Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1478

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1477 and EX28DRAFT_1478 are separated by 701 nucleotidesEX28DRAFT_1478 and EX28DRAFT_1479 are separated by 210 nucleotidesEX28DRAFT_1479 and EX28DRAFT_1480 are separated by 88 nucleotides EX28DRAFT_1477: EX28DRAFT_1477 - Uncharacterized protein conserved in bacteria, at 1,492,369 to 1,492,686 _1477 EX28DRAFT_1478: EX28DRAFT_1478 - Pili and flagellar-assembly chaperone, PapD N-terminal domain, at 1,493,388 to 1,493,933 _1478 EX28DRAFT_1479: EX28DRAFT_1479 - hypothetical protein, at 1,494,144 to 1,494,767 _1479 EX28DRAFT_1480: EX28DRAFT_1480 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,494,856 to 1,495,467 _1480 Position (kb) 1493 1494Strain fitness (log2 ratio) -3 -2 -1 0 1at 1492.399 kb on - strandat 1492.578 kb on + strand, within EX28DRAFT_1477at 1492.854 kb on + strandat 1492.862 kb on - strandat 1492.876 kb on - strandat 1492.879 kb on + strandat 1492.891 kb on + strandat 1492.892 kb on - strandat 1492.919 kb on + strandat 1492.923 kb on + strandat 1492.965 kb on - strandat 1492.990 kb on - strandat 1492.990 kb on - strandat 1492.990 kb on - strandat 1492.990 kb on - strandat 1492.993 kb on - strandat 1493.002 kb on + strandat 1493.003 kb on - strandat 1493.159 kb on - strandat 1493.679 kb on - strand, within EX28DRAFT_1478at 1493.730 kb on - strand, within EX28DRAFT_1478at 1493.748 kb on - strand, within EX28DRAFT_1478at 1493.907 kb on - strandat 1493.909 kb on + strandat 1493.910 kb on - strandat 1493.931 kb on + strandat 1494.014 kb on - strandat 1494.306 kb on + strand, within EX28DRAFT_1479at 1494.499 kb on - strand, within EX28DRAFT_1479at 1494.499 kb on - strand, within EX28DRAFT_1479at 1494.500 kb on + strand, within EX28DRAFT_1479at 1494.505 kb on - strand, within EX28DRAFT_1479at 1494.694 kb on + strand, within EX28DRAFT_1479at 1494.815 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,492,399 - -0.5
1,492,578 + EX28DRAFT_1477 0.66 +0.3
1,492,854 + -0.3
1,492,862 - -0.5
1,492,876 - -0.7
1,492,879 + +0.3
1,492,891 + -0.2
1,492,892 - +0.5
1,492,919 + +0.9
1,492,923 + -0.2
1,492,965 - -2.3
1,492,990 - -0.3
1,492,990 - -3.7
1,492,990 - -3.1
1,492,990 - +0.2
1,492,993 - -0.2
1,493,002 + +0.5
1,493,003 - +0.1
1,493,159 - +1.1
1,493,679 - EX28DRAFT_1478 0.53 -1.9
1,493,730 - EX28DRAFT_1478 0.63 +0.8
1,493,748 - EX28DRAFT_1478 0.66 -0.6
1,493,907 - +0.6
1,493,909 + -0.2
1,493,910 - +0.2
1,493,931 + +0.1
1,494,014 - +0.7
1,494,306 + EX28DRAFT_1479 0.26 -1.5
1,494,499 - EX28DRAFT_1479 0.57 -0.3
1,494,499 - EX28DRAFT_1479 0.57 -0.3
1,494,500 + EX28DRAFT_1479 0.57 -0.4
1,494,505 - EX28DRAFT_1479 0.58 -0.5
1,494,694 + EX28DRAFT_1479 0.88 +0.3
1,494,815 + -0.1

Or see this region's nucleotide sequence