Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1593 and EX28DRAFT_1594 are separated by 119 nucleotides EX28DRAFT_1594 and EX28DRAFT_1595 overlap by 4 nucleotides EX28DRAFT_1595 and EX28DRAFT_1596 overlap by 4 nucleotides EX28DRAFT_1596 and EX28DRAFT_1597 are separated by 319 nucleotides
EX28DRAFT_1593: EX28DRAFT_1593 - hypothetical protein, at 1,609,964 to 1,610,182
_1593
EX28DRAFT_1594: EX28DRAFT_1594 - phage replication protein P, at 1,610,302 to 1,610,988
_1594
EX28DRAFT_1595: EX28DRAFT_1595 - phage replication protein O, at 1,610,985 to 1,611,990
_1595
EX28DRAFT_1596: EX28DRAFT_1596 - Protein of unknown function (DUF1019), at 1,611,987 to 1,612,538
_1596
EX28DRAFT_1597: EX28DRAFT_1597 - Helix-turn-helix, at 1,612,858 to 1,613,241
_1597
Position (kb)
1610
1611
1612 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1610.218 kb on - strand at 1610.227 kb on - strand at 1610.255 kb on - strand at 1610.267 kb on + strand at 1610.267 kb on + strand at 1610.272 kb on + strand at 1610.273 kb on - strand at 1610.273 kb on - strand at 1610.303 kb on + strand at 1610.333 kb on + strand at 1610.446 kb on - strand, within EX28DRAFT_1594 at 1610.527 kb on + strand, within EX28DRAFT_1594 at 1610.527 kb on + strand, within EX28DRAFT_1594 at 1610.527 kb on + strand, within EX28DRAFT_1594 at 1610.527 kb on + strand, within EX28DRAFT_1594 at 1610.528 kb on - strand, within EX28DRAFT_1594 at 1610.528 kb on - strand, within EX28DRAFT_1594 at 1610.528 kb on - strand, within EX28DRAFT_1594 at 1610.528 kb on - strand, within EX28DRAFT_1594 at 1610.528 kb on - strand, within EX28DRAFT_1594 at 1610.528 kb on - strand, within EX28DRAFT_1594 at 1610.528 kb on - strand, within EX28DRAFT_1594 at 1610.528 kb on - strand, within EX28DRAFT_1594 at 1610.529 kb on + strand, within EX28DRAFT_1594 at 1610.529 kb on + strand, within EX28DRAFT_1594 at 1610.529 kb on + strand, within EX28DRAFT_1594 at 1610.529 kb on + strand, within EX28DRAFT_1594 at 1610.529 kb on + strand, within EX28DRAFT_1594 at 1610.530 kb on - strand, within EX28DRAFT_1594 at 1610.530 kb on - strand, within EX28DRAFT_1594 at 1610.530 kb on - strand, within EX28DRAFT_1594 at 1611.018 kb on - strand at 1611.219 kb on - strand, within EX28DRAFT_1595 at 1611.219 kb on - strand, within EX28DRAFT_1595 at 1611.280 kb on + strand, within EX28DRAFT_1595 at 1611.327 kb on - strand, within EX28DRAFT_1595 at 1611.340 kb on + strand, within EX28DRAFT_1595 at 1611.340 kb on + strand, within EX28DRAFT_1595 at 1611.340 kb on + strand, within EX28DRAFT_1595 at 1611.341 kb on - strand, within EX28DRAFT_1595 at 1611.341 kb on - strand, within EX28DRAFT_1595 at 1611.342 kb on + strand, within EX28DRAFT_1595 at 1611.434 kb on + strand, within EX28DRAFT_1595 at 1611.435 kb on - strand, within EX28DRAFT_1595 at 1611.446 kb on + strand, within EX28DRAFT_1595 at 1611.447 kb on - strand, within EX28DRAFT_1595 at 1611.447 kb on - strand, within EX28DRAFT_1595 at 1611.447 kb on - strand, within EX28DRAFT_1595 at 1611.448 kb on + strand, within EX28DRAFT_1595 at 1611.448 kb on + strand, within EX28DRAFT_1595 at 1611.570 kb on + strand, within EX28DRAFT_1595 at 1611.571 kb on - strand, within EX28DRAFT_1595 at 1611.671 kb on + strand, within EX28DRAFT_1595 at 1611.672 kb on - strand, within EX28DRAFT_1595 at 1611.729 kb on - strand, within EX28DRAFT_1595 at 1611.818 kb on + strand, within EX28DRAFT_1595 at 1611.819 kb on - strand, within EX28DRAFT_1595 at 1611.819 