Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1216

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1215 and EX28DRAFT_1216 are separated by 203 nucleotidesEX28DRAFT_1216 and EX28DRAFT_1217 are separated by 156 nucleotidesEX28DRAFT_1217 and EX28DRAFT_1218 are separated by 61 nucleotides EX28DRAFT_1215: EX28DRAFT_1215 - urea ABC transporter, urea binding protein, at 1,233,466 to 1,234,737 _1215 EX28DRAFT_1216: EX28DRAFT_1216 - Methionine synthase II (cobalamin-independent), at 1,234,941 to 1,236,044 _1216 EX28DRAFT_1217: EX28DRAFT_1217 - Rhodanese-related sulfurtransferase, at 1,236,201 to 1,236,614 _1217 EX28DRAFT_1218: EX28DRAFT_1218 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,236,676 to 1,237,695 _1218 Position (kb) 1234 1235 1236 1237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1234.011 kb on - strand, within EX28DRAFT_1215at 1234.127 kb on + strand, within EX28DRAFT_1215at 1234.127 kb on + strand, within EX28DRAFT_1215at 1234.205 kb on + strand, within EX28DRAFT_1215at 1234.212 kb on - strand, within EX28DRAFT_1215at 1234.313 kb on + strand, within EX28DRAFT_1215at 1234.313 kb on + strand, within EX28DRAFT_1215at 1234.314 kb on - strand, within EX28DRAFT_1215at 1234.514 kb on - strand, within EX28DRAFT_1215at 1234.640 kb on - strandat 1234.720 kb on + strandat 1234.720 kb on + strandat 1234.725 kb on + strandat 1234.725 kb on + strandat 1234.725 kb on + strandat 1234.726 kb on - strandat 1234.845 kb on - strandat 1234.850 kb on + strandat 1234.877 kb on + strandat 1234.878 kb on - strandat 1234.878 kb on - strandat 1234.878 kb on - strandat 1234.917 kb on + strandat 1235.074 kb on + strand, within EX28DRAFT_1216at 1235.102 kb on + strand, within EX28DRAFT_1216at 1235.222 kb on - strand, within EX28DRAFT_1216at 1235.389 kb on + strand, within EX28DRAFT_1216at 1235.389 kb on + strand, within EX28DRAFT_1216at 1235.557 kb on + strand, within EX28DRAFT_1216at 1235.558 kb on - strand, within EX28DRAFT_1216at 1236.123 kb on - strandat 1236.123 kb on - strandat 1236.144 kb on + strandat 1236.352 kb on + strand, within EX28DRAFT_1217at 1236.436 kb on - strand, within EX28DRAFT_1217at 1236.478 kb on - strand, within EX28DRAFT_1217at 1236.602 kb on + strandat 1236.607 kb on + strandat 1236.649 kb on + strandat 1236.649 kb on + strandat 1236.649 kb on + strandat 1236.650 kb on - strandat 1236.650 kb on - strandat 1236.771 kb on + strandat 1236.918 kb on - strand, within EX28DRAFT_1218

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,234,011 - EX28DRAFT_1215 0.43 -1.4
1,234,127 + EX28DRAFT_1215 0.52 +0.1
1,234,127 + EX28DRAFT_1215 0.52 -0.0
1,234,205 + EX28DRAFT_1215 0.58 -3.2
1,234,212 - EX28DRAFT_1215 0.59 -0.8
1,234,313 + EX28DRAFT_1215 0.67 +2.5
1,234,313 + EX28DRAFT_1215 0.67 +0.1
1,234,314 - EX28DRAFT_1215 0.67 +0.2
1,234,514 - EX28DRAFT_1215 0.82 -1.0
1,234,640 - -0.5
1,234,720 + -2.8
1,234,720 + -0.6
1,234,725 + -0.6
1,234,725 + -0.4
1,234,725 + +0.5
1,234,726 - -1.4
1,234,845 - +0.0
1,234,850 + -0.6
1,234,877 + +0.4
1,234,878 - -0.4
1,234,878 - +0.4
1,234,878 - -0.6
1,234,917 + -0.4
1,235,074 + EX28DRAFT_1216 0.12 +0.4
1,235,102 + EX28DRAFT_1216 0.15 -0.7
1,235,222 - EX28DRAFT_1216 0.25 -0.3
1,235,389 + EX28DRAFT_1216 0.41 +0.4
1,235,389 + EX28DRAFT_1216 0.41 -0.2
1,235,557 + EX28DRAFT_1216 0.56 +0.0
1,235,558 - EX28DRAFT_1216 0.56 -0.3
1,236,123 - -1.2
1,236,123 - +0.3
1,236,144 + -2.4
1,236,352 + EX28DRAFT_1217 0.36 -0.1
1,236,436 - EX28DRAFT_1217 0.57 +1.5
1,236,478 - EX28DRAFT_1217 0.67 -0.2
1,236,602 + +0.4
1,236,607 + -0.0
1,236,649 + -2.0
1,236,649 + -0.4
1,236,649 + +1.2
1,236,650 - +0.1
1,236,650 - +1.1
1,236,771 + -0.5
1,236,918 - EX28DRAFT_1218 0.24 -0.5

Or see this region's nucleotide sequence