Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1468

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1466 and EX28DRAFT_1467 are separated by 253 nucleotidesEX28DRAFT_1467 and EX28DRAFT_1468 are separated by 123 nucleotidesEX28DRAFT_1468 and EX28DRAFT_1469 are separated by 203 nucleotidesEX28DRAFT_1469 and EX28DRAFT_1470 overlap by 1 nucleotides EX28DRAFT_1466: EX28DRAFT_1466 - Lactoylglutathione lyase and related lyases, at 1,480,161 to 1,480,586 _1466 EX28DRAFT_1467: EX28DRAFT_1467 - hypothetical protein, at 1,480,840 to 1,481,388 _1467 EX28DRAFT_1468: EX28DRAFT_1468 - Outer membrane protein V, at 1,481,512 to 1,482,348 _1468 EX28DRAFT_1469: EX28DRAFT_1469 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,482,552 to 1,483,229 _1469 EX28DRAFT_1470: EX28DRAFT_1470 - Signal transduction histidine kinase, at 1,483,229 to 1,484,617 _1470 Position (kb) 1481 1482 1483Strain fitness (log2 ratio) -3 -2 -1 0 1at 1480.566 kb on + strandat 1480.566 kb on + strandat 1480.576 kb on + strandat 1480.576 kb on + strandat 1480.576 kb on + strandat 1480.577 kb on - strandat 1480.624 kb on + strandat 1480.625 kb on - strandat 1480.625 kb on - strandat 1480.625 kb on - strandat 1480.639 kb on - strandat 1480.715 kb on - strandat 1480.766 kb on + strandat 1480.766 kb on + strandat 1480.766 kb on + strandat 1480.767 kb on - strandat 1480.767 kb on - strandat 1481.058 kb on + strand, within EX28DRAFT_1467at 1481.068 kb on + strand, within EX28DRAFT_1467at 1481.069 kb on - strand, within EX28DRAFT_1467at 1481.189 kb on + strand, within EX28DRAFT_1467at 1481.190 kb on - strand, within EX28DRAFT_1467at 1481.190 kb on - strand, within EX28DRAFT_1467at 1481.281 kb on + strand, within EX28DRAFT_1467at 1481.283 kb on + strand, within EX28DRAFT_1467at 1481.283 kb on + strand, within EX28DRAFT_1467at 1481.285 kb on + strand, within EX28DRAFT_1467at 1481.285 kb on + strand, within EX28DRAFT_1467at 1481.286 kb on - strand, within EX28DRAFT_1467at 1481.286 kb on - strand, within EX28DRAFT_1467at 1481.287 kb on + strand, within EX28DRAFT_1467at 1481.288 kb on - strand, within EX28DRAFT_1467at 1481.387 kb on - strandat 1481.463 kb on + strandat 1481.464 kb on - strandat 1481.523 kb on - strandat 1481.675 kb on + strand, within EX28DRAFT_1468at 1481.675 kb on + strand, within EX28DRAFT_1468at 1481.675 kb on + strand, within EX28DRAFT_1468at 1481.675 kb on + strand, within EX28DRAFT_1468at 1481.744 kb on + strand, within EX28DRAFT_1468at 1481.745 kb on - strand, within EX28DRAFT_1468at 1481.754 kb on + strand, within EX28DRAFT_1468at 1481.754 kb on + strand, within EX28DRAFT_1468at 1481.754 kb on + strand, within EX28DRAFT_1468at 1481.755 kb on - strand, within EX28DRAFT_1468at 1481.755 kb on - strand, within EX28DRAFT_1468at 1481.756 kb on + strand, within EX28DRAFT_1468at 1481.756 kb on + strand, within EX28DRAFT_1468at 1481.756 kb on + strand, within EX28DRAFT_1468at 1481.756 kb on + strand, within EX28DRAFT_1468at 1481.756 kb on + strand, within EX28DRAFT_1468at 1481.756 kb on + strand, within EX28DRAFT_1468at 1481.756 kb on + strand, within EX28DRAFT_1468at 1481.757 kb on - strand, within EX28DRAFT_1468at 1481.757 kb on - strand, within EX28DRAFT_1468at 1481.814 kb on + strand, within EX28DRAFT_1468at 1481.816 kb on + strand, within EX28DRAFT_1468at 1481.953 kb on + strand, within EX28DRAFT_1468at 1482.007 kb on + strand, within EX28DRAFT_1468at 1482.007 kb on + strand, within EX28DRAFT_1468at 1482.007 kb on + strand, within EX28DRAFT_1468at 1482.016 kb on - strand, within