Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1428

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1426 and EX28DRAFT_1427 overlap by 4 nucleotidesEX28DRAFT_1427 and EX28DRAFT_1428 are separated by 51 nucleotidesEX28DRAFT_1428 and EX28DRAFT_1429 are separated by 241 nucleotides EX28DRAFT_1426: EX28DRAFT_1426 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,437,509 to 1,438,273 _1426 EX28DRAFT_1427: EX28DRAFT_1427 - Acyl carrier protein phosphodiesterase, at 1,438,270 to 1,438,884 _1427 EX28DRAFT_1428: EX28DRAFT_1428 - NAD-dependent aldehyde dehydrogenases, at 1,438,936 to 1,440,435 _1428 EX28DRAFT_1429: EX28DRAFT_1429 - AraC-type DNA-binding domain-containing proteins, at 1,440,677 to 1,441,585 _1429 Position (kb) 1438 1439 1440 1441Strain fitness (log2 ratio) -2 -1 0 1at 1437.959 kb on + strand, within EX28DRAFT_1426at 1437.992 kb on - strand, within EX28DRAFT_1426at 1438.092 kb on - strand, within EX28DRAFT_1426at 1438.175 kb on - strand, within EX28DRAFT_1426at 1438.177 kb on + strand, within EX28DRAFT_1426at 1438.178 kb on - strand, within EX28DRAFT_1426at 1438.189 kb on + strand, within EX28DRAFT_1426at 1438.189 kb on + strand, within EX28DRAFT_1426at 1438.190 kb on - strand, within EX28DRAFT_1426at 1438.190 kb on - strand, within EX28DRAFT_1426at 1438.286 kb on + strandat 1438.287 kb on - strandat 1438.287 kb on - strandat 1438.287 kb on - strandat 1438.545 kb on + strand, within EX28DRAFT_1427at 1438.545 kb on + strand, within EX28DRAFT_1427at 1438.546 kb on - strand, within EX28DRAFT_1427at 1438.546 kb on - strand, within EX28DRAFT_1427at 1438.549 kb on + strand, within EX28DRAFT_1427at 1438.550 kb on - strand, within EX28DRAFT_1427at 1438.550 kb on - strand, within EX28DRAFT_1427at 1438.552 kb on - strand, within EX28DRAFT_1427at 1438.587 kb on - strand, within EX28DRAFT_1427at 1438.621 kb on + strand, within EX28DRAFT_1427at 1438.622 kb on - strand, within EX28DRAFT_1427at 1438.665 kb on + strand, within EX28DRAFT_1427at 1438.693 kb on + strand, within EX28DRAFT_1427at 1438.694 kb on - strand, within EX28DRAFT_1427at 1439.098 kb on - strand, within EX28DRAFT_1428at 1439.099 kb on + strand, within EX28DRAFT_1428at 1439.286 kb on - strand, within EX28DRAFT_1428at 1439.288 kb on + strand, within EX28DRAFT_1428at 1439.288 kb on + strand, within EX28DRAFT_1428at 1439.288 kb on + strand, within EX28DRAFT_1428at 1439.497 kb on - strand, within EX28DRAFT_1428at 1439.498 kb on + strand, within EX28DRAFT_1428at 1439.498 kb on + strand, within EX28DRAFT_1428at 1439.498 kb on + strand, within EX28DRAFT_1428at 1439.498 kb on + strand, within EX28DRAFT_1428at 1439.498 kb on + strand, within EX28DRAFT_1428at 1439.499 kb on - strand, within EX28DRAFT_1428at 1439.499 kb on - strand, within EX28DRAFT_1428at 1439.499 kb on - strand, within EX28DRAFT_1428at 1439.499 kb on - strand, within EX28DRAFT_1428at 1439.856 kb on + strand, within EX28DRAFT_1428at 1439.857 kb on - strand, within EX28DRAFT_1428at 1439.857 kb on - strand, within EX28DRAFT_1428at 1440.048 kb on - strand, within EX28DRAFT_1428at 1440.436 kb on - strandat 1440.441 kb on - strandat 1440.478 kb on + strandat 1440.479 kb on - strandat 1440.566 kb on + strandat 1440.569 kb on - strandat 1440.569 kb on - strandat 1440.598 kb on - strandat 1440.598 kb on - strandat 1440.599 kb on + strandat 1440.600 kb on - strandat 1440.612 kb on - strandat 1440.612 kb on - strandat 1440.612 kb on - strandat 1440.612 kb on - strandat 1440.704 kb on + strandat 1440.727 kb on + strandat 1440.798 kb on - strand, within EX28DRAFT_1429at 1440.877 kb on + strand, within EX28DRAFT_1429at 1440.893 kb on + strand, within EX28DRAFT_1429at 1440.893 kb on + strand, within EX28DRAFT_1429at 1440.894 kb on - strand, within EX28DRAFT_1429at 1440.967 kb on + strand, within EX28DRAFT_1429at 1441.083 kb on + strand, within EX28DRAFT_1429at 1441.084 kb on - strand, within EX28DRAFT_1429at 1441.084 kb on - strand, within EX28DRAFT_1429at 1441.351 kb on + strand, within EX28DRAFT_1429at 1441.409 kb on + strand, within EX28DRAFT_1429

