Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1595

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1593 and EX28DRAFT_1594 are separated by 119 nucleotidesEX28DRAFT_1594 and EX28DRAFT_1595 overlap by 4 nucleotidesEX28DRAFT_1595 and EX28DRAFT_1596 overlap by 4 nucleotidesEX28DRAFT_1596 and EX28DRAFT_1597 are separated by 319 nucleotides EX28DRAFT_1593: EX28DRAFT_1593 - hypothetical protein, at 1,609,964 to 1,610,182 _1593 EX28DRAFT_1594: EX28DRAFT_1594 - phage replication protein P, at 1,610,302 to 1,610,988 _1594 EX28DRAFT_1595: EX28DRAFT_1595 - phage replication protein O, at 1,610,985 to 1,611,990 _1595 EX28DRAFT_1596: EX28DRAFT_1596 - Protein of unknown function (DUF1019), at 1,611,987 to 1,612,538 _1596 EX28DRAFT_1597: EX28DRAFT_1597 - Helix-turn-helix, at 1,612,858 to 1,613,241 _1597 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1610.218 kb on - strandat 1610.227 kb on - strandat 1610.255 kb on - strandat 1610.267 kb on + strandat 1610.267 kb on + strandat 1610.272 kb on + strandat 1610.273 kb on - strandat 1610.273 kb on - strandat 1610.303 kb on + strandat 1610.333 kb on + strandat 1610.446 kb on - strand, within EX28DRAFT_1594at 1610.527 kb on + strand, within EX28DRAFT_1594at 1610.527 kb on + strand, within EX28DRAFT_1594at 1610.527 kb on + strand, within EX28DRAFT_1594at 1610.527 kb on + strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.528 kb on - strand, within EX28DRAFT_1594at 1610.529 kb on + strand, within EX28DRAFT_1594at 1610.529 kb on + strand, within EX28DRAFT_1594at 1610.529 kb on + strand, within EX28DRAFT_1594at 1610.529 kb on + strand, within EX28DRAFT_1594at 1610.529 kb on + strand, within EX28DRAFT_1594at 1610.530 kb on - strand, within EX28DRAFT_1594at 1610.530 kb on - strand, within EX28DRAFT_1594at 1610.530 kb on - strand, within EX28DRAFT_1594at 1611.018 kb on - strandat 1611.219 kb on - strand, within EX28DRAFT_1595at 1611.219 kb on - strand, within EX28DRAFT_1595at 1611.280 kb on + strand, within EX28DRAFT_1595at 1611.327 kb on - strand, within EX28DRAFT_1595at 1611.340 kb on + strand, within EX28DRAFT_1595at 1611.340 kb on + strand, within EX28DRAFT_1595at 1611.340 kb on + strand, within EX28DRAFT_1595at 1611.341 kb on - strand, within EX28DRAFT_1595at 1611.341 kb on - strand, within EX28DRAFT_1595at 1611.342 kb on + strand, within EX28DRAFT_1595at 1611.434 kb on + strand, within EX28DRAFT_1595at 1611.435 kb on - strand, within EX28DRAFT_1595at 1611.446 kb on + strand, within EX28DRAFT_1595at 1611.447 kb on - strand, within EX28DRAFT_1595at 1611.447 kb on - strand, within EX28DRAFT_1595at 1611.447 kb on - strand, within EX28DRAFT_1595at 1611.448 kb on + strand, within EX28DRAFT_1595at 1611.448 kb on + strand, within EX28DRAFT_1595at 1611.570 kb on + strand, within EX28DRAFT_1595at 1611.571 kb on - strand, within EX28DRAFT_1595at 1611.671 kb on + strand, within EX28DRAFT_1595at 1611.672 kb on - strand, within EX28DRAFT_1595at 1611.729 kb on - strand, within EX28DRAFT_1595at 1611.818 kb on + strand, within EX28DRAFT_1595at 1611.819 kb on - strand, within EX28DRAFT_1595at 1611.819 kb on - strand, within EX28DRAFT_1595at 1611.819 kb on - strand, within EX28DRAFT_1595at 1611.842 kb on + strand, within EX28DRAFT_1595at 1611.902 kb on + strandat 