Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1472 and EX28DRAFT_1473 are separated by 23 nucleotides EX28DRAFT_1473 and EX28DRAFT_1474 are separated by 336 nucleotides EX28DRAFT_1474 and EX28DRAFT_1475 overlap by 77 nucleotides
EX28DRAFT_1472: EX28DRAFT_1472 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 1,485,331 to 1,488,486
_1472
EX28DRAFT_1473: EX28DRAFT_1473 - RND family efflux transporter, MFP subunit, at 1,488,510 to 1,489,685
_1473
EX28DRAFT_1474: EX28DRAFT_1474 - AraC-type DNA-binding domain-containing proteins, at 1,490,022 to 1,490,372
_1474
EX28DRAFT_1475: EX28DRAFT_1475 - Transcriptional regulator, at 1,490,296 to 1,491,210
_1475
Position (kb)
1488
1489
1490 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1487.607 kb on + strand, within EX28DRAFT_1472 at 1487.607 kb on + strand, within EX28DRAFT_1472 at 1487.629 kb on - strand, within EX28DRAFT_1472 at 1487.629 kb on - strand, within EX28DRAFT_1472 at 1487.654 kb on + strand, within EX28DRAFT_1472 at 1488.011 kb on + strand, within EX28DRAFT_1472 at 1488.016 kb on - strand, within EX28DRAFT_1472 at 1488.021 kb on + strand, within EX28DRAFT_1472 at 1488.022 kb on - strand, within EX28DRAFT_1472 at 1488.023 kb on + strand, within EX28DRAFT_1472 at 1488.023 kb on + strand, within EX28DRAFT_1472 at 1488.023 kb on + strand, within EX28DRAFT_1472 at 1488.023 kb on + strand, within EX28DRAFT_1472 at 1488.023 kb on - strand, within EX28DRAFT_1472 at 1488.024 kb on - strand, within EX28DRAFT_1472 at 1488.024 kb on - strand, within EX28DRAFT_1472 at 1488.035 kb on + strand, within EX28DRAFT_1472 at 1488.251 kb on + strand at 1488.251 kb on + strand at 1488.251 kb on + strand at 1488.252 kb on - strand at 1488.252 kb on - strand at 1488.252 kb on - strand at 1488.420 kb on + strand at 1488.420 kb on + strand at 1488.421 kb on - strand at 1488.586 kb on - strand at 1488.639 kb on + strand, within EX28DRAFT_1473 at 1488.640 kb on - strand, within EX28DRAFT_1473 at 1488.696 kb on - strand, within EX28DRAFT_1473 at 1488.704 kb on + strand, within EX28DRAFT_1473 at 1488.705 kb on - strand, within EX28DRAFT_1473 at 1488.706 kb on + strand, within EX28DRAFT_1473 at 1488.706 kb on + strand, within EX28DRAFT_1473 at 1488.712 kb on + strand, within EX28DRAFT_1473 at 1488.716 kb on + strand, within EX28DRAFT_1473 at 1488.717 kb on - strand, within EX28DRAFT_1473 at 1488.717 kb on - strand, within EX28DRAFT_1473 at 1488.717 kb on - strand, within EX28DRAFT_1473 at 1489.009 kb on + strand, within EX28DRAFT_1473 at 1489.034 kb on - strand, within EX28DRAFT_1473 at 1489.439 kb on - strand, within EX28DRAFT_1473 at 1489.439 kb on - strand, within EX28DRAFT_1473 at 1489.517 kb on + strand, within EX28DRAFT_1473 at 1489.692 kb on + strand at 1489.991 kb on - strand at 1490.051 kb on - strand at 1490.157 kb on - strand, within EX28DRAFT_1474 at 1490.219 kb on - strand, within EX28DRAFT_1474 at 1490.308 kb on - strand at 1490.366 kb on - strand at 1490.366 kb on - strand at 1490.371 kb on - strand at 1490.545 kb on - strand, within EX28DRAFT_1475 at 1490.545 kb on - strand, within EX28DRAFT_1475 at 1490.612 kb on - strand, within EX28DRAFT_1475 at 1490.623 kb on + strand, within EX28DRAFT_1475
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,487,607 + EX28DRAFT_1472 0.72 +0.1 1,487,607 + EX28DRAFT_1472 0.72 +0.6 1,487,629 - EX28DRAFT_1472 0.73 +1.8 1,487,629 - EX28DRAFT_1472 0.73 +0.3 1,487,654 + EX28DRAFT_1472 0.74 +0.8 1,488,011 + EX28DRAFT_1472 0.85 -1.7 1,488,016 - EX28DRAFT_1472 0.85 +0.8 1,488,021 + EX28DRAFT_1472 0.85 -0.5 1,488,022 - EX28DRAFT_1472 0.85 +0.5 1,488,023 + EX28DRAFT_1472 0.85 -4.1 1,488,023 + EX28DRAFT_1472 0.85 -1.5 1,488,023 + EX28DRAFT_1472 0.85 +1.0 1,488,023 + EX28DRAFT_1472 0.85 -0.0 1,488,023 - EX28DRAFT_1472 0.85 +0.7 1,488,024 - EX28DRAFT_1472 0.85 -0.3 1,488,024 - EX28DRAFT_1472 0.85 -0.1 1,488,035 + EX28DRAFT_1472 0.86 +0.2 1,488,251 + +1.5 1,488,251 + -0.4 1,488,251 + +0.4 1,488,252 - +1.0 1,488,252 - +0.9 1,488,252 - -1.5 1,488,420 + +0.2 1,488,420 + +1.8 1,488,421 - +0.0 1,488,586 - -0.2 1,488,639 + EX28DRAFT_1473 0.11 +1.3 1,488,640 - EX28DRAFT_1473 0.11 +0.0 1,488,696 - EX28DRAFT_1473 0.16 +0.2 1,488,704 + EX28DRAFT_1473 0.16 -0.7 1,488,705 - EX28DRAFT_1473 0.17 +0.4 1,488,706 + EX28DRAFT_1473 0.17 +0.2 1,488,706 + EX28DRAFT_1473 0.17 +0.6 1,488,712 + EX28DRAFT_1473 0.17 +0.5 1,488,716 + EX28DRAFT_1473 0.18 +1.4 1,488,717 - EX28DRAFT_1473 0.18 -0.5 1,488,717 - EX28DRAFT_1473 0.18 +0.4 1,488,717 - EX28DRAFT_1473 0.18 +1.3 1,489,009 + EX28DRAFT_1473 0.42 -1.0 1,489,034 - EX28DRAFT_1473 0.45 +0.5 1,489,439 - EX28DRAFT_1473 0.79 +0.9 1,489,439 - EX28DRAFT_1473 0.79 -0.4 1,489,517 + EX28DRAFT_1473 0.86 -0.1 1,489,692 + -0.5 1,489,991 - +1.7 1,490,051 - +0.4 1,490,157 - EX28DRAFT_1474 0.38 -0.3 1,490,219 - EX28DRAFT_1474 0.56 +0.9 1,490,308 - -0.1 1,490,366 - +0.5 1,490,366 - -0.1 1,490,371 - +0.4 1,490,545 - EX28DRAFT_1475 0.27 +0.1 1,490,545 - EX28DRAFT_1475 0.27 -3.1 1,490,612 - EX28DRAFT_1475 0.35 +0.7 1,490,623 + EX28DRAFT_1475 0.36 +2.5
Or see this region's nucleotide sequence