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,437,959 + EX28DRAFT_1426 0.59 +1.5
1,437,992 - EX28DRAFT_1426 0.63 +1.6
1,438,092 - EX28DRAFT_1426 0.76 +0.5
1,438,175 - EX28DRAFT_1426 0.87 +0.3
1,438,177 + EX28DRAFT_1426 0.87 +0.1
1,438,178 - EX28DRAFT_1426 0.87 +0.2
1,438,189 + EX28DRAFT_1426 0.89 -0.5
1,438,189 + EX28DRAFT_1426 0.89 +0.5
1,438,190 - EX28DRAFT_1426 0.89 +0.1
1,438,190 - EX28DRAFT_1426 0.89 -1.2
1,438,286 + -1.2
1,438,287 - +0.3
1,438,287 - +0.1
1,438,287 - -1.2
1,438,545 + EX28DRAFT_1427 0.45 -0.3
1,438,545 + EX28DRAFT_1427 0.45 -0.2
1,438,546 - EX28DRAFT_1427 0.45 -0.1
1,438,546 - EX28DRAFT_1427 0.45 +0.6
1,438,549 + EX28DRAFT_1427 0.45 +1.0
1,438,550 - EX28DRAFT_1427 0.46 +0.7
1,438,550 - EX28DRAFT_1427 0.46 +0.7
1,438,552 - EX28DRAFT_1427 0.46 -0.0
1,438,587 - EX28DRAFT_1427 0.52 -2.3
1,438,621 + EX28DRAFT_1427 0.57 +0.1
1,438,622 - EX28DRAFT_1427 0.57 -0.5
1,438,665 + EX28DRAFT_1427 0.64 +0.9
1,438,693 + EX28DRAFT_1427 0.69 +0.8
1,438,694 - EX28DRAFT_1427 0.69 +1.2
1,439,098 - EX28DRAFT_1428 0.11 +0.7
1,439,099 + EX28DRAFT_1428 0.11 -0.3
1,439,286 - EX28DRAFT_1428 0.23 -0.4
1,439,288 + EX28DRAFT_1428 0.23 +0.5
1,439,288 + EX28DRAFT_1428 0.23 +0.3
1,439,288 + EX28DRAFT_1428 0.23 +0.3
1,439,497 - EX28DRAFT_1428 0.37 +0.1
1,439,498 + EX28DRAFT_1428 0.37 -1.0
1,439,498 + EX28DRAFT_1428 0.37 -1.5
1,439,498 + EX28DRAFT_1428 0.37 +0.5
1,439,498 + EX28DRAFT_1428 0.37 -0.9
1,439,498 + EX28DRAFT_1428 0.37 +1.2
1,439,499 - EX28DRAFT_1428 0.38 +0.4
1,439,499 - EX28DRAFT_1428 0.38 +0.6
1,439,499 - EX28DRAFT_1428 0.38 +0.3
1,439,499 - EX28DRAFT_1428 0.38 +1.2
1,439,856 + EX28DRAFT_1428 0.61 +0.1
1,439,857 - EX28DRAFT_1428 0.61 -0.2
1,439,857 - EX28DRAFT_1428 0.61 -0.4
1,440,048 - EX28DRAFT_1428 0.74 -0.4
1,440,436 - -0.5
1,440,441 - -0.5
1,440,478 + -0.5
1,440,479 - +0.2
1,440,566 + -0.3
1,440,569 - +0.5
1,440,569 - +0.4
1,440,598 - +0.6
1,440,598 - +0.5
1,440,599 + +0.1
1,440,600 - +0.5
1,440,612 - -1.3
1,440,612 - +0.8
1,440,612 - -2.0
1,440,612 - +0.4
1,440,704 + -0.1
1,440,727 + -0.3
1,440,798 - EX28DRAFT_1429 0.13 +0.6
1,440,877 + EX28DRAFT_1429 0.22 +0.8
1,440,893 + EX28DRAFT_1429 0.24 -0.1
1,440,893 + EX28DRAFT_1429 0.24 +0.0
1,440,894 - EX28DRAFT_1429 0.24 -0.1
1,440,967 + EX28DRAFT_1429 0.32 -0.5
1,441,083 + EX28DRAFT_1429 0.45 +0.2
1,441,084 - EX28DRAFT_1429 0.45 +0.5
1,441,084 - EX28DRAFT_1429 0.45 -0.6
1,441,351 + EX28DRAFT_1429 0.74 -0.1
1,441,409 + EX28DRAFT_1429 0.81 -0.4

Or see this region's nucleotide sequence