1611.903 kb on - strandat 1611.906 kb on + strandat 1611.906 kb on + strandat 1611.906 kb on + strandat 1611.906 kb on + strandat 1611.906 kb on + strandat 1611.907 kb on - strandat 1611.907 kb on - strandat 1611.979 kb on + strandat 1611.990 kb on + strandat 1611.990 kb on + strandat 1612.034 kb on + strandat 1612.215 kb on + strand, within EX28DRAFT_1596at 1612.496 kb on + strandat 1612.511 kb on + strandat 1612.511 kb on + strandat 1612.538 kb on + strandat 1612.538 kb on + strandat 1612.542 kb on + strandat 1612.542 kb on + strandat 1612.759 kb on + strandat 1612.759 kb on + strandat 1612.759 kb on + strandat 1612.846 kb on + strandat 1612.846 kb on + strandat 1612.857 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,610,218 - -0.6
1,610,227 - -0.1
1,610,255 - +0.5
1,610,267 + -0.6
1,610,267 + +0.1
1,610,272 + -0.2
1,610,273 - -0.2
1,610,273 - +0.2
1,610,303 + +0.3
1,610,333 + -1.4
1,610,446 - EX28DRAFT_1594 0.21 -0.2
1,610,527 + EX28DRAFT_1594 0.33 -0.6
1,610,527 + EX28DRAFT_1594 0.33 -0.1
1,610,527 + EX28DRAFT_1594 0.33 +0.2
1,610,527 + EX28DRAFT_1594 0.33 -0.3
1,610,528 - EX28DRAFT_1594 0.33 -0.4
1,610,528 - EX28DRAFT_1594 0.33 +0.1
1,610,528 - EX28DRAFT_1594 0.33 -0.2
1,610,528 - EX28DRAFT_1594 0.33 +0.9
1,610,528 - EX28DRAFT_1594 0.33 -1.0
1,610,528 - EX28DRAFT_1594 0.33 +0.7
1,610,528 - EX28DRAFT_1594 0.33 -0.1
1,610,528 - EX28DRAFT_1594 0.33 +2.7
1,610,529 + EX28DRAFT_1594 0.33 -0.8
1,610,529 + EX28DRAFT_1594 0.33 +0.1
1,610,529 + EX28DRAFT_1594 0.33 -2.0
1,610,529 + EX28DRAFT_1594 0.33 -0.7
1,610,529 + EX28DRAFT_1594 0.33 -0.7
1,610,530 - EX28DRAFT_1594 0.33 -0.2
1,610,530 - EX28DRAFT_1594 0.33 +2.0
1,610,530 - EX28DRAFT_1594 0.33 -0.2
1,611,018 - -0.1
1,611,219 - EX28DRAFT_1595 0.23 -0.1
1,611,219 - EX28DRAFT_1595 0.23 +0.2
1,611,280 + EX28DRAFT_1595 0.29 -0.3
1,611,327 - EX28DRAFT_1595 0.34 -0.5
1,611,340 + EX28DRAFT_1595 0.35 -0.4
1,611,340 + EX28DRAFT_1595 0.35 +1.6
1,611,340 + EX28DRAFT_1595 0.35 -0.6
1,611,341 - EX28DRAFT_1595 0.35 -0.1
1,611,341 - EX28DRAFT_1595 0.35 +0.6
1,611,342 + EX28DRAFT_1595 0.35 +0.6
1,611,434 + EX28DRAFT_1595 0.45 +0.9
1,611,435 - EX28DRAFT_1595 0.45 +0.0
1,611,446 + EX28DRAFT_1595 0.46 +0.4
1,611,447 - EX28DRAFT_1595 0.46 +1.3
1,611,447 - EX28DRAFT_1595 0.46 +0.6
1,611,447 - EX28DRAFT_1595 0.46 +0.6
1,611,448 + EX28DRAFT_1595 0.46 -0.2
1,611,448 + EX28DRAFT_1595 0.46 -0.1
1,611,570 + EX28DRAFT_1595 0.58 +0.3
1,611,571 - EX28DRAFT_1595 0.58 +1.5
1,611,671 + EX28DRAFT_1595 0.68 -0.7
1,611,672 - EX28DRAFT_1595 0.68 -0.5
1,611,729 - EX28DRAFT_1595 0.74 -0.4
1,611,818 + EX28DRAFT_1595 0.83 +1.0
1,611,819 - EX28DRAFT_1595 0.83 -1.4
1,611,819 - EX28DRAFT_1595 0.83 +0.1
1,611,819 - EX28DRAFT_1595 0.83 -1.4
1,611,842 + EX28DRAFT_1595 0.85 -0.7
1,611,902 + -2.5
1,611,903 - +0.1
1,611,906 + -1.4
1,611,906 + +0.2
1,611,906 + +0.3
1,611,906 + +0.7
1,611,906 + +0.6
1,611,907 - -0.4
1,611,907 - +0.3
1,611,979 + -2.7
1,611,990 + +0.1
1,611,990 + -0.1
1,612,034 + +2.0
1,612,215 + EX28DRAFT_1596 0.41 -0.1
1,612,496 + +0.4
1,612,511 + +0.6
1,612,511 + -0.7
1,612,538 + +3.7
1,612,538 + -0.8
1,612,542 + -0.2
1,612,542 + +0.7
1,612,759 + +0.2
1,612,759 + -0.0
1,612,759 + +0.1
1,612,846 + -0.6
1,612,846 + +0.4
1,612,857 + -0.0

Or see this region's nucleotide sequence