Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1201

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1199 and EX28DRAFT_1200 overlap by 47 nucleotidesEX28DRAFT_1200 and EX28DRAFT_1201 are separated by 84 nucleotidesEX28DRAFT_1201 and EX28DRAFT_1202 are separated by 27 nucleotidesEX28DRAFT_1202 and EX28DRAFT_1203 are separated by 177 nucleotides EX28DRAFT_1199: EX28DRAFT_1199 - Transcriptional regulator, at 1,219,750 to 1,220,628 _1199 EX28DRAFT_1200: EX28DRAFT_1200 - Acetyltransferases, at 1,220,582 to 1,221,064 _1200 EX28DRAFT_1201: EX28DRAFT_1201 - phenazine biosynthesis protein PhzF family, at 1,221,149 to 1,221,940 _1201 EX28DRAFT_1202: EX28DRAFT_1202 - phenazine biosynthesis protein PhzF family, at 1,221,968 to 1,222,756 _1202 EX28DRAFT_1203: EX28DRAFT_1203 - Arabinose efflux permease, at 1,222,934 to 1,224,130 _1203 Position (kb) 1221 1222Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1220.151 kb on - strand, within EX28DRAFT_1199at 1220.305 kb on + strand, within EX28DRAFT_1199at 1220.305 kb on + strand, within EX28DRAFT_1199at 1220.402 kb on - strand, within EX28DRAFT_1199at 1220.583 kb on + strandat 1220.584 kb on - strandat 1220.830 kb on - strand, within EX28DRAFT_1200at 1220.830 kb on - strand, within EX28DRAFT_1200at 1220.830 kb on - strand, within EX28DRAFT_1200at 1220.979 kb on + strand, within EX28DRAFT_1200at 1221.052 kb on + strandat 1221.061 kb on - strandat 1221.061 kb on - strandat 1221.085 kb on + strandat 1221.085 kb on + strandat 1221.086 kb on - strandat 1221.087 kb on + strandat 1221.095 kb on + strandat 1221.095 kb on + strandat 1221.095 kb on + strandat 1221.096 kb on - strandat 1221.124 kb on + strandat 1221.125 kb on - strandat 1221.125 kb on - strandat 1221.127 kb on + strandat 1221.127 kb on + strandat 1221.128 kb on - strandat 1221.128 kb on - strandat 1221.128 kb on - strandat 1221.132 kb on + strandat 1221.132 kb on + strandat 1221.132 kb on + strandat 1221.134 kb on + strandat 1221.175 kb on + strandat 1221.177 kb on + strandat 1221.177 kb on + strandat 1221.177 kb on + strandat 1221.177 kb on + strandat 1221.177 kb on + strandat 1221.177 kb on + strandat 1221.177 kb on + strandat 1221.178 kb on - strandat 1221.178 kb on - strandat 1221.178 kb on - strandat 1221.178 kb on - strandat 1221.178 kb on - strandat 1221.384 kb on + strand, within EX28DRAFT_1201at 1221.492 kb on + strand, within EX28DRAFT_1201at 1221.492 kb on + strand, within EX28DRAFT_1201at 1221.492 kb on + strand, within EX28DRAFT_1201at 1221.493 kb on - strand, within EX28DRAFT_1201at 1221.734 kb on - strand, within EX28DRAFT_1201at 1221.811 kb on + strand, within EX28DRAFT_1201at 1221.869 kb on + strandat 1221.870 kb on - strandat 1221.997 kb on - strandat 1222.049 kb on + strand, within EX28DRAFT_1202at 1222.049 kb on + strand, within EX28DRAFT_1202at 1222.204 kb on - strand, within EX28DRAFT_1202at 1222.237 kb on + strand, within EX28DRAFT_1202at 1222.237 kb on + strand, within EX28DRAFT_1202at 1222.237 kb on + strand, within EX28DRAFT_1202at 1222.578 kb on - strand, within EX28DRAFT_1202at 1222.731 kb on - strandat 1222.731 kb on - strandat 1222.791 kb on + strandat 1222.793 kb on + strandat 1222.793 kb on + strandat 1222.830 kb on + strandat 1222.888 kb on + strandat 1222.888 kb on + strandat 1222.888 kb on + strandat 1222.933 kb on + strandat 1222.933 kb on + strandat 1222.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,220,151 - EX28DRAFT_1199 0.46 +1.0
1,220,305 + EX28DRAFT_1199 0.63 +0.1
1,220,305 + EX28DRAFT_1199 0.63 -1.3
1,220,402 - EX28DRAFT_1199 0.74 -0.2
1,220,583 + -0.6
1,220,584 - -0.7
1,220,830 - EX28DRAFT_1200 0.51 -0.8
1,220,830 - EX28DRAFT_1200 0.51 -0.5
1,220,830 - EX28DRAFT_1200 0.51 +0.9
1,220,979 + EX28DRAFT_1200 0.82 -0.9
1,221,052 + +0.4
1,221,061 - -0.4
1,221,061 - +1.0
1,221,085 + +0.5
1,221,085 + -1.6
1,221,086 - -2.4
1,221,087 + +1.2
1,221,095 + -0.0
1,221,095 + -0.1
1,221,095 + -0.1
1,221,096 - -0.6
1,221,124 + +0.9
1,221,125 - -2.9
1,221,125 - +1.7
1,221,127 + -0.1
1,221,127 + +0.5
1,221,128 - -1.3
1,221,128 - -0.6
1,221,128 - +0.8
1,221,132 + -0.0
1,221,132 + +1.1
1,221,132 + -0.8
1,221,134 + -0.2
1,221,175 + -1.2
1,221,177 + -0.5
1,221,177 + -2.9
1,221,177 + -0.0
1,221,177 + -0.2
1,221,177 + -0.1
1,221,177 + -0.0
1,221,177 + -0.9
1,221,178 - +1.6
1,221,178 - +0.1
1,221,178 - +0.1
1,221,178 - -0.3
1,221,178 - -4.7
1,221,384 + EX28DRAFT_1201 0.30 +0.3
1,221,492 + EX28DRAFT_1201 0.43 -0.2
1,221,492 + EX28DRAFT_1201 0.43 +1.1
1,221,492 + EX28DRAFT_1201 0.43 -0.6
1,221,493 - EX28DRAFT_1201 0.43 +0.3
1,221,734 - EX28DRAFT_1201 0.74 +0.3
1,221,811 + EX28DRAFT_1201 0.84 -1.6
1,221,869 + -0.0
1,221,870 - -0.0
1,221,997 - +1.1
1,222,049 + EX28DRAFT_1202 0.10 -0.5
1,222,049 + EX28DRAFT_1202 0.10 +0.4
1,222,204 - EX28DRAFT_1202 0.30 +0.5
1,222,237 + EX28DRAFT_1202 0.34 -4.1
1,222,237 + EX28DRAFT_1202 0.34 +0.9
1,222,237 + EX28DRAFT_1202 0.34 +0.1
1,222,578 - EX28DRAFT_1202 0.77 -0.8
1,222,731 - +0.6
1,222,731 - -1.4
1,222,791 + -0.2
1,222,793 + -1.0
1,222,793 + +1.3
1,222,830 + +0.8
1,222,888 + +0.4
1,222,888 + +0.4
1,222,888 + -0.1
1,222,933 + +0.8
1,222,933 + +0.6
1,222,934 - -1.0

Or see this region's nucleotide sequence