Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1599

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1598 and EX28DRAFT_1599 are separated by 452 nucleotidesEX28DRAFT_1599 and EX28DRAFT_1600 are separated by 209 nucleotidesEX28DRAFT_1600 and EX28DRAFT_1601 are separated by 182 nucleotides EX28DRAFT_1598: EX28DRAFT_1598 - P63C domain, at 1,613,416 to 1,614,402 _1598 EX28DRAFT_1599: EX28DRAFT_1599 - hypothetical protein, at 1,614,855 to 1,615,046 _1599 EX28DRAFT_1600: EX28DRAFT_1600 - Protein of unknown function (DUF1482), at 1,615,256 to 1,615,432 _1600 EX28DRAFT_1601: EX28DRAFT_1601 - Enterobacterial exodeoxyribonuclease VIII, at 1,615,615 to 1,618,776 _1601 Position (kb) 1614 1615 1616Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1613.918 kb on + strand, within EX28DRAFT_1598at 1613.949 kb on + strand, within EX28DRAFT_1598at 1614.045 kb on - strand, within EX28DRAFT_1598at 1614.060 kb on + strand, within EX28DRAFT_1598at 1614.066 kb on + strand, within EX28DRAFT_1598at 1614.077 kb on - strand, within EX28DRAFT_1598at 1614.089 kb on + strand, within EX28DRAFT_1598at 1614.142 kb on + strand, within EX28DRAFT_1598at 1614.207 kb on + strand, within EX28DRAFT_1598at 1614.212 kb on + strand, within EX28DRAFT_1598at 1614.212 kb on + strand, within EX28DRAFT_1598at 1614.212 kb on + strand, within EX28DRAFT_1598at 1614.212 kb on + strand, within EX28DRAFT_1598at 1614.223 kb on - strand, within EX28DRAFT_1598at 1614.285 kb on + strand, within EX28DRAFT_1598at 1614.400 kb on + strandat 1614.431 kb on + strandat 1614.468 kb on + strandat 1614.469 kb on - strandat 1614.472 kb on + strandat 1614.526 kb on + strandat 1614.672 kb on - strandat 1614.716 kb on - strandat 1614.737 kb on + strandat 1614.748 kb on - strandat 1614.748 kb on - strandat 1614.748 kb on - strandat 1614.749 kb on + strandat 1614.749 kb on + strandat 1614.750 kb on - strandat 1614.779 kb on + strandat 1614.796 kb on + strandat 1614.829 kb on - strandat 1614.848 kb on + strandat 1614.848 kb on + strandat 1614.848 kb on + strandat 1614.848 kb on + strandat 1614.848 kb on + strandat 1614.848 kb on + strandat 1614.848 kb on + strandat 1614.848 kb on + strandat 1614.849 kb on - strandat 1614.849 kb on - strandat 1614.849 kb on - strandat 1614.849 kb on - strandat 1614.850 kb on + strandat 1614.851 kb on - strandat 1614.851 kb on - strandat 1614.851 kb on - strandat 1614.851 kb on - strandat 1614.851 kb on - strandat 1614.856 kb on + strandat 1614.986 kb on - strand, within EX28DRAFT_1599at 1614.993 kb on - strand, within EX28DRAFT_1599at 1614.993 kb on - strand, within EX28DRAFT_1599at 1614.993 kb on - strand, within EX28DRAFT_1599at 1614.994 kb on + strand, within EX28DRAFT_1599at 1614.994 kb on + strand, within EX28DRAFT_1599at 1614.994 kb on + strand, within EX28DRAFT_1599at 1614.995 kb on - strand, within EX28DRAFT_1599at 1614.995 kb on - strand, within EX28DRAFT_1599at 1614.995 kb on - strand, within EX28DRAFT_1599at 1614.995 kb on - strand, within EX28DRAFT_1599at 1615.022 kb on - strand, within EX28DRAFT_1599at 1615.051 kb on - strandat 1615.062 kb on + strandat 1615.063 kb on - strandat 1615.108 kb on - strandat 1615.131 kb on - strandat 1615.131 kb on - strandat 1615.134 kb on + strandat 1615.218 kb on + strandat 1615.250 kb on - strandat 1615.250 kb on - strandat 1615.250 kb on - strandat 1615.330 kb on - strand, within EX28DRAFT_1600at 1615.331 kb on + strand, within EX28DRAFT_1600at 1615.331 kb on + strand, within EX28DRAFT_1600at 1615.397 kb on + strand, within EX28DRAFT_1600at 1615.398 kb on - strand, within EX28DRAFT_1600at 1615.461 kb on + strandat 1615.472 kb on - strandat 1615.592 kb on - strandat 1615.592 kb on - strandat 1615.592 kb on - strandat 1615.592 kb on - strandat 1615.592 kb on - strandat 1615.604 kb on - strandat 1615.740 kb on + strandat 1615.741 kb on - strandat 1615.766 kb on - strandat 1616.029 kb on + strand, within EX28DRAFT_1601at 1616.030 kb on - strand, within EX28DRAFT_1601at 1616.030 kb on - strand, within EX28DRAFT_1601at 1616.038 kb on + strand, within EX28DRAFT_1601at 1616.038 kb on + strand, within EX28DRAFT_1601at 1616.038 kb on + strand, within EX28DRAFT_1601at 1616.038 kb on + strand, within EX28DRAFT_1601at 1616.038 kb on + strand, within EX28DRAFT_1601at 1616.038 kb on + strand, within EX28DRAFT_1601at 1616.038 kb on + strand, within EX28DRAFT_1601at 1616.039 kb on - strand, within EX28DRAFT_1601at 1616.039 kb on - strand, within EX28DRAFT_1601at 1616.039 kb on - strand, within EX28DRAFT_1601at 1616.039 kb on - strand, within EX28DRAFT_1601at 1616.039 kb on - strand, within EX28DRAFT_1601at 1616.039 kb on - strand, within EX28DRAFT_1601at 1616.039 kb on - strand, within EX28DRAFT_1601at 1616.039 kb on - strand, within EX28DRAFT_1601

