Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1523

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1522 and EX28DRAFT_1523 overlap by 29 nucleotidesEX28DRAFT_1523 and EX28DRAFT_1524 are separated by 48 nucleotides EX28DRAFT_1522: EX28DRAFT_1522 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 1,537,547 to 1,539,001 _1522 EX28DRAFT_1523: EX28DRAFT_1523 - Transcriptional regulator, at 1,538,973 to 1,539,944 _1523 EX28DRAFT_1524: EX28DRAFT_1524 - Dioxygenases related to 2-nitropropane dioxygenase, at 1,539,993 to 1,540,973 _1524 Position (kb) 1538 1539 1540Strain fitness (log2 ratio) -1 0 1 2at 1538.563 kb on - strand, within EX28DRAFT_1522at 1538.643 kb on - strand, within EX28DRAFT_1522at 1538.874 kb on + strandat 1539.105 kb on + strand, within EX28DRAFT_1523at 1539.105 kb on + strand, within EX28DRAFT_1523at 1539.105 kb on + strand, within EX28DRAFT_1523at 1539.106 kb on - strand, within EX28DRAFT_1523at 1539.106 kb on - strand, within EX28DRAFT_1523at 1539.106 kb on - strand, within EX28DRAFT_1523at 1539.109 kb on + strand, within EX28DRAFT_1523at 1539.109 kb on + strand, within EX28DRAFT_1523at 1539.110 kb on - strand, within EX28DRAFT_1523at 1539.110 kb on - strand, within EX28DRAFT_1523at 1539.110 kb on - strand, within EX28DRAFT_1523at 1539.173 kb on - strand, within EX28DRAFT_1523at 1539.173 kb on - strand, within EX28DRAFT_1523at 1539.213 kb on - strand, within EX28DRAFT_1523at 1539.239 kb on + strand, within EX28DRAFT_1523at 1539.239 kb on + strand, within EX28DRAFT_1523at 1539.240 kb on - strand, within EX28DRAFT_1523at 1539.272 kb on + strand, within EX28DRAFT_1523at 1539.395 kb on + strand, within EX28DRAFT_1523at 1539.397 kb on + strand, within EX28DRAFT_1523at 1539.398 kb on - strand, within EX28DRAFT_1523at 1539.585 kb on + strand, within EX28DRAFT_1523at 1539.585 kb on + strand, within EX28DRAFT_1523at 1539.616 kb on - strand, within EX28DRAFT_1523at 1539.684 kb on - strand, within EX28DRAFT_1523at 1539.955 kb on + strandat 1540.007 kb on + strandat 1540.007 kb on + strandat 1540.040 kb on + strandat 1540.278 kb on - strand, within EX28DRAFT_1524at 1540.320 kb on + strand, within EX28DRAFT_1524at 1540.321 kb on - strand, within EX28DRAFT_1524at 1540.746 kb on + strand, within EX28DRAFT_1524at 1540.747 kb on - strand, within EX28DRAFT_1524at 1540.890 kb on + strandat 1540.890 kb on + strandat 1540.891 kb on - strandat 1540.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,538,563 - EX28DRAFT_1522 0.70 -0.3
1,538,643 - EX28DRAFT_1522 0.75 +2.5
1,538,874 + -0.5
1,539,105 + EX28DRAFT_1523 0.14 +0.1
1,539,105 + EX28DRAFT_1523 0.14 +0.2
1,539,105 + EX28DRAFT_1523 0.14 +0.6
1,539,106 - EX28DRAFT_1523 0.14 -0.9
1,539,106 - EX28DRAFT_1523 0.14 +0.4
1,539,106 - EX28DRAFT_1523 0.14 +0.2
1,539,109 + EX28DRAFT_1523 0.14 -0.2
1,539,109 + EX28DRAFT_1523 0.14 -0.2
1,539,110 - EX28DRAFT_1523 0.14 -0.5
1,539,110 - EX28DRAFT_1523 0.14 -0.5
1,539,110 - EX28DRAFT_1523 0.14 +0.2
1,539,173 - EX28DRAFT_1523 0.21 +1.6
1,539,173 - EX28DRAFT_1523 0.21 +0.9
1,539,213 - EX28DRAFT_1523 0.25 +0.6
1,539,239 + EX28DRAFT_1523 0.27 -0.2
1,539,239 + EX28DRAFT_1523 0.27 +1.3
1,539,240 - EX28DRAFT_1523 0.27 -1.0
1,539,272 + EX28DRAFT_1523 0.31 +0.7
1,539,395 + EX28DRAFT_1523 0.43 -1.0
1,539,397 + EX28DRAFT_1523 0.44 -0.2
1,539,398 - EX28DRAFT_1523 0.44 +0.0
1,539,585 + EX28DRAFT_1523 0.63 +0.3
1,539,585 + EX28DRAFT_1523 0.63 +0.5
1,539,616 - EX28DRAFT_1523 0.66 -0.6
1,539,684 - EX28DRAFT_1523 0.73 +0.1
1,539,955 + -0.2
1,540,007 + +1.2
1,540,007 + +0.5
1,540,040 + -0.2
1,540,278 - EX28DRAFT_1524 0.29 +0.9
1,540,320 + EX28DRAFT_1524 0.33 +0.2
1,540,321 - EX28DRAFT_1524 0.33 +0.5
1,540,746 + EX28DRAFT_1524 0.77 -0.1
1,540,747 - EX28DRAFT_1524 0.77 +0.5
1,540,890 + +0.3
1,540,890 + +0.3
1,540,891 - -0.2
1,540,893 - +0.1

Or see this region's nucleotide sequence