Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1414

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1413 and EX28DRAFT_1414 are separated by 1 nucleotidesEX28DRAFT_1414 and EX28DRAFT_1415 are separated by 2 nucleotidesEX28DRAFT_1415 and EX28DRAFT_1416 overlap by 4 nucleotides EX28DRAFT_1413: EX28DRAFT_1413 - 3-hydroxyacyl-CoA dehydrogenase PaaC, at 1,421,317 to 1,422,741 _1413 EX28DRAFT_1414: EX28DRAFT_1414 - phenylacetate degradation probable enoyl-CoA hydratase paaB, at 1,422,743 to 1,423,528 _1414 EX28DRAFT_1415: EX28DRAFT_1415 - Enoyl-CoA hydratase/carnithine racemase, at 1,423,531 to 1,424,298 _1415 EX28DRAFT_1416: EX28DRAFT_1416 - phenylacetate-CoA oxygenase/reductase, PaaK subunit, at 1,424,295 to 1,425,365 _1416 Position (kb) 1422 1423 1424Strain fitness (log2 ratio) -1 0 1at 1421.783 kb on + strand, within EX28DRAFT_1413at 1421.785 kb on + strand, within EX28DRAFT_1413at 1421.840 kb on + strand, within EX28DRAFT_1413at 1421.841 kb on - strand, within EX28DRAFT_1413at 1421.898 kb on - strand, within EX28DRAFT_1413at 1422.388 kb on - strand, within EX28DRAFT_1413at 1422.388 kb on - strand, within EX28DRAFT_1413at 1422.388 kb on - strand, within EX28DRAFT_1413at 1422.644 kb on + strandat 1422.730 kb on + strandat 1422.731 kb on - strandat 1422.731 kb on - strandat 1422.744 kb on + strandat 1422.745 kb on - strandat 1422.956 kb on - strand, within EX28DRAFT_1414at 1423.267 kb on + strand, within EX28DRAFT_1414at 1423.615 kb on - strand, within EX28DRAFT_1415at 1423.813 kb on - strand, within EX28DRAFT_1415at 1423.896 kb on + strand, within EX28DRAFT_1415at 1424.402 kb on - strand, within EX28DRAFT_1416at 1424.445 kb on - strand, within EX28DRAFT_1416

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,421,783 + EX28DRAFT_1413 0.33 +0.1
1,421,785 + EX28DRAFT_1413 0.33 +0.0
1,421,840 + EX28DRAFT_1413 0.37 +0.0
1,421,841 - EX28DRAFT_1413 0.37 +0.2
1,421,898 - EX28DRAFT_1413 0.41 -1.3
1,422,388 - EX28DRAFT_1413 0.75 -0.1
1,422,388 - EX28DRAFT_1413 0.75 -0.4
1,422,388 - EX28DRAFT_1413 0.75 -0.3
1,422,644 + +1.7
1,422,730 + +0.0
1,422,731 - +0.2
1,422,731 - -0.3
1,422,744 + +0.1
1,422,745 - -0.5
1,422,956 - EX28DRAFT_1414 0.27 -0.5
1,423,267 + EX28DRAFT_1414 0.67 -1.5
1,423,615 - EX28DRAFT_1415 0.11 +0.5
1,423,813 - EX28DRAFT_1415 0.37 -1.1
1,423,896 + EX28DRAFT_1415 0.48 +0.1
1,424,402 - EX28DRAFT_1416 0.10 +0.2
1,424,445 - EX28DRAFT_1416 0.14 +0.2

Or see this region's nucleotide sequence