EX28DRAFT_1468at 1482.053 kb on + strand, within EX28DRAFT_1468at 1482.053 kb on + strand, within EX28DRAFT_1468at 1482.128 kb on + strand, within EX28DRAFT_1468at 1482.324 kb on + strandat 1482.435 kb on + strandat 1482.436 kb on - strandat 1482.514 kb on + strandat 1482.515 kb on - strandat 1482.540 kb on - strandat 1482.540 kb on - strandat 1482.540 kb on - strandat 1482.546 kb on - strandat 1482.546 kb on - strandat 1482.565 kb on + strandat 1482.566 kb on - strandat 1482.635 kb on - strand, within EX28DRAFT_1469at 1482.843 kb on + strand, within EX28DRAFT_1469at 1482.861 kb on - strand, within EX28DRAFT_1469at 1482.861 kb on - strand, within EX28DRAFT_1469at 1482.910 kb on - strand, within EX28DRAFT_1469at 1482.994 kb on + strand, within EX28DRAFT_1469at 1482.995 kb on - strand, within EX28DRAFT_1469at 1483.059 kb on - strand, within EX28DRAFT_1469at 1483.279 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
1,480,566 + +0.5
1,480,566 + +1.3
1,480,576 + -0.1
1,480,576 + -0.9
1,480,576 + +0.4
1,480,577 - -0.3
1,480,624 + +1.2
1,480,625 - -0.7
1,480,625 - -0.5
1,480,625 - +0.4
1,480,639 - -0.4
1,480,715 - -0.8
1,480,766 + +0.4
1,480,766 + -0.0
1,480,766 + -0.3
1,480,767 - +0.1
1,480,767 - -0.5
1,481,058 + EX28DRAFT_1467 0.40 -0.9
1,481,068 + EX28DRAFT_1467 0.42 +0.3
1,481,069 - EX28DRAFT_1467 0.42 +0.2
1,481,189 + EX28DRAFT_1467 0.64 +0.1
1,481,190 - EX28DRAFT_1467 0.64 -0.5
1,481,190 - EX28DRAFT_1467 0.64 +0.3
1,481,281 + EX28DRAFT_1467 0.80 +0.5
1,481,283 + EX28DRAFT_1467 0.81 +0.4
1,481,283 + EX28DRAFT_1467 0.81 -3.1
1,481,285 + EX28DRAFT_1467 0.81 -0.4
1,481,285 + EX28DRAFT_1467 0.81 -0.8
1,481,286 - EX28DRAFT_1467 0.81 +1.1
1,481,286 - EX28DRAFT_1467 0.81 -0.2
1,481,287 + EX28DRAFT_1467 0.81 +0.1
1,481,288 - EX28DRAFT_1467 0.82 -2.4
1,481,387 - -0.6
1,481,463 + +0.1
1,481,464 - -0.2
1,481,523 - +0.5
1,481,675 + EX28DRAFT_1468 0.19 -0.8
1,481,675 + EX28DRAFT_1468 0.19 -2.5
1,481,675 + EX28DRAFT_1468 0.19 -0.1
1,481,675 + EX28DRAFT_1468 0.19 -0.9
1,481,744 + EX28DRAFT_1468 0.28 +0.2
1,481,745 - EX28DRAFT_1468 0.28 -0.3
1,481,754 + EX28DRAFT_1468 0.29 -0.3
1,481,754 + EX28DRAFT_1468 0.29 +0.6
1,481,754 + EX28DRAFT_1468 0.29 +0.2
1,481,755 - EX28DRAFT_1468 0.29 +0.1
1,481,755 - EX28DRAFT_1468 0.29 -1.2
1,481,756 + EX28DRAFT_1468 0.29 +0.5
1,481,756 + EX28DRAFT_1468 0.29 +0.5
1,481,756 + EX28DRAFT_1468 0.29 -0.3
1,481,756 + EX28DRAFT_1468 0.29 -0.1
1,481,756 + EX28DRAFT_1468 0.29 -0.5
1,481,756 + EX28DRAFT_1468 0.29 -1.5
1,481,756 + EX28DRAFT_1468 0.29 -0.1
1,481,757 - EX28DRAFT_1468 0.29 -0.4
1,481,757 - EX28DRAFT_1468 0.29 -0.5
1,481,814 + EX28DRAFT_1468 0.36 +0.0
1,481,816 + EX28DRAFT_1468 0.36 -0.6
1,481,953 + EX28DRAFT_1468 0.53 +0.3
1,482,007 + EX28DRAFT_1468 0.59 -1.1
1,482,007 + EX28DRAFT_1468 0.59 -1.9
1,482,007 + EX28DRAFT_1468 0.59 +0.0
1,482,016 - EX28DRAFT_1468 0.60 +0.4
1,482,053 + EX28DRAFT_1468 0.65 +0.2
1,482,053 + EX28DRAFT_1468 0.65 +0.1
1,482,128 + EX28DRAFT_1468 0.74 -0.8
1,482,324 + +0.5
1,482,435 + -1.4
1,482,436 - -0.1
1,482,514 + +0.3
1,482,515 - -0.1
1,482,540 - +0.7
1,482,540 - -1.0
1,482,540 - +0.5
1,482,546 - +0.1
1,482,546 - +0.2
1,482,565 + +0.3
1,482,566 - -0.8
1,482,635 - EX28DRAFT_1469 0.12 -0.6
1,482,843 + EX28DRAFT_1469 0.43 +1.1
1,482,861 - EX28DRAFT_1469 0.46 +0.7
1,482,861 - EX28DRAFT_1469 0.46 -0.6
1,482,910 - EX28DRAFT_1469 0.53 -1.3
1,482,994 + EX28DRAFT_1469 0.65 -0.2
1,482,995 - EX28DRAFT_1469 0.65 +0.0
1,483,059 - EX28DRAFT_1469 0.75 +0.2
1,483,279 + -1.1

Or see this region's nucleotide sequence