Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1473

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1472 and EX28DRAFT_1473 are separated by 23 nucleotidesEX28DRAFT_1473 and EX28DRAFT_1474 are separated by 336 nucleotidesEX28DRAFT_1474 and EX28DRAFT_1475 overlap by 77 nucleotides EX28DRAFT_1472: EX28DRAFT_1472 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 1,485,331 to 1,488,486 _1472 EX28DRAFT_1473: EX28DRAFT_1473 - RND family efflux transporter, MFP subunit, at 1,488,510 to 1,489,685 _1473 EX28DRAFT_1474: EX28DRAFT_1474 - AraC-type DNA-binding domain-containing proteins, at 1,490,022 to 1,490,372 _1474 EX28DRAFT_1475: EX28DRAFT_1475 - Transcriptional regulator, at 1,490,296 to 1,491,210 _1475 Position (kb) 1488 1489 1490Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1487.607 kb on + strand, within EX28DRAFT_1472at 1487.607 kb on + strand, within EX28DRAFT_1472at 1487.629 kb on - strand, within EX28DRAFT_1472at 1487.629 kb on - strand, within EX28DRAFT_1472at 1487.654 kb on + strand, within EX28DRAFT_1472at 1488.011 kb on + strand, within EX28DRAFT_1472at 1488.016 kb on - strand, within EX28DRAFT_1472at 1488.021 kb on + strand, within EX28DRAFT_1472at 1488.022 kb on - strand, within EX28DRAFT_1472at 1488.023 kb on + strand, within EX28DRAFT_1472at 1488.023 kb on + strand, within EX28DRAFT_1472at 1488.023 kb on + strand, within EX28DRAFT_1472at 1488.023 kb on + strand, within EX28DRAFT_1472at 1488.023 kb on - strand, within EX28DRAFT_1472at 1488.024 kb on - strand, within EX28DRAFT_1472at 1488.024 kb on - strand, within EX28DRAFT_1472at 1488.035 kb on + strand, within EX28DRAFT_1472at 1488.251 kb on + strandat 1488.251 kb on + strandat 1488.251 kb on + strandat 1488.252 kb on - strandat 1488.252 kb on - strandat 1488.252 kb on - strandat 1488.420 kb on + strandat 1488.420 kb on + strandat 1488.421 kb on - strandat 1488.586 kb on - strandat 1488.639 kb on + strand, within EX28DRAFT_1473at 1488.640 kb on - strand, within EX28DRAFT_1473at 1488.696 kb on - strand, within EX28DRAFT_1473at 1488.704 kb on + strand, within EX28DRAFT_1473at 1488.705 kb on - strand, within EX28DRAFT_1473at 1488.706 kb on + strand, within EX28DRAFT_1473at 1488.706 kb on + strand, within EX28DRAFT_1473at 1488.712 kb on + strand, within EX28DRAFT_1473at 1488.716 kb on + strand, within EX28DRAFT_1473at 1488.717 kb on - strand, within EX28DRAFT_1473at 1488.717 kb on - strand, within EX28DRAFT_1473at 1488.717 kb on - strand, within EX28DRAFT_1473at 1489.009 kb on + strand, within EX28DRAFT_1473at 1489.034 kb on - strand, within EX28DRAFT_1473at 1489.439 kb on - strand, within EX28DRAFT_1473at 1489.439 kb on - strand, within EX28DRAFT_1473at 1489.517 kb on + strand, within EX28DRAFT_1473at 1489.692 kb on + strandat 1489.991 kb on - strandat 1490.051 kb on - strandat 1490.157 kb on - strand, within EX28DRAFT_1474at 1490.219 kb on - strand, within EX28DRAFT_1474at 1490.308 kb on - strandat 1490.366 kb on - strandat 1490.366 kb on - strandat 1490.371 kb on - strandat 1490.545 kb on - strand, within EX28DRAFT_1475at 1490.545 kb on - strand, within EX28DRAFT_1475at 1490.612 kb on - strand, within EX28DRAFT_1475at 1490.623 kb on + strand, within EX28DRAFT_1475

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,487,607 + EX28DRAFT_1472 0.72 +0.1
1,487,607 + EX28DRAFT_1472 0.72 +0.6
1,487,629 - EX28DRAFT_1472 0.73 +1.8
1,487,629 - EX28DRAFT_1472 0.73 +0.3
1,487,654 + EX28DRAFT_1472 0.74 +0.8
1,488,011 + EX28DRAFT_1472 0.85 -1.7
1,488,016 - EX28DRAFT_1472 0.85 +0.8
1,488,021 + EX28DRAFT_1472 0.85 -0.5
1,488,022 - EX28DRAFT_1472 0.85 +0.5
1,488,023 + EX28DRAFT_1472 0.85 -4.1
1,488,023 + EX28DRAFT_1472 0.85 -1.5
1,488,023 + EX28DRAFT_1472 0.85 +1.0
1,488,023 + EX28DRAFT_1472 0.85 -0.0
1,488,023 - EX28DRAFT_1472 0.85 +0.7
1,488,024 - EX28DRAFT_1472 0.85 -0.3
1,488,024 - EX28DRAFT_1472 0.85 -0.1
1,488,035 + EX28DRAFT_1472 0.86 +0.2
1,488,251 + +1.5
1,488,251 + -0.4
1,488,251 + +0.4
1,488,252 - +1.0
1,488,252 - +0.9
1,488,252 - -1.5
1,488,420 + +0.2
1,488,420 + +1.8
1,488,421 - +0.0
1,488,586 - -0.2
1,488,639 + EX28DRAFT_1473 0.11 +1.3
1,488,640 - EX28DRAFT_1473 0.11 +0.0
1,488,696 - EX28DRAFT_1473 0.16 +0.2
1,488,704 + EX28DRAFT_1473 0.16 -0.7
1,488,705 - EX28DRAFT_1473 0.17 +0.4
1,488,706 + EX28DRAFT_1473 0.17 +0.2
1,488,706 + EX28DRAFT_1473 0.17 +0.6
1,488,712 + EX28DRAFT_1473 0.17 +0.5
1,488,716 + EX28DRAFT_1473 0.18 +1.4
1,488,717 - EX28DRAFT_1473 0.18 -0.5
1,488,717 - EX28DRAFT_1473 0.18 +0.4
1,488,717 - EX28DRAFT_1473 0.18 +1.3
1,489,009 + EX28DRAFT_1473 0.42 -1.0
1,489,034 - EX28DRAFT_1473 0.45 +0.5
1,489,439 - EX28DRAFT_1473 0.79 +0.9
1,489,439 - EX28DRAFT_1473 0.79 -0.4
1,489,517 + EX28DRAFT_1473 0.86 -0.1
1,489,692 + -0.5
1,489,991 - +1.7
1,490,051 - +0.4
1,490,157 - EX28DRAFT_1474 0.38 -0.3
1,490,219 - EX28DRAFT_1474 0.56 +0.9
1,490,308 - -0.1
1,490,366 - +0.5
1,490,366 - -0.1
1,490,371 - +0.4
1,490,545 - EX28DRAFT_1475 0.27 +0.1
1,490,545 - EX28DRAFT_1475 0.27 -3.1
1,490,612 - EX28DRAFT_1475 0.35 +0.7
1,490,623 + EX28DRAFT_1475 0.36 +2.5

Or see this region's nucleotide sequence