Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1614

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1613 and EX28DRAFT_1614 are separated by 106 nucleotidesEX28DRAFT_1614 and EX28DRAFT_1615 are separated by 2 nucleotides EX28DRAFT_1613: EX28DRAFT_1613 - Zn-dependent hydrolases, including glyoxylases, at 1,631,141 to 1,632,121 _1613 EX28DRAFT_1614: EX28DRAFT_1614 - Transcriptional regulator, at 1,632,228 to 1,633,124 _1614 EX28DRAFT_1615: EX28DRAFT_1615 - transcriptional regulator, LacI family, at 1,633,127 to 1,634,155 _1615 Position (kb) 1632 1633 1634Strain fitness (log2 ratio) -3 -2 -1 0 1at 1631.228 kb on - strandat 1631.347 kb on + strand, within EX28DRAFT_1613at 1631.348 kb on - strand, within EX28DRAFT_1613at 1631.470 kb on - strand, within EX28DRAFT_1613at 1631.518 kb on + strand, within EX28DRAFT_1613at 1631.519 kb on - strand, within EX28DRAFT_1613at 1631.537 kb on - strand, within EX28DRAFT_1613at 1631.642 kb on + strand, within EX28DRAFT_1613at 1631.647 kb on - strand, within EX28DRAFT_1613at 1631.647 kb on - strand, within EX28DRAFT_1613at 1631.945 kb on + strand, within EX28DRAFT_1613at 1631.945 kb on + strand, within EX28DRAFT_1613at 1631.946 kb on - strand, within EX28DRAFT_1613at 1631.970 kb on + strand, within EX28DRAFT_1613at 1631.971 kb on - strand, within EX28DRAFT_1613at 1632.018 kb on + strand, within EX28DRAFT_1613at 1632.018 kb on + strand, within EX28DRAFT_1613at 1632.021 kb on + strand, within EX28DRAFT_1613at 1632.022 kb on - strand, within EX28DRAFT_1613at 1632.180 kb on + strandat 1632.181 kb on - strandat 1632.189 kb on + strandat 1632.335 kb on + strand, within EX28DRAFT_1614at 1632.336 kb on - strand, within EX28DRAFT_1614at 1632.450 kb on - strand, within EX28DRAFT_1614at 1632.640 kb on + strand, within EX28DRAFT_1614at 1632.641 kb on - strand, within EX28DRAFT_1614at 1632.736 kb on - strand, within EX28DRAFT_1614at 1632.736 kb on - strand, within EX28DRAFT_1614at 1632.943 kb on - strand, within EX28DRAFT_1614at 1632.946 kb on + strand, within EX28DRAFT_1614at 1632.946 kb on + strand, within EX28DRAFT_1614at 1632.946 kb on + strand, within EX28DRAFT_1614at 1632.947 kb on - strand, within EX28DRAFT_1614at 1632.968 kb on + strand, within EX28DRAFT_1614at 1633.061 kb on - strandat 1633.126 kb on - strandat 1633.128 kb on + strandat 1633.129 kb on - strandat 1633.221 kb on + strandat 1633.262 kb on + strand, within EX28DRAFT_1615at 1633.405 kb on + strand, within EX28DRAFT_1615at 1633.407 kb on + strand, within EX28DRAFT_1615at 1633.529 kb on - strand, within EX28DRAFT_1615at 1633.603 kb on + strand, within EX28DRAFT_1615at 1633.604 kb on - strand, within EX28DRAFT_1615at 1633.624 kb on + strand, within EX28DRAFT_1615at 1633.625 kb on - strand, within EX28DRAFT_1615at 1633.693 kb on - strand, within EX28DRAFT_1615at 1633.693 kb on - strand, within EX28DRAFT_1615at 1633.693 kb on - strand, within EX28DRAFT_1615at 1633.920 kb on + strand, within EX28DRAFT_1615at 1633.947 kb on - strand, within EX28DRAFT_1615at 1633.947 kb on - strand, within EX28DRAFT_1615

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,631,228 - +1.7
1,631,347 + EX28DRAFT_1613 0.21 +0.4
1,631,348 - EX28DRAFT_1613 0.21 +0.3
1,631,470 - EX28DRAFT_1613 0.34 -1.7
1,631,518 + EX28DRAFT_1613 0.38 +0.8
1,631,519 - EX28DRAFT_1613 0.39 -0.3
1,631,537 - EX28DRAFT_1613 0.40 -0.1
1,631,642 + EX28DRAFT_1613 0.51 +0.6
1,631,647 - EX28DRAFT_1613 0.52 -0.9
1,631,647 - EX28DRAFT_1613 0.52 -0.2
1,631,945 + EX28DRAFT_1613 0.82 -0.4
1,631,945 + EX28DRAFT_1613 0.82 -0.0
1,631,946 - EX28DRAFT_1613 0.82 -0.4
1,631,970 + EX28DRAFT_1613 0.85 +0.3
1,631,971 - EX28DRAFT_1613 0.85 -1.3
1,632,018 + EX28DRAFT_1613 0.89 -1.1
1,632,018 + EX28DRAFT_1613 0.89 -1.5
1,632,021 + EX28DRAFT_1613 0.90 +0.3
1,632,022 - EX28DRAFT_1613 0.90 -0.1
1,632,180 + -2.8
1,632,181 - -0.4
1,632,189 + +0.3
1,632,335 + EX28DRAFT_1614 0.12 -0.3
1,632,336 - EX28DRAFT_1614 0.12 +0.1
1,632,450 - EX28DRAFT_1614 0.25 -0.9
1,632,640 + EX28DRAFT_1614 0.46 +1.0
1,632,641 - EX28DRAFT_1614 0.46 +0.8
1,632,736 - EX28DRAFT_1614 0.57 +0.6
1,632,736 - EX28DRAFT_1614 0.57 +0.4
1,632,943 - EX28DRAFT_1614 0.80 +0.0
1,632,946 + EX28DRAFT_1614 0.80 +0.5
1,632,946 + EX28DRAFT_1614 0.80 -0.3
1,632,946 + EX28DRAFT_1614 0.80 +0.1
1,632,947 - EX28DRAFT_1614 0.80 +0.5
1,632,968 + EX28DRAFT_1614 0.82 +0.1
1,633,061 - +1.5
1,633,126 - +0.5
1,633,128 + -0.8
1,633,129 - +0.9
1,633,221 + +0.2
1,633,262 + EX28DRAFT_1615 0.13 -0.4
1,633,405 + EX28DRAFT_1615 0.27 -0.2
1,633,407 + EX28DRAFT_1615 0.27 +1.4
1,633,529 - EX28DRAFT_1615 0.39 +1.2
1,633,603 + EX28DRAFT_1615 0.46 -0.4
1,633,604 - EX28DRAFT_1615 0.46 +0.0
1,633,624 + EX28DRAFT_1615 0.48 +1.3
1,633,625 - EX28DRAFT_1615 0.48 -0.3
1,633,693 - EX28DRAFT_1615 0.55 -2.7
1,633,693 - EX28DRAFT_1615 0.55 +0.3
1,633,693 - EX28DRAFT_1615 0.55 -0.0
1,633,920 + EX28DRAFT_1615 0.77 +0.2
1,633,947 - EX28DRAFT_1615 0.80 +1.0
1,633,947 - EX28DRAFT_1615 0.80 +0.5

Or see this region's nucleotide sequence