Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1686 and EX28DRAFT_1687 are separated by 8 nucleotides EX28DRAFT_1687 and EX28DRAFT_1688 are separated by 313 nucleotides
EX28DRAFT_1686: EX28DRAFT_1686 - FeS assembly protein SufB, at 1,698,441 to 1,699,931
_1686
EX28DRAFT_1687: EX28DRAFT_1687 - FeS assembly scaffold SufA, at 1,699,940 to 1,700,308
_1687
EX28DRAFT_1688: EX28DRAFT_1688 - MerR HTH family regulatory protein, at 1,700,622 to 1,701,350
_1688
Position (kb)
1699
1700
1701 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1699.088 kb on - strand, within EX28DRAFT_1686 at 1699.088 kb on - strand, within EX28DRAFT_1686 at 1699.144 kb on + strand, within EX28DRAFT_1686 at 1699.258 kb on + strand, within EX28DRAFT_1686 at 1699.258 kb on + strand, within EX28DRAFT_1686 at 1699.300 kb on + strand, within EX28DRAFT_1686 at 1699.301 kb on - strand, within EX28DRAFT_1686 at 1699.301 kb on - strand, within EX28DRAFT_1686 at 1699.301 kb on - strand, within EX28DRAFT_1686 at 1699.304 kb on + strand, within EX28DRAFT_1686 at 1699.305 kb on - strand, within EX28DRAFT_1686 at 1699.305 kb on - strand, within EX28DRAFT_1686 at 1699.305 kb on - strand, within EX28DRAFT_1686 at 1699.381 kb on + strand, within EX28DRAFT_1686 at 1699.663 kb on + strand, within EX28DRAFT_1686 at 1699.664 kb on - strand, within EX28DRAFT_1686 at 1699.679 kb on - strand, within EX28DRAFT_1686 at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.870 kb on + strand at 1699.871 kb on - strand at 1699.871 kb on - strand at 1699.871 kb on - strand at 1699.899 kb on + strand at 1699.899 kb on + strand at 1699.900 kb on - strand at 1699.900 kb on - strand at 1699.900 kb on - strand at 1699.900 kb on - strand at 1699.919 kb on + strand at 1699.920 kb on - strand at 1699.922 kb on + strand at 1699.931 kb on + strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.932 kb on - strand at 1699.941 kb on + strand at 1699.942 kb on - strand at 1700.186 kb on + strand, within EX28DRAFT_1687 at 1700.227 kb on + strand, within EX28DRAFT_1687 at 1700.228 kb on - strand, within EX28DRAFT_1687 at 1700.326 kb on + strand at 1700.341 kb on + strand at 1700.420 kb on - strand at 1700.434 kb on + strand at 1700.435 kb on - strand at 1700.588 kb on + strand at 1700.991 kb on - strand, within EX28DRAFT_1688
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,699,088 - EX28DRAFT_1686 0.43 +0.3 1,699,088 - EX28DRAFT_1686 0.43 +0.1 1,699,144 + EX28DRAFT_1686 0.47 -0.0 1,699,258 + EX28DRAFT_1686 0.55 -1.6 1,699,258 + EX28DRAFT_1686 0.55 +0.0 1,699,300 + EX28DRAFT_1686 0.58 +0.6 1,699,301 - EX28DRAFT_1686 0.58 +0.6 1,699,301 - EX28DRAFT_1686 0.58 -0.2 1,699,301 - EX28DRAFT_1686 0.58 -0.1 1,699,304 + EX28DRAFT_1686 0.58 +0.6 1,699,305 - EX28DRAFT_1686 0.58 +1.2 1,699,305 - EX28DRAFT_1686 0.58 +0.7 1,699,305 - EX28DRAFT_1686 0.58 -1.0 1,699,381 + EX28DRAFT_1686 0.63 +0.6 1,699,663 + EX28DRAFT_1686 0.82 +1.3 1,699,664 - EX28DRAFT_1686 0.82 +0.2 1,699,679 - EX28DRAFT_1686 0.83 +0.4 1,699,870 + -0.3 1,699,870 + +0.5 1,699,870 + -1.6 1,699,870 + +0.1 1,699,870 + +0.7 1,699,871 - +0.2 1,699,871 - -0.0 1,699,871 - +0.9 1,699,899 + +0.8 1,699,899 + -0.6 1,699,900 - -0.3 1,699,900 - +1.2 1,699,900 - -0.8 1,699,900 - +0.2 1,699,919 + +1.1 1,699,920 - +0.0 1,699,922 + -0.4 1,699,931 + +0.0 1,699,932 - +0.8 1,699,932 - -0.4 1,699,932 - -0.1 1,699,932 - +0.0 1,699,932 - -0.4 1,699,941 + -0.2 1,699,942 - +0.6 1,700,186 + EX28DRAFT_1687 0.67 -0.6 1,700,227 + EX28DRAFT_1687 0.78 +0.9 1,700,228 - EX28DRAFT_1687 0.78 +0.6 1,700,326 + -0.8 1,700,341 + -0.1 1,700,420 - -0.3 1,700,434 + -0.1 1,700,435 - +0.2 1,700,588 + +0.3 1,700,991 - EX28DRAFT_1688 0.51 -3.0
Or see this region's nucleotide sequence