Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1530

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1528 and EX28DRAFT_1529 overlap by 17 nucleotidesEX28DRAFT_1529 and EX28DRAFT_1530 are separated by 287 nucleotidesEX28DRAFT_1530 and EX28DRAFT_1531 are separated by 45 nucleotides EX28DRAFT_1528: EX28DRAFT_1528 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 1,543,420 to 1,544,682 _1528 EX28DRAFT_1529: EX28DRAFT_1529 - Peptidase S24-like, at 1,544,666 to 1,545,100 _1529 EX28DRAFT_1530: EX28DRAFT_1530 - hypothetical protein, at 1,545,388 to 1,545,588 _1530 EX28DRAFT_1531: EX28DRAFT_1531 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 1,545,634 to 1,546,500 _1531 Position (kb) 1545 1546Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1544.391 kb on - strand, within EX28DRAFT_1528at 1544.454 kb on - strand, within EX28DRAFT_1528at 1544.519 kb on + strand, within EX28DRAFT_1528at 1544.658 kb on + strandat 1544.686 kb on + strandat 1544.686 kb on + strandat 1544.687 kb on - strandat 1544.804 kb on + strand, within EX28DRAFT_1529at 1545.003 kb on + strand, within EX28DRAFT_1529at 1545.003 kb on + strand, within EX28DRAFT_1529at 1545.003 kb on + strand, within EX28DRAFT_1529at 1545.004 kb on - strand, within EX28DRAFT_1529at 1545.004 kb on - strand, within EX28DRAFT_1529at 1545.126 kb on + strandat 1545.216 kb on - strandat 1545.258 kb on + strandat 1545.301 kb on + strandat 1545.491 kb on - strand, within EX28DRAFT_1530at 1545.519 kb on + strand, within EX28DRAFT_1530at 1545.630 kb on - strandat 1545.630 kb on - strandat 1545.846 kb on + strand, within EX28DRAFT_1531at 1545.875 kb on + strand, within EX28DRAFT_1531at 1545.876 kb on - strand, within EX28DRAFT_1531at 1545.876 kb on - strand, within EX28DRAFT_1531at 1545.938 kb on + strand, within EX28DRAFT_1531at 1545.938 kb on + strand, within EX28DRAFT_1531at 1545.938 kb on + strand, within EX28DRAFT_1531at 1545.938 kb on + strand, within EX28DRAFT_1531at 1545.938 kb on + strand, within EX28DRAFT_1531at 1545.939 kb on - strand, within EX28DRAFT_1531at 1545.939 kb on - strand, within EX28DRAFT_1531at 1546.042 kb on + strand, within EX28DRAFT_1531at 1546.327 kb on - strand, within EX28DRAFT_1531at 1546.436 kb on + strandat 1546.473 kb on - strandat 1546.486 kb on - strandat 1546.558 kb on + strandat 1546.574 kb on - strandat 1546.577 kb on + strandat 1546.578 kb on - strandat 1546.578 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,544,391 - EX28DRAFT_1528 0.77 +2.0
1,544,454 - EX28DRAFT_1528 0.82 -0.4
1,544,519 + EX28DRAFT_1528 0.87 +0.4
1,544,658 + -0.0
1,544,686 + -0.4
1,544,686 + +0.2
1,544,687 - -2.3
1,544,804 + EX28DRAFT_1529 0.32 +0.5
1,545,003 + EX28DRAFT_1529 0.77 -1.9
1,545,003 + EX28DRAFT_1529 0.77 -0.2
1,545,003 + EX28DRAFT_1529 0.77 -0.4
1,545,004 - EX28DRAFT_1529 0.78 +0.0
1,545,004 - EX28DRAFT_1529 0.78 -0.0
1,545,126 + -0.1
1,545,216 - -1.3
1,545,258 + -1.5
1,545,301 + +0.3
1,545,491 - EX28DRAFT_1530 0.51 -2.2
1,545,519 + EX28DRAFT_1530 0.65 -0.8
1,545,630 - -0.3
1,545,630 - +0.9
1,545,846 + EX28DRAFT_1531 0.24 -2.8
1,545,875 + EX28DRAFT_1531 0.28 +0.1
1,545,876 - EX28DRAFT_1531 0.28 +0.4
1,545,876 - EX28DRAFT_1531 0.28 +0.0
1,545,938 + EX28DRAFT_1531 0.35 -1.0
1,545,938 + EX28DRAFT_1531 0.35 -0.7
1,545,938 + EX28DRAFT_1531 0.35 +0.7
1,545,938 + EX28DRAFT_1531 0.35 -0.2
1,545,938 + EX28DRAFT_1531 0.35 -0.1
1,545,939 - EX28DRAFT_1531 0.35 -0.0
1,545,939 - EX28DRAFT_1531 0.35 -0.0
1,546,042 + EX28DRAFT_1531 0.47 +0.2
1,546,327 - EX28DRAFT_1531 0.80 -0.1
1,546,436 + -0.0
1,546,473 - +0.7
1,546,486 - +0.5
1,546,558 + +0.3
1,546,574 - -1.0
1,546,577 + -2.0
1,546,578 - -0.5
1,546,578 - +0.0

Or see this region's nucleotide sequence