Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1061

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1060 and EX28DRAFT_1061 are separated by 45 nucleotidesEX28DRAFT_1061 and EX28DRAFT_1062 are separated by 32 nucleotides EX28DRAFT_1060: EX28DRAFT_1060 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase, at 1,070,292 to 1,071,293 _1060 EX28DRAFT_1061: EX28DRAFT_1061 - Malic enzyme, at 1,071,339 to 1,073,024 _1061 EX28DRAFT_1062: EX28DRAFT_1062 - Predicted permeases, at 1,073,057 to 1,074,004 _1062 Position (kb) 1071 1072 1073 1074Strain fitness (log2 ratio) -2 -1 0 1 2at 1070.967 kb on + strand, within EX28DRAFT_1060at 1070.967 kb on + strand, within EX28DRAFT_1060at 1070.968 kb on - strand, within EX28DRAFT_1060at 1070.968 kb on - strand, within EX28DRAFT_1060at 1070.968 kb on - strand, within EX28DRAFT_1060at 1071.050 kb on + strand, within EX28DRAFT_1060at 1071.156 kb on + strand, within EX28DRAFT_1060at 1071.156 kb on + strand, within EX28DRAFT_1060at 1071.156 kb on + strand, within EX28DRAFT_1060at 1071.156 kb on + strand, within EX28DRAFT_1060at 1071.157 kb on - strand, within EX28DRAFT_1060at 1071.157 kb on - strand, within EX28DRAFT_1060at 1071.157 kb on - strand, within EX28DRAFT_1060at 1071.158 kb on + strand, within EX28DRAFT_1060at 1071.158 kb on + strand, within EX28DRAFT_1060at 1071.158 kb on + strand, within EX28DRAFT_1060at 1071.158 kb on + strand, within EX28DRAFT_1060at 1071.158 kb on + strand, within EX28DRAFT_1060at 1071.158 kb on + strand, within EX28DRAFT_1060at 1071.159 kb on - strand, within EX28DRAFT_1060at 1071.159 kb on - strand, within EX28DRAFT_1060at 1071.159 kb on - strand, within EX28DRAFT_1060at 1071.159 kb on - strand, within EX28DRAFT_1060at 1071.159 kb on - strand, within EX28DRAFT_1060at 1071.340 kb on + strandat 1071.367 kb on + strandat 1071.395 kb on + strandat 1071.642 kb on - strand, within EX28DRAFT_1061at 1071.644 kb on - strand, within EX28DRAFT_1061at 1071.644 kb on - strand, within EX28DRAFT_1061at 1071.644 kb on - strand, within EX28DRAFT_1061at 1071.653 kb on + strand, within EX28DRAFT_1061at 1071.653 kb on + strand, within EX28DRAFT_1061at 1071.654 kb on - strand, within EX28DRAFT_1061at 1071.671 kb on - strand, within EX28DRAFT_1061at 1071.887 kb on + strand, within EX28DRAFT_1061at 1071.924 kb on - strand, within EX28DRAFT_1061at 1072.227 kb on - strand, within EX28DRAFT_1061at 1072.353 kb on - strand, within EX28DRAFT_1061at 1072.353 kb on - strand, within EX28DRAFT_1061at 1072.409 kb on - strand, within EX28DRAFT_1061at 1072.409 kb on - strand, within EX28DRAFT_1061at 1072.541 kb on + strand, within EX28DRAFT_1061at 1072.560 kb on + strand, within EX28DRAFT_1061at 1072.566 kb on - strand, within EX28DRAFT_1061at 1072.726 kb on + strand, within EX28DRAFT_1061at 1072.726 kb on + strand, within EX28DRAFT_1061at 1072.727 kb on - strand, within EX28DRAFT_1061at 1072.836 kb on - strand, within EX28DRAFT_1061at 1072.956 kb on - strandat 1072.994 kb on - strandat 1073.141 kb on - strandat 1073.142 kb on + strandat 1073.142 kb on + strandat 1073.220 kb on - strand, within EX28DRAFT_1062at 1073.293 kb on + strand, within EX28DRAFT_1062at 1073.294 kb on - strand, within EX28DRAFT_1062at 1073.297 kb on - strand, within EX28DRAFT_1062at 1073.410 kb on + strand, within EX28DRAFT_1062at 1073.410 kb on + strand, within EX28DRAFT_1062at 1073.606 kb on - strand, within EX28DRAFT_1062at 1073.676 kb on + strand, within EX28DRAFT_1062at 1073.756 kb on - strand, within EX28DRAFT_1062at 1073.769 kb on - strand, within EX28DRAFT_1062at 1073.769 kb on - strand, within EX28DRAFT_1062

