Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1477 and EX28DRAFT_1478 are separated by 701 nucleotides EX28DRAFT_1478 and EX28DRAFT_1479 are separated by 210 nucleotides EX28DRAFT_1479 and EX28DRAFT_1480 are separated by 88 nucleotides
EX28DRAFT_1477: EX28DRAFT_1477 - Uncharacterized protein conserved in bacteria, at 1,492,369 to 1,492,686
_1477
EX28DRAFT_1478: EX28DRAFT_1478 - Pili and flagellar-assembly chaperone, PapD N-terminal domain, at 1,493,388 to 1,493,933
_1478
EX28DRAFT_1479: EX28DRAFT_1479 - hypothetical protein, at 1,494,144 to 1,494,767
_1479
EX28DRAFT_1480: EX28DRAFT_1480 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,494,856 to 1,495,467
_1480
Position (kb)
1493
1494 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1492.399 kb on - strand at 1492.578 kb on + strand, within EX28DRAFT_1477 at 1492.854 kb on + strand at 1492.862 kb on - strand at 1492.876 kb on - strand at 1492.879 kb on + strand at 1492.891 kb on + strand at 1492.892 kb on - strand at 1492.919 kb on + strand at 1492.923 kb on + strand at 1492.965 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.993 kb on - strand at 1493.002 kb on + strand at 1493.003 kb on - strand at 1493.159 kb on - strand at 1493.679 kb on - strand, within EX28DRAFT_1478 at 1493.730 kb on - strand, within EX28DRAFT_1478 at 1493.748 kb on - strand, within EX28DRAFT_1478 at 1493.907 kb on - strand at 1493.909 kb on + strand at 1493.910 kb on - strand at 1493.931 kb on + strand at 1494.014 kb on - strand at 1494.306 kb on + strand, within EX28DRAFT_1479 at 1494.499 kb on - strand, within EX28DRAFT_1479 at 1494.499 kb on - strand, within EX28DRAFT_1479 at 1494.500 kb on + strand, within EX28DRAFT_1479 at 1494.505 kb on - strand, within EX28DRAFT_1479 at 1494.694 kb on + strand, within EX28DRAFT_1479 at 1494.815 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,492,399 - -0.5 1,492,578 + EX28DRAFT_1477 0.66 +0.3 1,492,854 + -0.3 1,492,862 - -0.5 1,492,876 - -0.7 1,492,879 + +0.3 1,492,891 + -0.2 1,492,892 - +0.5 1,492,919 + +0.9 1,492,923 + -0.2 1,492,965 - -2.3 1,492,990 - -0.3 1,492,990 - -3.7 1,492,990 - -3.1 1,492,990 - +0.2 1,492,993 - -0.2 1,493,002 + +0.5 1,493,003 - +0.1 1,493,159 - +1.1 1,493,679 - EX28DRAFT_1478 0.53 -1.9 1,493,730 - EX28DRAFT_1478 0.63 +0.8 1,493,748 - EX28DRAFT_1478 0.66 -0.6 1,493,907 - +0.6 1,493,909 + -0.2 1,493,910 - +0.2 1,493,931 + +0.1 1,494,014 - +0.7 1,494,306 + EX28DRAFT_1479 0.26 -1.5 1,494,499 - EX28DRAFT_1479 0.57 -0.3 1,494,499 - EX28DRAFT_1479 0.57 -0.3 1,494,500 + EX28DRAFT_1479 0.57 -0.4 1,494,505 - EX28DRAFT_1479 0.58 -0.5 1,494,694 + EX28DRAFT_1479 0.88 +0.3 1,494,815 + -0.1
Or see this region's nucleotide sequence