Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1635

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1633 and EX28DRAFT_1634 are separated by 125 nucleotidesEX28DRAFT_1634 and EX28DRAFT_1635 are separated by 42 nucleotidesEX28DRAFT_1635 and EX28DRAFT_1636 are separated by 93 nucleotides EX28DRAFT_1633: EX28DRAFT_1633 - tyrosyl-tRNA synthetase (EC 6.1.1.1), at 1,650,843 to 1,652,117 _1633 EX28DRAFT_1634: EX28DRAFT_1634 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,652,243 to 1,652,914 _1634 EX28DRAFT_1635: EX28DRAFT_1635 - Predicted periplasmic protein, at 1,652,957 to 1,653,280 _1635 EX28DRAFT_1636: EX28DRAFT_1636 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 1,653,374 to 1,654,498 _1636 Position (kb) 1652 1653 1654Strain fitness (log2 ratio) -2 -1 0 1at 1652.132 kb on - strandat 1652.132 kb on - strandat 1652.188 kb on - strandat 1652.188 kb on - strandat 1652.244 kb on + strandat 1652.244 kb on + strandat 1653.012 kb on + strand, within EX28DRAFT_1635at 1653.048 kb on + strand, within EX28DRAFT_1635at 1653.048 kb on + strand, within EX28DRAFT_1635at 1653.048 kb on + strand, within EX28DRAFT_1635at 1653.061 kb on + strand, within EX28DRAFT_1635at 1653.062 kb on - strand, within EX28DRAFT_1635at 1653.118 kb on - strand, within EX28DRAFT_1635at 1653.183 kb on + strand, within EX28DRAFT_1635at 1653.223 kb on + strand, within EX28DRAFT_1635at 1653.224 kb on - strand, within EX28DRAFT_1635at 1653.225 kb on + strand, within EX28DRAFT_1635at 1653.226 kb on - strand, within EX28DRAFT_1635at 1653.346 kb on - strandat 1653.386 kb on - strandat 1653.816 kb on - strand, within EX28DRAFT_1636at 1653.816 kb on - strand, within EX28DRAFT_1636at 1653.880 kb on - strand, within EX28DRAFT_1636at 1653.880 kb on - strand, within EX28DRAFT_1636at 1653.923 kb on - strand, within EX28DRAFT_1636at 1654.109 kb on + strand, within EX28DRAFT_1636at 1654.112 kb on + strand, within EX28DRAFT_1636

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,652,132 - -1.4
1,652,132 - +0.1
1,652,188 - +0.5
1,652,188 - -0.9
1,652,244 + +0.0
1,652,244 + +0.2
1,653,012 + EX28DRAFT_1635 0.17 -2.0
1,653,048 + EX28DRAFT_1635 0.28 -0.4
1,653,048 + EX28DRAFT_1635 0.28 +1.3
1,653,048 + EX28DRAFT_1635 0.28 -0.2
1,653,061 + EX28DRAFT_1635 0.32 -0.2
1,653,062 - EX28DRAFT_1635 0.32 -0.9
1,653,118 - EX28DRAFT_1635 0.50 +0.1
1,653,183 + EX28DRAFT_1635 0.70 -0.8
1,653,223 + EX28DRAFT_1635 0.82 -0.3
1,653,224 - EX28DRAFT_1635 0.82 +0.1
1,653,225 + EX28DRAFT_1635 0.83 +1.3
1,653,226 - EX28DRAFT_1635 0.83 -0.0
1,653,346 - +0.1
1,653,386 - +0.4
1,653,816 - EX28DRAFT_1636 0.39 -0.2
1,653,816 - EX28DRAFT_1636 0.39 +1.1
1,653,880 - EX28DRAFT_1636 0.45 -0.3
1,653,880 - EX28DRAFT_1636 0.45 +0.4
1,653,923 - EX28DRAFT_1636 0.49 +0.1
1,654,109 + EX28DRAFT_1636 0.65 +1.2
1,654,112 + EX28DRAFT_1636 0.66 -0.0

Or see this region's nucleotide sequence