734at 1748.559 kb on + strand, within EX28DRAFT_1734at 1748.559 kb on + strand, within EX28DRAFT_1734at 1748.560 kb on - strand, within EX28DRAFT_1734at 1748.627 kb on + strand, within EX28DRAFT_1734at 1748.638 kb on - strand, within EX28DRAFT_1734at 1748.836 kb on + strand, within EX28DRAFT_1734at 1748.836 kb on + strand, within EX28DRAFT_1734at 1748.836 kb on + strand, within EX28DRAFT_1734at 1748.836 kb on + strand, within EX28DRAFT_1734at 1748.836 kb on + strand, within EX28DRAFT_1734at 1748.837 kb on - strand, within EX28DRAFT_1734at 1748.837 kb on - strand, within EX28DRAFT_1734at 1748.837 kb on - strand, within EX28DRAFT_1734at 1748.837 kb on - strand, within EX28DRAFT_1734at 1748.837 kb on - strand, within EX28DRAFT_1734at 1749.195 kb on + strand, within EX28DRAFT_1734at 1749.195 kb on + strand, within EX28DRAFT_1734at 1749.196 kb on - strand, within EX28DRAFT_1734at 1749.819 kb on - strandat 1749.933 kb on - strand, within EX28DRAFT_1735at 1749.933 kb on - strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.020 kb on + strand, within EX28DRAFT_1735at 1750.020 kb on + strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.023 kb on + strand, within EX28DRAFT_1735at 1750.102 kb on - strand, within EX28DRAFT_1735at 1750.197 kb on + strandat 1750.197 kb on + strandat 1750.198 kb on - strandat 1750.215 kb on + strandat 1750.216 kb on - strandat 1750.222 kb on - strandat 1750.224 kb on + strandat 1750.394 kb on + strandat 1750.394 kb on + strandat 1750.668 kb on + strand, within EX28DRAFT_1736at 1750.754 kb on - strand, within EX28DRAFT_1736

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,747,512 + +0.2
1,747,512 + -0.1
1,747,612 + +0.2
1,747,623 + +0.2
1,747,626 - +0.3
1,747,656 - -0.4
1,747,702 + -0.2
1,747,703 - +1.7
1,747,757 + EX28DRAFT_1733 0.17 -0.2
1,747,757 + EX28DRAFT_1733 0.17 +0.2
1,747,758 - EX28DRAFT_1733 0.17 +1.7
1,747,758 - EX28DRAFT_1733 0.17 -0.1
1,747,808 + EX28DRAFT_1733 0.25 +1.4
1,747,987 - EX28DRAFT_1733 0.55 -0.1
1,747,991 - EX28DRAFT_1733 0.56 +0.6
1,748,131 - EX28DRAFT_1733 0.80 +0.6
1,748,226 - +0.2
1,748,294 - +0.8
1,748,359 + +0.1
1,748,360 - -1.2
1,748,417 + +0.3
1,748,417 + +0.1
1,748,417 + +0.2
1,748,418 - +0.0
1,748,418 - -0.4
1,748,418 - -0.6
1,748,424 - +0.1
1,748,501 + +0.3
1,748,528 - EX28DRAFT_1734 0.11 +0.4
1,748,559 + EX28DRAFT_1734 0.13 +0.1
1,748,559 + EX28DRAFT_1734 0.13 +0.4
1,748,560 - EX28DRAFT_1734 0.13 +1.3
1,748,627 + EX28DRAFT_1734 0.18 +0.8
1,748,638 - EX28DRAFT_1734 0.19 +1.2
1,748,836 + EX28DRAFT_1734 0.33 +0.5
1,748,836 + EX28DRAFT_1734 0.33 +0.6
1,748,836 + EX28DRAFT_1734 0.33 -0.4
1,748,836 + EX28DRAFT_1734 0.33 +0.6
1,748,836 + EX28DRAFT_1734 0.33 +0.2
1,748,837 - EX28DRAFT_1734 0.33 +1.0
1,748,837 - EX28DRAFT_1734 0.33 +0.7
1,748,837 - EX28DRAFT_1734 0.33 +0.5
1,748,837 - EX28DRAFT_1734 0.33 +0.4
1,748,837 - EX28DRAFT_1734 0.33 +0.2
1,749,195 + EX28DRAFT_1734 0.59 +0.3
1,749,195 + EX28DRAFT_1734 0.59 -0.2
1,749,196 - EX28DRAFT_1734 0.59 -1.4
1,749,819 - -0.7
1,749,933 - EX28DRAFT_1735 0.30 +0.1
1,749,933 - EX28DRAFT_1735 0.30 -0.4
1,750,016 + EX28DRAFT_1735 0.51 -0.8
1,750,016 + EX28DRAFT_1735 0.51 -0.3
1,750,016 + EX28DRAFT_1735 0.51 -0.6
1,750,016 + EX28DRAFT_1735 0.51 +0.7
1,750,016 + EX28DRAFT_1735 0.51 -1.0
1,750,016 + EX28DRAFT_1735 0.51 +0.5
1,750,016 + EX28DRAFT_1735 0.51 +1.1
1,750,017 - EX28DRAFT_1735 0.51 -1.4
1,750,017 - EX28DRAFT_1735 0.51 +0.2
1,750,017 - EX28DRAFT_1735 0.51 +0.5
1,750,017 - EX28DRAFT_1735 0.51 +0.4
1,750,017 - EX28DRAFT_1735 0.51 +1.4
1,750,017 - EX28DRAFT_1735 0.51 -0.3
1,750,020 + EX28DRAFT_1735 0.52 -0.4
1,750,020 + EX28DRAFT_1735 0.52 -0.4
1,750,021 - EX28DRAFT_1735 0.52 -0.1
1,750,021 - EX28DRAFT_1735 0.52 +0.6
1,750,021 - EX28DRAFT_1735 0.52 +0.3
1,750,021 - EX28DRAFT_1735 0.52 +0.3
1,750,021 - EX28DRAFT_1735 0.52 -0.1
1,750,021 - EX28DRAFT_1735 0.52 +0.8
1,750,023 + EX28DRAFT_1735 0.52 +0.1
1,750,102 - EX28DRAFT_1735 0.73 +0.3
1,750,197 + +0.7
1,750,197 + -0.4
1,750,198 - +0.5
1,750,215 + -0.7
1,750,216 - -0.2
1,750,222 - -0.2
1,750,224 + +0.3
1,750,394 + -1.1
1,750,394 + -0.5
1,750,668 + EX28DRAFT_1736 0.18 -0.7
1,750,754 - EX28DRAFT_1736 0.22 +0.2

Or see this region's nucleotide sequence