Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1705

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1704 and EX28DRAFT_1705 are separated by 335 nucleotidesEX28DRAFT_1705 and EX28DRAFT_1706 are separated by 152 nucleotides EX28DRAFT_1704: EX28DRAFT_1704 - phosphoenolpyruvate synthase (EC 2.7.9.2), at 1,718,840 to 1,721,218 _1704 EX28DRAFT_1705: EX28DRAFT_1705 - Uncharacterized protein conserved in bacteria, at 1,721,554 to 1,722,387 _1705 EX28DRAFT_1706: EX28DRAFT_1706 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 1,722,540 to 1,723,586 _1706 Position (kb) 1721 1722 1723Strain fitness (log2 ratio) -2 -1 0 1at 1720.559 kb on - strand, within EX28DRAFT_1704at 1720.816 kb on + strand, within EX28DRAFT_1704at 1720.987 kb on + strandat 1721.010 kb on + strandat 1721.157 kb on - strandat 1721.182 kb on - strandat 1721.267 kb on - strandat 1721.267 kb on - strandat 1721.270 kb on + strandat 1721.270 kb on + strandat 1721.270 kb on + strandat 1721.271 kb on - strandat 1721.275 kb on - strandat 1721.285 kb on - strandat 1721.288 kb on + strandat 1721.289 kb on - strandat 1721.528 kb on + strandat 1721.584 kb on + strandat 1721.732 kb on - strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.764 kb on + strand, within EX28DRAFT_1705at 1721.765 kb on - strand, within EX28DRAFT_1705at 1721.765 kb on - strand, within EX28DRAFT_1705at 1721.769 kb on + strand, within EX28DRAFT_1705at 1721.770 kb on - strand, within EX28DRAFT_1705at 1721.925 kb on + strand, within EX28DRAFT_1705at 1721.925 kb on + strand, within EX28DRAFT_1705at 1721.957 kb on - strand, within EX28DRAFT_1705at 1722.058 kb on + strand, within EX28DRAFT_1705at 1722.322 kb on + strandat 1722.323 kb on - strandat 1722.323 kb on - strandat 1722.396 kb on + strandat 1722.416 kb on + strandat 1722.545 kb on + strandat 1722.546 kb on - strandat 1722.546 kb on - strandat 1722.751 kb on - strand, within EX28DRAFT_1706at 1722.817 kb on - strand, within EX28DRAFT_1706at 1722.928 kb on + strand, within EX28DRAFT_1706at 1722.929 kb on - strand, within EX28DRAFT_1706at 1723.197 kb on + strand, within EX28DRAFT_1706at 1723.198 kb on - strand, within EX28DRAFT_1706at 1723.232 kb on + strand, within EX28DRAFT_1706at 1723.233 kb on - strand, within EX28DRAFT_1706at 1723.257 kb on + strand, within EX28DRAFT_1706at 1723.257 kb on + strand, within EX28DRAFT_1706at 1723.271 kb on + strand, within EX28DRAFT_1706

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,720,559 - EX28DRAFT_1704 0.72 +0.4
1,720,816 + EX28DRAFT_1704 0.83 -0.2
1,720,987 + +0.0
1,721,010 + +0.0
1,721,157 - +0.8
1,721,182 - +0.3
1,721,267 - -0.7
1,721,267 - +0.2
1,721,270 + -2.2
1,721,270 + -0.5
1,721,270 + -0.2
1,721,271 - +1.5
1,721,275 - +0.4
1,721,285 - +0.0
1,721,288 + -1.2
1,721,289 - +0.3
1,721,528 + +0.0
1,721,584 + +0.6
1,721,732 - EX28DRAFT_1705 0.21 -0.5
1,721,764 + EX28DRAFT_1705 0.25 -0.6
1,721,764 + EX28DRAFT_1705 0.25 -0.5
1,721,764 + EX28DRAFT_1705 0.25 +0.7
1,721,764 + EX28DRAFT_1705 0.25 -0.5
1,721,764 + EX28DRAFT_1705 0.25 +0.5
1,721,764 + EX28DRAFT_1705 0.25 +0.7
1,721,765 - EX28DRAFT_1705 0.25 +0.2
1,721,765 - EX28DRAFT_1705 0.25 +0.1
1,721,769 + EX28DRAFT_1705 0.26 -0.4
1,721,770 - EX28DRAFT_1705 0.26 -1.4
1,721,925 + EX28DRAFT_1705 0.44 -0.3
1,721,925 + EX28DRAFT_1705 0.44 +0.4
1,721,957 - EX28DRAFT_1705 0.48 -0.5
1,722,058 + EX28DRAFT_1705 0.60 -0.8
1,722,322 + +0.4
1,722,323 - +0.1
1,722,323 - -0.3
1,722,396 + -0.4
1,722,416 + +0.6
1,722,545 + -0.4
1,722,546 - -0.4
1,722,546 - +0.6
1,722,751 - EX28DRAFT_1706 0.20 -0.3
1,722,817 - EX28DRAFT_1706 0.26 -0.3
1,722,928 + EX28DRAFT_1706 0.37 -0.2
1,722,929 - EX28DRAFT_1706 0.37 -2.4
1,723,197 + EX28DRAFT_1706 0.63 -0.8
1,723,198 - EX28DRAFT_1706 0.63 -0.5
1,723,232 + EX28DRAFT_1706 0.66 +1.6
1,723,233 - EX28DRAFT_1706 0.66 -0.2
1,723,257 + EX28DRAFT_1706 0.68 -0.2
1,723,257 + EX28DRAFT_1706 0.68 -0.7
1,723,271 + EX28DRAFT_1706 0.70 -0.0

Or see this region's nucleotide sequence