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,613,918 + EX28DRAFT_1598 0.51 +1.4
1,613,949 + EX28DRAFT_1598 0.54 -1.9
1,614,045 - EX28DRAFT_1598 0.64 -0.0
1,614,060 + EX28DRAFT_1598 0.65 +1.7
1,614,066 + EX28DRAFT_1598 0.66 +0.2
1,614,077 - EX28DRAFT_1598 0.67 +2.4
1,614,089 + EX28DRAFT_1598 0.68 +0.2
1,614,142 + EX28DRAFT_1598 0.74 +0.1
1,614,207 + EX28DRAFT_1598 0.80 +0.9
1,614,212 + EX28DRAFT_1598 0.81 +0.2
1,614,212 + EX28DRAFT_1598 0.81 +0.6
1,614,212 + EX28DRAFT_1598 0.81 +0.4
1,614,212 + EX28DRAFT_1598 0.81 -1.4
1,614,223 - EX28DRAFT_1598 0.82 +0.4
1,614,285 + EX28DRAFT_1598 0.88 -0.3
1,614,400 + +0.5
1,614,431 + +0.2
1,614,468 + +0.7
1,614,469 - +0.3
1,614,472 + +0.1
1,614,526 + -0.2
1,614,672 - +0.6
1,614,716 - +0.4
1,614,737 + -0.2
1,614,748 - +0.0
1,614,748 - +1.5
1,614,748 - -1.6
1,614,749 + -1.4
1,614,749 + +0.5
1,614,750 - +0.3
1,614,779 + -2.0
1,614,796 + +0.1
1,614,829 - +0.4
1,614,848 + +0.0
1,614,848 + +0.0
1,614,848 + +0.1
1,614,848 + +0.2
1,614,848 + -0.2
1,614,848 + -1.0
1,614,848 + +0.2
1,614,848 + +0.6
1,614,849 - -0.2
1,614,849 - +0.7
1,614,849 - +0.4
1,614,849 - +0.1
1,614,850 + -0.4
1,614,851 - +0.8
1,614,851 - -0.1
1,614,851 - -0.2
1,614,851 - -0.2
1,614,851 - -0.0
1,614,856 + -0.4
1,614,986 - EX28DRAFT_1599 0.68 +0.3
1,614,993 - EX28DRAFT_1599 0.72 -0.1
1,614,993 - EX28DRAFT_1599 0.72 -0.8
1,614,993 - EX28DRAFT_1599 0.72 +0.1
1,614,994 + EX28DRAFT_1599 0.72 +1.0
1,614,994 + EX28DRAFT_1599 0.72 -0.4
1,614,994 + EX28DRAFT_1599 0.72 +0.8
1,614,995 - EX28DRAFT_1599 0.73 +1.2
1,614,995 - EX28DRAFT_1599 0.73 +0.1
1,614,995 - EX28DRAFT_1599 0.73 +0.3
1,614,995 - EX28DRAFT_1599 0.73 -0.3
1,615,022 - EX28DRAFT_1599 0.87 +0.7
1,615,051 - +0.2
1,615,062 + -0.2
1,615,063 - -0.2
1,615,108 - -0.0
1,615,131 - +0.4
1,615,131 - -0.1
1,615,134 + +0.4
1,615,218 + -1.2
1,615,250 - -3.6
1,615,250 - -0.7
1,615,250 - +0.9
1,615,330 - EX28DRAFT_1600 0.42 +0.0
1,615,331 + EX28DRAFT_1600 0.42 -0.4
1,615,331 + EX28DRAFT_1600 0.42 -0.2
1,615,397 + EX28DRAFT_1600 0.80 -1.4
1,615,398 - EX28DRAFT_1600 0.80 +1.0
1,615,461 + -1.1
1,615,472 - +2.9
1,615,592 - -0.7
1,615,592 - -0.4
1,615,592 - +0.6
1,615,592 - -0.3
1,615,592 - +0.2
1,615,604 - -0.2
1,615,740 + +2.6
1,615,741 - -1.2
1,615,766 - -0.1
1,616,029 + EX28DRAFT_1601 0.13 -0.4
1,616,030 - EX28DRAFT_1601 0.13 +0.7
1,616,030 - EX28DRAFT_1601 0.13 -0.8
1,616,038 + EX28DRAFT_1601 0.13 -0.8
1,616,038 + EX28DRAFT_1601 0.13 +0.0
1,616,038 + EX28DRAFT_1601 0.13 -0.0
1,616,038 + EX28DRAFT_1601 0.13 +1.7
1,616,038 + EX28DRAFT_1601 0.13 +0.7
1,616,038 + EX28DRAFT_1601 0.13 +0.3
1,616,038 + EX28DRAFT_1601 0.13 +0.1
1,616,039 - EX28DRAFT_1601 0.13 -0.1
1,616,039 - EX28DRAFT_1601 0.13 -0.4
1,616,039 - EX28DRAFT_1601 0.13 +0.5
1,616,039 - EX28DRAFT_1601 0.13 +1.9
1,616,039 - EX28DRAFT_1601 0.13 +0.2
1,616,039 - EX28DRAFT_1601 0.13 -0.4
1,616,039 - EX28DRAFT_1601 0.13 -0.7
1,616,039 - EX28DRAFT_1601 0.13 +1.5

Or see this region's nucleotide sequence