Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1184

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1183 and EX28DRAFT_1184 are separated by 135 nucleotidesEX28DRAFT_1184 and EX28DRAFT_1185 overlap by 4 nucleotidesEX28DRAFT_1185 and EX28DRAFT_1186 are separated by 44 nucleotides EX28DRAFT_1183: EX28DRAFT_1183 - Cytochrome c biogenesis protein, at 1,203,150 to 1,204,340 _1183 EX28DRAFT_1184: EX28DRAFT_1184 - Signal transduction histidine kinase, at 1,204,476 to 1,205,774 _1184 EX28DRAFT_1185: EX28DRAFT_1185 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,205,771 to 1,206,511 _1185 EX28DRAFT_1186: EX28DRAFT_1186 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,206,556 to 1,207,551 _1186 Position (kb) 1204 1205 1206Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1203.729 kb on + strand, within EX28DRAFT_1183at 1203.729 kb on + strand, within EX28DRAFT_1183at 1203.730 kb on - strand, within EX28DRAFT_1183at 1203.730 kb on - strand, within EX28DRAFT_1183at 1203.825 kb on + strand, within EX28DRAFT_1183at 1203.915 kb on - strand, within EX28DRAFT_1183at 1204.032 kb on + strand, within EX28DRAFT_1183at 1204.032 kb on + strand, within EX28DRAFT_1183at 1204.032 kb on + strand, within EX28DRAFT_1183at 1204.033 kb on - strand, within EX28DRAFT_1183at 1204.033 kb on - strand, within EX28DRAFT_1183at 1204.033 kb on - strand, within EX28DRAFT_1183at 1204.034 kb on + strand, within EX28DRAFT_1183at 1204.035 kb on - strand, within EX28DRAFT_1183at 1204.065 kb on - strand, within EX28DRAFT_1183at 1204.286 kb on + strandat 1204.287 kb on - strandat 1204.306 kb on - strandat 1204.329 kb on + strandat 1204.340 kb on + strandat 1204.340 kb on + strandat 1204.354 kb on + strandat 1204.354 kb on + strandat 1204.355 kb on - strandat 1204.355 kb on - strandat 1204.383 kb on - strandat 1204.409 kb on + strandat 1204.410 kb on - strandat 1204.461 kb on + strandat 1204.462 kb on - strandat 1204.462 kb on - strandat 1204.462 kb on - strandat 1204.642 kb on - strand, within EX28DRAFT_1184at 1204.642 kb on - strand, within EX28DRAFT_1184at 1204.755 kb on - strand, within EX28DRAFT_1184at 1204.755 kb on - strand, within EX28DRAFT_1184at 1204.819 kb on - strand, within EX28DRAFT_1184at 1204.949 kb on - strand, within EX28DRAFT_1184at 1205.113 kb on + strand, within EX28DRAFT_1184at 1205.114 kb on - strand, within EX28DRAFT_1184at 1205.444 kb on - strand, within EX28DRAFT_1184at 1205.536 kb on + strand, within EX28DRAFT_1184at 1205.806 kb on + strandat 1205.814 kb on + strandat 1205.839 kb on + strandat 1205.841 kb on + strandat 1206.050 kb on + strand, within EX28DRAFT_1185at 1206.204 kb on + strand, within EX28DRAFT_1185at 1206.204 kb on + strand, within EX28DRAFT_1185at 1206.204 kb on + strand, within EX28DRAFT_1185at 1206.205 kb on - strand, within EX28DRAFT_1185at 1206.205 kb on - strand, within EX28DRAFT_1185at 1206.205 kb on - strand, within EX28DRAFT_1185at 1206.205 kb on - strand, within EX28DRAFT_1185at 1206.288 kb on + strand, within EX28DRAFT_1185at 1206.288 kb on + strand, within EX28DRAFT_1185at 1206.289 kb on - strand, within EX28DRAFT_1185at 1206.289 kb on - strand, within EX28DRAFT_1185at 1206.303 kb on - strand, within EX28DRAFT_1185at 1206.320 kb on - strand, within EX28DRAFT_1185at 1206.367 kb on + strand, within EX28DRAFT_1185at 1206.436 kb on + strand, within EX28DRAFT_1185at 1206.436 kb on + strand, within EX28DRAFT_1185at 1206.493 kb on + strandat 1206.502 kb on + strandat 1206.502 kb on + strandat 1206.502 kb on + strandat 1206.547 kb on + strandat 1206.547 kb on + strandat 1206.548 kb on - strandat 1206.653 kb on + strandat 1206.773 kb on + strand, within EX28DRAFT_1186