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,070,967 + EX28DRAFT_1060 0.67 +0.0
1,070,967 + EX28DRAFT_1060 0.67 -0.5
1,070,968 - EX28DRAFT_1060 0.67 -0.8
1,070,968 - EX28DRAFT_1060 0.67 -0.4
1,070,968 - EX28DRAFT_1060 0.67 +0.1
1,071,050 + EX28DRAFT_1060 0.76 +0.2
1,071,156 + EX28DRAFT_1060 0.86 -0.0
1,071,156 + EX28DRAFT_1060 0.86 +0.4
1,071,156 + EX28DRAFT_1060 0.86 +0.7
1,071,156 + EX28DRAFT_1060 0.86 +0.5
1,071,157 - EX28DRAFT_1060 0.86 +0.3
1,071,157 - EX28DRAFT_1060 0.86 -0.1
1,071,157 - EX28DRAFT_1060 0.86 +0.5
1,071,158 + EX28DRAFT_1060 0.86 -0.9
1,071,158 + EX28DRAFT_1060 0.86 -0.3
1,071,158 + EX28DRAFT_1060 0.86 +0.4
1,071,158 + EX28DRAFT_1060 0.86 +0.1
1,071,158 + EX28DRAFT_1060 0.86 -0.1
1,071,158 + EX28DRAFT_1060 0.86 +0.9
1,071,159 - EX28DRAFT_1060 0.87 +0.1
1,071,159 - EX28DRAFT_1060 0.87 -0.7
1,071,159 - EX28DRAFT_1060 0.87 +2.3
1,071,159 - EX28DRAFT_1060 0.87 -0.0
1,071,159 - EX28DRAFT_1060 0.87 -0.2
1,071,340 + -0.2
1,071,367 + -0.5
1,071,395 + -1.0
1,071,642 - EX28DRAFT_1061 0.18 -0.5
1,071,644 - EX28DRAFT_1061 0.18 +0.2
1,071,644 - EX28DRAFT_1061 0.18 +0.0
1,071,644 - EX28DRAFT_1061 0.18 -0.3
1,071,653 + EX28DRAFT_1061 0.19 -0.2
1,071,653 + EX28DRAFT_1061 0.19 +0.5
1,071,654 - EX28DRAFT_1061 0.19 +0.1
1,071,671 - EX28DRAFT_1061 0.20 +1.6
1,071,887 + EX28DRAFT_1061 0.33 -1.6
1,071,924 - EX28DRAFT_1061 0.35 -0.1
1,072,227 - EX28DRAFT_1061 0.53 -0.7
1,072,353 - EX28DRAFT_1061 0.60 -0.5
1,072,353 - EX28DRAFT_1061 0.60 +0.3
1,072,409 - EX28DRAFT_1061 0.63 -1.2
1,072,409 - EX28DRAFT_1061 0.63 -1.0
1,072,541 + EX28DRAFT_1061 0.71 -0.5
1,072,560 + EX28DRAFT_1061 0.72 +0.3
1,072,566 - EX28DRAFT_1061 0.73 -0.1
1,072,726 + EX28DRAFT_1061 0.82 -0.6
1,072,726 + EX28DRAFT_1061 0.82 -0.2
1,072,727 - EX28DRAFT_1061 0.82 +0.4
1,072,836 - EX28DRAFT_1061 0.89 +0.5
1,072,956 - -0.3
1,072,994 - -1.1
1,073,141 - -0.1
1,073,142 + -0.0
1,073,142 + -0.5
1,073,220 - EX28DRAFT_1062 0.17 +0.7
1,073,293 + EX28DRAFT_1062 0.25 +0.3
1,073,294 - EX28DRAFT_1062 0.25 +0.9
1,073,297 - EX28DRAFT_1062 0.25 +1.1
1,073,410 + EX28DRAFT_1062 0.37 +1.7
1,073,410 + EX28DRAFT_1062 0.37 -0.9
1,073,606 - EX28DRAFT_1062 0.58 -2.5
1,073,676 + EX28DRAFT_1062 0.65 -0.5
1,073,756 - EX28DRAFT_1062 0.74 +0.1
1,073,769 - EX28DRAFT_1062 0.75 +0.7
1,073,769 - EX28DRAFT_1062 0.75 -1.1

Or see this region's nucleotide sequence