Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1657 and EX28DRAFT_1658 are separated by 297 nucleotides EX28DRAFT_1658 and EX28DRAFT_1659 are separated by 30 nucleotides EX28DRAFT_1659 and EX28DRAFT_1660 are separated by 237 nucleotides
EX28DRAFT_1657: EX28DRAFT_1657 - drug resistance transporter, Bcr/CflA subfamily, at 1,673,193 to 1,674,392
_1657
EX28DRAFT_1658: EX28DRAFT_1658 - Cyclopropane fatty acid synthase and related methyltransferases, at 1,674,690 to 1,675,838
_1658
EX28DRAFT_1659: EX28DRAFT_1659 - riboflavin synthase alpha chain (EC 2.5.1.9), at 1,675,869 to 1,676,513
_1659
EX28DRAFT_1660: EX28DRAFT_1660 - putative efflux protein, MATE family, at 1,676,751 to 1,678,112
_1660
Position (kb)
1674
1675
1676 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1673.707 kb on + strand, within EX28DRAFT_1657 at 1673.829 kb on + strand, within EX28DRAFT_1657 at 1673.830 kb on - strand, within EX28DRAFT_1657 at 1673.926 kb on - strand, within EX28DRAFT_1657 at 1674.028 kb on - strand, within EX28DRAFT_1657 at 1674.469 kb on + strand at 1674.469 kb on + strand at 1674.469 kb on + strand at 1674.470 kb on - strand at 1674.475 kb on - strand at 1674.493 kb on + strand at 1674.494 kb on - strand at 1674.502 kb on + strand at 1674.506 kb on - strand at 1674.506 kb on - strand at 1674.645 kb on + strand at 1674.656 kb on - strand at 1674.673 kb on - strand at 1674.673 kb on - strand at 1674.689 kb on + strand at 1674.706 kb on + strand at 1674.706 kb on + strand at 1674.706 kb on + strand at 1674.761 kb on - strand at 1674.780 kb on - strand at 1674.856 kb on + strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.857 kb on - strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.873 kb on + strand, within EX28DRAFT_1658 at 1674.874 kb on - strand, within EX28DRAFT_1658 at 1674.874 kb on - strand, within EX28DRAFT_1658 at 1674.875 kb on + strand, within EX28DRAFT_1658 at 1675.013 kb on + strand, within EX28DRAFT_1658 at 1675.033 kb on + strand, within EX28DRAFT_1658 at 1675.034 kb on - strand, within EX28DRAFT_1658 at 1675.048 kb on - strand, within EX28DRAFT_1658 at 1675.098 kb on + strand, within EX28DRAFT_1658 at 1675.098 kb on + strand, within EX28DRAFT_1658 at 1675.166 kb on + strand, within EX28DRAFT_1658 at 1675.177 kb on + strand, within EX28DRAFT_1658 at 1675.178 kb on - strand, within EX28DRAFT_1658 at 1675.236 kb on + strand, within EX28DRAFT_1658 at 1675.255 kb on - strand, within EX28DRAFT_1658 at 1675.425 kb on + strand, within EX28DRAFT_1658 at 1675.434 kb on + strand, within EX28DRAFT_1658 at 1675.434 kb on + strand, within EX28DRAFT_1658 at 1675.539 kb on + strand, within EX28DRAFT_1658 at 1675.539 kb on + strand, within EX28DRAFT_1658 at 1675.540 kb on - strand, within EX28DRAFT_1658 at 1675.704 kb on + strand, within EX28DRAFT_1658 at 1675.704 kb on + strand, within EX28DRAFT_1658 at 1675.730 kb on + strand at 1675.730 kb on + strand at 1675.730 kb on + strand at 1675.731 kb on - strand at 1675.731 kb on - strand at 1675.734 kb