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,203,729 + EX28DRAFT_1183 0.49 -0.2
1,203,729 + EX28DRAFT_1183 0.49 +0.4
1,203,730 - EX28DRAFT_1183 0.49 +1.0
1,203,730 - EX28DRAFT_1183 0.49 -0.6
1,203,825 + EX28DRAFT_1183 0.57 -0.7
1,203,915 - EX28DRAFT_1183 0.64 +0.5
1,204,032 + EX28DRAFT_1183 0.74 -0.5
1,204,032 + EX28DRAFT_1183 0.74 +0.5
1,204,032 + EX28DRAFT_1183 0.74 -1.1
1,204,033 - EX28DRAFT_1183 0.74 +0.6
1,204,033 - EX28DRAFT_1183 0.74 +0.3
1,204,033 - EX28DRAFT_1183 0.74 -0.4
1,204,034 + EX28DRAFT_1183 0.74 +0.1
1,204,035 - EX28DRAFT_1183 0.74 +0.7
1,204,065 - EX28DRAFT_1183 0.77 +0.0
1,204,286 + -0.6
1,204,287 - -0.8
1,204,306 - +0.1
1,204,329 + -0.3
1,204,340 + +0.7
1,204,340 + -0.5
1,204,354 + +0.1
1,204,354 + +0.6
1,204,355 - -0.2
1,204,355 - -0.7
1,204,383 - +0.4
1,204,409 + +1.4
1,204,410 - -3.2
1,204,461 + -0.6
1,204,462 - -1.0
1,204,462 - -0.1
1,204,462 - +0.1
1,204,642 - EX28DRAFT_1184 0.13 -0.4
1,204,642 - EX28DRAFT_1184 0.13 -0.4
1,204,755 - EX28DRAFT_1184 0.21 -0.0
1,204,755 - EX28DRAFT_1184 0.21 -3.2
1,204,819 - EX28DRAFT_1184 0.26 +1.8
1,204,949 - EX28DRAFT_1184 0.36 -0.3
1,205,113 + EX28DRAFT_1184 0.49 +0.2
1,205,114 - EX28DRAFT_1184 0.49 -0.5
1,205,444 - EX28DRAFT_1184 0.75 +0.2
1,205,536 + EX28DRAFT_1184 0.82 -1.2
1,205,806 + +0.1
1,205,814 + +0.0
1,205,839 + -0.0
1,205,841 + +0.4
1,206,050 + EX28DRAFT_1185 0.38 -0.3
1,206,204 + EX28DRAFT_1185 0.58 +0.3
1,206,204 + EX28DRAFT_1185 0.58 +0.3
1,206,204 + EX28DRAFT_1185 0.58 -1.0
1,206,205 - EX28DRAFT_1185 0.59 -0.4
1,206,205 - EX28DRAFT_1185 0.59 -0.1
1,206,205 - EX28DRAFT_1185 0.59 +0.6
1,206,205 - EX28DRAFT_1185 0.59 -0.2
1,206,288 + EX28DRAFT_1185 0.70 -0.2
1,206,288 + EX28DRAFT_1185 0.70 +0.2
1,206,289 - EX28DRAFT_1185 0.70 +0.6
1,206,289 - EX28DRAFT_1185 0.70 -0.5
1,206,303 - EX28DRAFT_1185 0.72 -0.8
1,206,320 - EX28DRAFT_1185 0.74 +0.4
1,206,367 + EX28DRAFT_1185 0.80 +0.4
1,206,436 + EX28DRAFT_1185 0.90 +1.9
1,206,436 + EX28DRAFT_1185 0.90 +0.2
1,206,493 + -0.9
1,206,502 + -1.6
1,206,502 + +0.4
1,206,502 + +0.0
1,206,547 + +1.8
1,206,547 + -0.4
1,206,548 - +1.0
1,206,653 + +0.3
1,206,773 + EX28DRAFT_1186 0.22 -0.7

Or see this region's nucleotide sequence