Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1309 and EX28DRAFT_1310 are separated by 1 nucleotides EX28DRAFT_1310 and EX28DRAFT_1311 overlap by 4 nucleotides EX28DRAFT_1311 and EX28DRAFT_1312 are separated by 185 nucleotides EX28DRAFT_1312 and EX28DRAFT_1313 are separated by 3 nucleotides
EX28DRAFT_1309: EX28DRAFT_1309 - hypothetical protein, at 1,314,169 to 1,314,744
_1309
EX28DRAFT_1310: EX28DRAFT_1310 - phage replication protein P, at 1,314,746 to 1,315,435
_1310
EX28DRAFT_1311: EX28DRAFT_1311 - phage replication protein O, at 1,315,432 to 1,316,397
_1311
EX28DRAFT_1312: EX28DRAFT_1312 - Protein of unknown function (DUF1019), at 1,316,583 to 1,317,125
_1312
EX28DRAFT_1313: EX28DRAFT_1313 - Cro, at 1,317,129 to 1,317,329
_1313
Position (kb)
1315
1316
1317 Strain fitness (log2 ratio)
-2
-1
0
1 at 1314.437 kb on - strand, within EX28DRAFT_1309 at 1314.667 kb on + strand, within EX28DRAFT_1309 at 1314.713 kb on + strand at 1314.713 kb on + strand at 1314.714 kb on - strand at 1314.734 kb on - strand at 1314.932 kb on + strand, within EX28DRAFT_1310 at 1314.978 kb on + strand, within EX28DRAFT_1310 at 1314.979 kb on - strand, within EX28DRAFT_1310 at 1315.604 kb on + strand, within EX28DRAFT_1311 at 1315.640 kb on - strand, within EX28DRAFT_1311 at 1315.666 kb on - strand, within EX28DRAFT_1311 at 1315.784 kb on + strand, within EX28DRAFT_1311 at 1315.870 kb on - strand, within EX28DRAFT_1311 at 1315.870 kb on - strand, within EX28DRAFT_1311 at 1315.878 kb on + strand, within EX28DRAFT_1311 at 1315.879 kb on - strand, within EX28DRAFT_1311 at 1315.890 kb on + strand, within EX28DRAFT_1311 at 1315.891 kb on - strand, within EX28DRAFT_1311 at 1315.915 kb on + strand, within EX28DRAFT_1311 at 1315.975 kb on - strand, within EX28DRAFT_1311 at 1316.010 kb on + strand, within EX28DRAFT_1311 at 1316.011 kb on - strand, within EX28DRAFT_1311 at 1316.064 kb on - strand, within EX28DRAFT_1311 at 1316.191 kb on + strand, within EX28DRAFT_1311 at 1316.191 kb on + strand, within EX28DRAFT_1311 at 1316.191 kb on + strand, within EX28DRAFT_1311 at 1316.439 kb on - strand at 1316.458 kb on + strand at 1316.486 kb on + strand at 1316.661 kb on + strand, within EX28DRAFT_1312 at 1316.663 kb on + strand, within EX28DRAFT_1312 at 1316.673 kb on + strand, within EX28DRAFT_1312 at 1317.056 kb on + strand, within EX28DRAFT_1312 at 1317.056 kb on + strand, within EX28DRAFT_1312 at 1317.109 kb on + strand at 1317.152 kb on + strand, within EX28DRAFT_1313 at 1317.307 kb on + strand, within EX28DRAFT_1313 at 1317.368 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,314,437 - EX28DRAFT_1309 0.47 -0.2 1,314,667 + EX28DRAFT_1309 0.86 -1.5 1,314,713 + +0.2 1,314,713 + -0.1 1,314,714 - +0.5 1,314,734 - +1.2 1,314,932 + EX28DRAFT_1310 0.27 -0.1 1,314,978 + EX28DRAFT_1310 0.34 -0.4 1,314,979 - EX28DRAFT_1310 0.34 -0.2 1,315,604 + EX28DRAFT_1311 0.18 +0.4 1,315,640 - EX28DRAFT_1311 0.22 -0.4 1,315,666 - EX28DRAFT_1311 0.24 +0.7 1,315,784 + EX28DRAFT_1311 0.36 +0.1 1,315,870 - EX28DRAFT_1311 0.45 -0.4 1,315,870 - EX28DRAFT_1311 0.45 -1.4 1,315,878 + EX28DRAFT_1311 0.46 +0.1 1,315,879 - EX28DRAFT_1311 0.46 -2.1 1,315,890 + EX28DRAFT_1311 0.47 -0.6 1,315,891 - EX28DRAFT_1311 0.48 -1.0 1,315,915 + EX28DRAFT_1311 0.50 +0.5 1,315,975 - EX28DRAFT_1311 0.56 +0.1 1,316,010 + EX28DRAFT_1311 0.60 -0.4 1,316,011 - EX28DRAFT_1311 0.60 +0.6 1,316,064 - EX28DRAFT_1311 0.65 -0.8 1,316,191 + EX28DRAFT_1311 0.79 -0.2 1,316,191 + EX28DRAFT_1311 0.79 -0.0 1,316,191 + EX28DRAFT_1311 0.79 -0.5 1,316,439 - -0.2 1,316,458 + -1.1 1,316,486 + +0.9 1,316,661 + EX28DRAFT_1312 0.14 +1.6 1,316,663 + EX28DRAFT_1312 0.15 -0.1 1,316,673 + EX28DRAFT_1312 0.17 -0.6 1,317,056 + EX28DRAFT_1312 0.87 -0.6 1,317,056 + EX28DRAFT_1312 0.87 +1.7 1,317,109 + -0.4 1,317,152 + EX28DRAFT_1313 0.11 +0.2 1,317,307 + EX28DRAFT_1313 0.89 +0.4 1,317,368 + +0.0
Or see this region's nucleotide sequence