on + strand at 1675.734 kb on + strand at 1675.735 kb on - strand at 1675.735 kb on - strand at 1675.735 kb on - strand at 1675.795 kb on + strand at 1675.796 kb on - strand at 1675.822 kb on + strand at 1675.863 kb on + strand at 1675.896 kb on + strand at 1676.628 kb on + strand at 1676.628 kb on + strand at 1676.629 kb on - strand at 1676.629 kb on - strand at 1676.629 kb on - strand at 1676.629 kb on - strand at 1676.632 kb on + strand at 1676.647 kb on - strand at 1676.647 kb on - strand at 1676.651 kb on + strand at 1676.652 kb on - strand at 1676.716 kb on - strand at 1676.726 kb on + strand at 1676.727 kb on - strand at 1676.770 kb on + strand at 1676.771 kb on - strand at 1676.783 kb on + strand at 1676.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,673,707 + EX28DRAFT_1657 0.43 +0.1 1,673,829 + EX28DRAFT_1657 0.53 -0.5 1,673,830 - EX28DRAFT_1657 0.53 +0.2 1,673,926 - EX28DRAFT_1657 0.61 -0.4 1,674,028 - EX28DRAFT_1657 0.70 +0.4 1,674,469 + -0.3 1,674,469 + -0.2 1,674,469 + +1.4 1,674,470 - -0.4 1,674,475 - -0.3 1,674,493 + -0.1 1,674,494 - -2.0 1,674,502 + -0.0 1,674,506 - +0.2 1,674,506 - -0.0 1,674,645 + +0.1 1,674,656 - +0.5 1,674,673 - -0.4 1,674,673 - -1.7 1,674,689 + -1.2 1,674,706 + -0.7 1,674,706 + +0.9 1,674,706 + +0.4 1,674,761 - -1.0 1,674,780 - +0.0 1,674,856 + EX28DRAFT_1658 0.14 -0.4 1,674,857 - EX28DRAFT_1658 0.15 +1.6 1,674,857 - EX28DRAFT_1658 0.15 -4.4 1,674,857 - EX28DRAFT_1658 0.15 +0.1 1,674,857 - EX28DRAFT_1658 0.15 -0.6 1,674,873 + EX28DRAFT_1658 0.16 +0.3 1,674,873 + EX28DRAFT_1658 0.16 +0.2 1,674,873 + EX28DRAFT_1658 0.16 -1.0 1,674,874 - EX28DRAFT_1658 0.16 -1.2 1,674,874 - EX28DRAFT_1658 0.16 +0.7 1,674,875 + EX28DRAFT_1658 0.16 -0.1 1,675,013 + EX28DRAFT_1658 0.28 -1.3 1,675,033 + EX28DRAFT_1658 0.30 -1.8 1,675,034 - EX28DRAFT_1658 0.30 -0.3 1,675,048 - EX28DRAFT_1658 0.31 +2.4 1,675,098 + EX28DRAFT_1658 0.36 +1.0 1,675,098 + EX28DRAFT_1658 0.36 -2.4 1,675,166 + EX28DRAFT_1658 0.41 +1.9 1,675,177 + EX28DRAFT_1658 0.42 +0.1 1,675,178 - EX28DRAFT_1658 0.42 -0.1 1,675,236 + EX28DRAFT_1658 0.48 -0.4 1,675,255 - EX28DRAFT_1658 0.49 -0.1 1,675,425 + EX28DRAFT_1658 0.64 +0.1 1,675,434 + EX28DRAFT_1658 0.65 -1.2 1,675,434 + EX28DRAFT_1658 0.65 -0.9 1,675,539 + EX28DRAFT_1658 0.74 -0.2 1,675,539 + EX28DRAFT_1658 0.74 +0.5 1,675,540 - EX28DRAFT_1658 0.74 +0.3 1,675,704 + EX28DRAFT_1658 0.88 -1.0 1,675,704 + EX28DRAFT_1658 0.88 -0.5 1,675,730 + -2.7 1,675,730 + +0.2 1,675,730 + +0.4 1,675,731 - +0.2 1,675,731 - +1.7 1,675,734 + +0.0 1,675,734 + -0.7 1,675,735 - +0.1 1,675,735 - +0.8 1,675,735 - +2.9 1,675,795 + +0.6 1,675,796 - -1.7 1,675,822 + +0.6 1,675,863 + +1.0 1,675,896 + -0.5 1,676,628 + -2.0 1,676,628 + +0.6 1,676,629 - -1.5 1,676,629 - +0.2 1,676,629 - -0.5 1,676,629 - +0.1 1,676,632 + +0.3 1,676,647 - -0.2 1,676,647 - -0.1 1,676,651 + +0.6 1,676,652 - +0.0 1,676,716 - +0.0 1,676,726 + -0.5 1,676,727 - -0.4 1,676,770 + +1.9 1,676,771 - -0.4 1,676,783 + +0.6 1,676,784 - +0.1
Or see this region's nucleotide sequence