Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1471

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1470 and EX28DRAFT_1471 are separated by 137 nucleotidesEX28DRAFT_1471 and EX28DRAFT_1472 are separated by 96 nucleotides EX28DRAFT_1470: EX28DRAFT_1470 - Signal transduction histidine kinase, at 1,483,229 to 1,484,617 _1470 EX28DRAFT_1471: EX28DRAFT_1471 - Predicted transcriptional regulator, at 1,484,755 to 1,485,234 _1471 EX28DRAFT_1472: EX28DRAFT_1472 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 1,485,331 to 1,488,486 _1472 Position (kb) 1484 1485 1486Strain fitness (log2 ratio) -1 0 1at 1483.834 kb on + strand, within EX28DRAFT_1470at 1483.867 kb on - strand, within EX28DRAFT_1470at 1484.312 kb on - strand, within EX28DRAFT_1470at 1484.336 kb on + strand, within EX28DRAFT_1470at 1484.337 kb on - strand, within EX28DRAFT_1470at 1484.337 kb on - strand, within EX28DRAFT_1470at 1484.547 kb on + strandat 1484.612 kb on - strandat 1484.664 kb on + strandat 1484.673 kb on + strandat 1484.673 kb on + strandat 1484.680 kb on + strandat 1484.680 kb on + strandat 1484.682 kb on + strandat 1484.699 kb on + strandat 1484.700 kb on - strandat 1484.759 kb on + strandat 1485.177 kb on + strand, within EX28DRAFT_1471at 1485.177 kb on + strand, within EX28DRAFT_1471at 1485.178 kb on - strand, within EX28DRAFT_1471at 1485.178 kb on - strand, within EX28DRAFT_1471at 1485.178 kb on - strand, within EX28DRAFT_1471at 1485.232 kb on + strandat 1485.233 kb on - strandat 1485.381 kb on + strandat 1485.391 kb on + strandat 1485.391 kb on + strandat 1485.395 kb on + strandat 1485.526 kb on - strandat 1485.545 kb on - strandat 1485.545 kb on - strandat 1485.556 kb on + strandat 1485.636 kb on + strandat 1485.760 kb on - strand, within EX28DRAFT_1472at 1485.927 kb on + strand, within EX28DRAFT_1472at 1486.043 kb on + strand, within EX28DRAFT_1472at 1486.044 kb on - strand, within EX28DRAFT_1472

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,483,834 + EX28DRAFT_1470 0.44 +0.1
1,483,867 - EX28DRAFT_1470 0.46 +0.3
1,484,312 - EX28DRAFT_1470 0.78 +0.1
1,484,336 + EX28DRAFT_1470 0.80 +0.1
1,484,337 - EX28DRAFT_1470 0.80 -1.2
1,484,337 - EX28DRAFT_1470 0.80 -0.3
1,484,547 + -0.5
1,484,612 - +0.5
1,484,664 + -1.7
1,484,673 + -0.3
1,484,673 + +0.2
1,484,680 + -0.6
1,484,680 + -0.1
1,484,682 + +0.8
1,484,699 + -0.1
1,484,700 - +0.2
1,484,759 + -1.1
1,485,177 + EX28DRAFT_1471 0.88 -1.1
1,485,177 + EX28DRAFT_1471 0.88 +0.3
1,485,178 - EX28DRAFT_1471 0.88 +0.8
1,485,178 - EX28DRAFT_1471 0.88 -1.7
1,485,178 - EX28DRAFT_1471 0.88 -1.4
1,485,232 + -0.0
1,485,233 - -0.2
1,485,381 + -0.3
1,485,391 + -0.0
1,485,391 + +0.1
1,485,395 + +0.0
1,485,526 - -1.0
1,485,545 - -0.8
1,485,545 - -0.4
1,485,556 + -0.0
1,485,636 + +1.4
1,485,760 - EX28DRAFT_1472 0.14 -0.1
1,485,927 + EX28DRAFT_1472 0.19 -0.4
1,486,043 + EX28DRAFT_1472 0.23 -0.4
1,486,044 - EX28DRAFT_1472 0.23 -0.3

Or see this region's nucleotide sequence