Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1633 and EX28DRAFT_1634 are separated by 125 nucleotides EX28DRAFT_1634 and EX28DRAFT_1635 are separated by 42 nucleotides EX28DRAFT_1635 and EX28DRAFT_1636 are separated by 93 nucleotides
EX28DRAFT_1633: EX28DRAFT_1633 - tyrosyl-tRNA synthetase (EC 6.1.1.1), at 1,650,843 to 1,652,117
_1633
EX28DRAFT_1634: EX28DRAFT_1634 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,652,243 to 1,652,914
_1634
EX28DRAFT_1635: EX28DRAFT_1635 - Predicted periplasmic protein, at 1,652,957 to 1,653,280
_1635
EX28DRAFT_1636: EX28DRAFT_1636 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 1,653,374 to 1,654,498
_1636
Position (kb)
1652
1653
1654 Strain fitness (log2 ratio)
-2
-1
0
1 at 1652.132 kb on - strand at 1652.132 kb on - strand at 1652.188 kb on - strand at 1652.188 kb on - strand at 1652.244 kb on + strand at 1652.244 kb on + strand at 1653.012 kb on + strand, within EX28DRAFT_1635 at 1653.048 kb on + strand, within EX28DRAFT_1635 at 1653.048 kb on + strand, within EX28DRAFT_1635 at 1653.048 kb on + strand, within EX28DRAFT_1635 at 1653.061 kb on + strand, within EX28DRAFT_1635 at 1653.062 kb on - strand, within EX28DRAFT_1635 at 1653.118 kb on - strand, within EX28DRAFT_1635 at 1653.183 kb on + strand, within EX28DRAFT_1635 at 1653.223 kb on + strand, within EX28DRAFT_1635 at 1653.224 kb on - strand, within EX28DRAFT_1635 at 1653.225 kb on + strand, within EX28DRAFT_1635 at 1653.226 kb on - strand, within EX28DRAFT_1635 at 1653.346 kb on - strand at 1653.386 kb on - strand at 1653.816 kb on - strand, within EX28DRAFT_1636 at 1653.816 kb on - strand, within EX28DRAFT_1636 at 1653.880 kb on - strand, within EX28DRAFT_1636 at 1653.880 kb on - strand, within EX28DRAFT_1636 at 1653.923 kb on - strand, within EX28DRAFT_1636 at 1654.109 kb on + strand, within EX28DRAFT_1636 at 1654.112 kb on + strand, within EX28DRAFT_1636
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,652,132 - -1.4 1,652,132 - +0.1 1,652,188 - +0.5 1,652,188 - -0.9 1,652,244 + +0.0 1,652,244 + +0.2 1,653,012 + EX28DRAFT_1635 0.17 -2.0 1,653,048 + EX28DRAFT_1635 0.28 -0.4 1,653,048 + EX28DRAFT_1635 0.28 +1.3 1,653,048 + EX28DRAFT_1635 0.28 -0.2 1,653,061 + EX28DRAFT_1635 0.32 -0.2 1,653,062 - EX28DRAFT_1635 0.32 -0.9 1,653,118 - EX28DRAFT_1635 0.50 +0.1 1,653,183 + EX28DRAFT_1635 0.70 -0.8 1,653,223 + EX28DRAFT_1635 0.82 -0.3 1,653,224 - EX28DRAFT_1635 0.82 +0.1 1,653,225 + EX28DRAFT_1635 0.83 +1.3 1,653,226 - EX28DRAFT_1635 0.83 -0.0 1,653,346 - +0.1 1,653,386 - +0.4 1,653,816 - EX28DRAFT_1636 0.39 -0.2 1,653,816 - EX28DRAFT_1636 0.39 +1.1 1,653,880 - EX28DRAFT_1636 0.45 -0.3 1,653,880 - EX28DRAFT_1636 0.45 +0.4 1,653,923 - EX28DRAFT_1636 0.49 +0.1 1,654,109 + EX28DRAFT_1636 0.65 +1.2 1,654,112 + EX28DRAFT_1636 0.66 -0.0
Or see this region's nucleotide sequence