kb on - strand, within EX28DRAFT_1595 at 1611.819 kb on - strand, within EX28DRAFT_1595 at 1611.842 kb on + strand, within EX28DRAFT_1595 at 1611.902 kb on + strand at 1611.903 kb on - strand at 1611.906 kb on + strand at 1611.906 kb on + strand at 1611.906 kb on + strand at 1611.906 kb on + strand at 1611.906 kb on + strand at 1611.907 kb on - strand at 1611.907 kb on - strand at 1611.979 kb on + strand at 1611.990 kb on + strand at 1611.990 kb on + strand at 1612.034 kb on + strand at 1612.215 kb on + strand, within EX28DRAFT_1596 at 1612.496 kb on + strand at 1612.511 kb on + strand at 1612.511 kb on + strand at 1612.538 kb on + strand at 1612.538 kb on + strand at 1612.542 kb on + strand at 1612.542 kb on + strand at 1612.759 kb on + strand at 1612.759 kb on + strand at 1612.759 kb on + strand at 1612.846 kb on + strand at 1612.846 kb on + strand at 1612.857 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,610,218 - -0.6 1,610,227 - -0.1 1,610,255 - +0.5 1,610,267 + -0.6 1,610,267 + +0.1 1,610,272 + -0.2 1,610,273 - -0.2 1,610,273 - +0.2 1,610,303 + +0.3 1,610,333 + -1.4 1,610,446 - EX28DRAFT_1594 0.21 -0.2 1,610,527 + EX28DRAFT_1594 0.33 -0.6 1,610,527 + EX28DRAFT_1594 0.33 -0.1 1,610,527 + EX28DRAFT_1594 0.33 +0.2 1,610,527 + EX28DRAFT_1594 0.33 -0.3 1,610,528 - EX28DRAFT_1594 0.33 -0.4 1,610,528 - EX28DRAFT_1594 0.33 +0.1 1,610,528 - EX28DRAFT_1594 0.33 -0.2 1,610,528 - EX28DRAFT_1594 0.33 +0.9 1,610,528 - EX28DRAFT_1594 0.33 -1.0 1,610,528 - EX28DRAFT_1594 0.33 +0.7 1,610,528 - EX28DRAFT_1594 0.33 -0.1 1,610,528 - EX28DRAFT_1594 0.33 +2.7 1,610,529 + EX28DRAFT_1594 0.33 -0.8 1,610,529 + EX28DRAFT_1594 0.33 +0.1 1,610,529 + EX28DRAFT_1594 0.33 -2.0 1,610,529 + EX28DRAFT_1594 0.33 -0.7 1,610,529 + EX28DRAFT_1594 0.33 -0.7 1,610,530 - EX28DRAFT_1594 0.33 -0.2 1,610,530 - EX28DRAFT_1594 0.33 +2.0 1,610,530 - EX28DRAFT_1594 0.33 -0.2 1,611,018 - -0.1 1,611,219 - EX28DRAFT_1595 0.23 -0.1 1,611,219 - EX28DRAFT_1595 0.23 +0.2 1,611,280 + EX28DRAFT_1595 0.29 -0.3 1,611,327 - EX28DRAFT_1595 0.34 -0.5 1,611,340 + EX28DRAFT_1595 0.35 -0.4 1,611,340 + EX28DRAFT_1595 0.35 +1.6 1,611,340 + EX28DRAFT_1595 0.35 -0.6 1,611,341 - EX28DRAFT_1595 0.35 -0.1 1,611,341 - EX28DRAFT_1595 0.35 +0.6 1,611,342 + EX28DRAFT_1595 0.35 +0.6 1,611,434 + EX28DRAFT_1595 0.45 +0.9 1,611,435 - EX28DRAFT_1595 0.45 +0.0 1,611,446 + EX28DRAFT_1595 0.46 +0.4 1,611,447 - EX28DRAFT_1595 0.46 +1.3 1,611,447 - EX28DRAFT_1595 0.46 +0.6 1,611,447 - EX28DRAFT_1595 0.46 +0.6 1,611,448 + EX28DRAFT_1595 0.46 -0.2 1,611,448 + EX28DRAFT_1595 0.46 -0.1 1,611,570 + EX28DRAFT_1595 0.58 +0.3 1,611,571 - EX28DRAFT_1595 0.58 +1.5 1,611,671 + EX28DRAFT_1595 0.68 -0.7 1,611,672 - EX28DRAFT_1595 0.68 -0.5 1,611,729 - EX28DRAFT_1595 0.74 -0.4 1,611,818 + EX28DRAFT_1595 0.83 +1.0 1,611,819 - EX28DRAFT_1595 0.83 -1.4 1,611,819 - EX28DRAFT_1595 0.83 +0.1 1,611,819 - EX28DRAFT_1595 0.83 -1.4 1,611,842 + EX28DRAFT_1595 0.85 -0.7 1,611,902 + -2.5 1,611,903 - +0.1 1,611,906 + -1.4 1,611,906 + +0.2 1,611,906 + +0.3 1,611,906 + +0.7 1,611,906 + +0.6 1,611,907 - -0.4 1,611,907 - +0.3 1,611,979 + -2.7 1,611,990 + +0.1 1,611,990 + -0.1 1,612,034 + +2.0 1,612,215 + EX28DRAFT_1596 0.41 -0.1 1,612,496 + +0.4 1,612,511 + +0.6 1,612,511 + -0.7 1,612,538 + +3.7 1,612,538 + -0.8 1,612,542 + -0.2 1,612,542 + +0.7 1,612,759 + +0.2 1,612,759 + -0.0 1,612,759 + +0.1 1,612,846 + -0.6 1,612,846 + +0.4 1,612,857 + -0.0
Or see this region's nucleotide sequence