Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1613 and EX28DRAFT_1614 are separated by 106 nucleotides EX28DRAFT_1614 and EX28DRAFT_1615 are separated by 2 nucleotides
EX28DRAFT_1613: EX28DRAFT_1613 - Zn-dependent hydrolases, including glyoxylases, at 1,631,141 to 1,632,121
_1613
EX28DRAFT_1614: EX28DRAFT_1614 - Transcriptional regulator, at 1,632,228 to 1,633,124
_1614
EX28DRAFT_1615: EX28DRAFT_1615 - transcriptional regulator, LacI family, at 1,633,127 to 1,634,155
_1615
Position (kb)
1632
1633
1634 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1631.228 kb on - strand at 1631.347 kb on + strand, within EX28DRAFT_1613 at 1631.348 kb on - strand, within EX28DRAFT_1613 at 1631.470 kb on - strand, within EX28DRAFT_1613 at 1631.518 kb on + strand, within EX28DRAFT_1613 at 1631.519 kb on - strand, within EX28DRAFT_1613 at 1631.537 kb on - strand, within EX28DRAFT_1613 at 1631.642 kb on + strand, within EX28DRAFT_1613 at 1631.647 kb on - strand, within EX28DRAFT_1613 at 1631.647 kb on - strand, within EX28DRAFT_1613 at 1631.945 kb on + strand, within EX28DRAFT_1613 at 1631.945 kb on + strand, within EX28DRAFT_1613 at 1631.946 kb on - strand, within EX28DRAFT_1613 at 1631.970 kb on + strand, within EX28DRAFT_1613 at 1631.971 kb on - strand, within EX28DRAFT_1613 at 1632.018 kb on + strand, within EX28DRAFT_1613 at 1632.018 kb on + strand, within EX28DRAFT_1613 at 1632.021 kb on + strand, within EX28DRAFT_1613 at 1632.022 kb on - strand, within EX28DRAFT_1613 at 1632.180 kb on + strand at 1632.181 kb on - strand at 1632.189 kb on + strand at 1632.335 kb on + strand, within EX28DRAFT_1614 at 1632.336 kb on - strand, within EX28DRAFT_1614 at 1632.450 kb on - strand, within EX28DRAFT_1614 at 1632.640 kb on + strand, within EX28DRAFT_1614 at 1632.641 kb on - strand, within EX28DRAFT_1614 at 1632.736 kb on - strand, within EX28DRAFT_1614 at 1632.736 kb on - strand, within EX28DRAFT_1614 at 1632.943 kb on - strand, within EX28DRAFT_1614 at 1632.946 kb on + strand, within EX28DRAFT_1614 at 1632.946 kb on + strand, within EX28DRAFT_1614 at 1632.946 kb on + strand, within EX28DRAFT_1614 at 1632.947 kb on - strand, within EX28DRAFT_1614 at 1632.968 kb on + strand, within EX28DRAFT_1614 at 1633.061 kb on - strand at 1633.126 kb on - strand at 1633.128 kb on + strand at 1633.129 kb on - strand at 1633.221 kb on + strand at 1633.262 kb on + strand, within EX28DRAFT_1615 at 1633.405 kb on + strand, within EX28DRAFT_1615 at 1633.407 kb on + strand, within EX28DRAFT_1615 at 1633.529 kb on - strand, within EX28DRAFT_1615 at 1633.603 kb on + strand, within EX28DRAFT_1615 at 1633.604 kb on - strand, within EX28DRAFT_1615 at 1633.624 kb on + strand, within EX28DRAFT_1615 at 1633.625 kb on - strand, within EX28DRAFT_1615 at 1633.693 kb on - strand, within EX28DRAFT_1615 at 1633.693 kb on - strand, within EX28DRAFT_1615 at 1633.693 kb on - strand, within EX28DRAFT_1615 at 1633.920 kb on + strand, within EX28DRAFT_1615 at 1633.947 kb on - strand, within EX28DRAFT_1615 at 1633.947 kb on - strand, within EX28DRAFT_1615
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,631,228 - +1.7 1,631,347 + EX28DRAFT_1613 0.21 +0.4 1,631,348 - EX28DRAFT_1613 0.21 +0.3 1,631,470 - EX28DRAFT_1613 0.34 -1.7 1,631,518 + EX28DRAFT_1613 0.38 +0.8 1,631,519 - EX28DRAFT_1613 0.39 -0.3 1,631,537 - EX28DRAFT_1613 0.40 -0.1 1,631,642 + EX28DRAFT_1613 0.51 +0.6 1,631,647 - EX28DRAFT_1613 0.52 -0.9 1,631,647 - EX28DRAFT_1613 0.52 -0.2 1,631,945 + EX28DRAFT_1613 0.82 -0.4 1,631,945 + EX28DRAFT_1613 0.82 -0.0 1,631,946 - EX28DRAFT_1613 0.82 -0.4 1,631,970 + EX28DRAFT_1613 0.85 +0.3 1,631,971 - EX28DRAFT_1613 0.85 -1.3 1,632,018 + EX28DRAFT_1613 0.89 -1.1 1,632,018 + EX28DRAFT_1613 0.89 -1.5 1,632,021 + EX28DRAFT_1613 0.90 +0.3 1,632,022 - EX28DRAFT_1613 0.90 -0.1 1,632,180 + -2.8 1,632,181 - -0.4 1,632,189 + +0.3 1,632,335 + EX28DRAFT_1614 0.12 -0.3 1,632,336 - EX28DRAFT_1614 0.12 +0.1 1,632,450 - EX28DRAFT_1614 0.25 -0.9 1,632,640 + EX28DRAFT_1614 0.46 +1.0 1,632,641 - EX28DRAFT_1614 0.46 +0.8 1,632,736 - EX28DRAFT_1614 0.57 +0.6 1,632,736 - EX28DRAFT_1614 0.57 +0.4 1,632,943 - EX28DRAFT_1614 0.80 +0.0 1,632,946 + EX28DRAFT_1614 0.80 +0.5 1,632,946 + EX28DRAFT_1614 0.80 -0.3 1,632,946 + EX28DRAFT_1614 0.80 +0.1 1,632,947 - EX28DRAFT_1614 0.80 +0.5 1,632,968 + EX28DRAFT_1614 0.82 +0.1 1,633,061 - +1.5 1,633,126 - +0.5 1,633,128 + -0.8 1,633,129 - +0.9 1,633,221 + +0.2 1,633,262 + EX28DRAFT_1615 0.13 -0.4 1,633,405 + EX28DRAFT_1615 0.27 -0.2 1,633,407 + EX28DRAFT_1615 0.27 +1.4 1,633,529 - EX28DRAFT_1615 0.39 +1.2 1,633,603 + EX28DRAFT_1615 0.46 -0.4 1,633,604 - EX28DRAFT_1615 0.46 +0.0 1,633,624 + EX28DRAFT_1615 0.48 +1.3 1,633,625 - EX28DRAFT_1615 0.48 -0.3 1,633,693 - EX28DRAFT_1615 0.55 -2.7 1,633,693 - EX28DRAFT_1615 0.55 +0.3 1,633,693 - EX28DRAFT_1615 0.55 -0.0 1,633,920 + EX28DRAFT_1615 0.77 +0.2 1,633,947 - EX28DRAFT_1615 0.80 +1.0 1,633,947 - EX28DRAFT_1615 0.80 +0.5
Or see this region's nucleotide sequence