Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1042

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1041 and EX28DRAFT_1042 are separated by 254 nucleotidesEX28DRAFT_1042 and EX28DRAFT_1043 are separated by 119 nucleotides EX28DRAFT_1041: EX28DRAFT_1041 - Putative NADP-dependent oxidoreductases, at 1,050,358 to 1,051,398 _1041 EX28DRAFT_1042: EX28DRAFT_1042 - Transcriptional regulators, at 1,051,653 to 1,052,321 _1042 EX28DRAFT_1043: EX28DRAFT_1043 - TonB-dependent siderophore receptor, at 1,052,441 to 1,054,555 _1043 Position (kb) 1051 1052 1053Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1050.670 kb on + strand, within EX28DRAFT_1041at 1050.670 kb on + strand, within EX28DRAFT_1041at 1050.671 kb on - strand, within EX28DRAFT_1041at 1050.724 kb on - strand, within EX28DRAFT_1041at 1050.770 kb on - strand, within EX28DRAFT_1041at 1050.771 kb on + strand, within EX28DRAFT_1041at 1051.021 kb on + strand, within EX28DRAFT_1041at 1051.022 kb on - strand, within EX28DRAFT_1041at 1051.075 kb on - strand, within EX28DRAFT_1041at 1051.114 kb on + strand, within EX28DRAFT_1041at 1051.115 kb on - strand, within EX28DRAFT_1041at 1051.191 kb on + strand, within EX28DRAFT_1041at 1051.192 kb on - strand, within EX28DRAFT_1041at 1051.204 kb on - strand, within EX28DRAFT_1041at 1051.220 kb on - strand, within EX28DRAFT_1041at 1051.353 kb on + strandat 1051.392 kb on + strandat 1051.393 kb on - strandat 1051.406 kb on + strandat 1051.407 kb on - strandat 1051.430 kb on + strandat 1051.430 kb on + strandat 1051.431 kb on - strandat 1051.431 kb on - strandat 1051.431 kb on - strandat 1051.449 kb on + strandat 1051.449 kb on + strandat 1051.450 kb on - strandat 1051.450 kb on - strandat 1051.450 kb on - strandat 1051.459 kb on - strandat 1051.462 kb on + strandat 1051.547 kb on + strandat 1051.548 kb on - strandat 1051.548 kb on - strandat 1051.628 kb on + strandat 1051.698 kb on - strandat 1051.769 kb on + strand, within EX28DRAFT_1042at 1051.792 kb on + strand, within EX28DRAFT_1042at 1051.802 kb on + strand, within EX28DRAFT_1042at 1051.906 kb on - strand, within EX28DRAFT_1042at 1052.082 kb on - strand, within EX28DRAFT_1042at 1052.202 kb on + strand, within EX28DRAFT_1042at 1052.202 kb on + strand, within EX28DRAFT_1042at 1052.202 kb on + strand, within EX28DRAFT_1042at 1052.202 kb on + strand, within EX28DRAFT_1042at 1052.203 kb on - strand, within EX28DRAFT_1042at 1052.208 kb on + strand, within EX28DRAFT_1042at 1052.270 kb on + strandat 1052.299 kb on + strandat 1052.319 kb on + strandat 1052.319 kb on + strandat 1052.327 kb on + strandat 1052.356 kb on + strandat 1052.357 kb on - strandat 1052.375 kb on + strandat 1052.390 kb on + strandat 1052.390 kb on + strandat 1052.391 kb on - strandat 1052.419 kb on + strandat 1052.419 kb on + strandat 1052.502 kb on + strandat 1052.601 kb on + strandat 1052.638 kb on + strandat 1052.639 kb on - strandat 1052.641 kb on - strandat 1052.689 kb on + strand, within EX28DRAFT_1043at 1052.689 kb on + strand, within EX28DRAFT_1043at 1052.689 kb on + strand, within EX28DRAFT_1043at 1052.689 kb on + strand, within EX28DRAFT_1043at 1052.691 kb on + strand, within EX28DRAFT_1043at 1052.692 kb on - strand, within EX28DRAFT_1043at 1052.789 kb on - strand, within EX28DRAFT_1043at 1052.835 kb on + strand, within EX28DRAFT_1043at 1052.836 kb on - strand, within EX28DRAFT_1043at 1052.927 kb on - strand, within EX28DRAFT_1043at 1053.153 kb on + strand, within EX28DRAFT_1043at 1053.213 kb on + strand, within EX28DRAFT_1043at 1053.256 kb on - strand, within EX28DRAFT_1043

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,050,670 + EX28DRAFT_1041 0.30 -0.7
1,050,670 + EX28DRAFT_1041 0.30 +0.2
1,050,671 - EX28DRAFT_1041 0.30 -0.4
1,050,724 - EX28DRAFT_1041 0.35 -2.7
1,050,770 - EX28DRAFT_1041 0.40 -0.4
1,050,771 + EX28DRAFT_1041 0.40 +1.5
1,051,021 + EX28DRAFT_1041 0.64 -0.7
1,051,022 - EX28DRAFT_1041 0.64 -0.1
1,051,075 - EX28DRAFT_1041 0.69 +0.3
1,051,114 + EX28DRAFT_1041 0.73 +1.4
1,051,115 - EX28DRAFT_1041 0.73 +0.7
1,051,191 + EX28DRAFT_1041 0.80 +2.8
1,051,192 - EX28DRAFT_1041 0.80 +0.4
1,051,204 - EX28DRAFT_1041 0.81 -0.0
1,051,220 - EX28DRAFT_1041 0.83 -0.0
1,051,353 + -0.6
1,051,392 + -0.5
1,051,393 - +0.4
1,051,406 + +0.2
1,051,407 - -0.0
1,051,430 + +0.3
1,051,430 + -0.3
1,051,431 - +0.4
1,051,431 - +0.1
1,051,431 - -0.1
1,051,449 + -0.5
1,051,449 + -1.3
1,051,450 - -0.2
1,051,450 - -0.2
1,051,450 - +0.5
1,051,459 - +0.4
1,051,462 + -0.5
1,051,547 + -0.2
1,051,548 - -0.4
1,051,548 - +0.8
1,051,628 + -0.3
1,051,698 - +0.6
1,051,769 + EX28DRAFT_1042 0.17 +0.9
1,051,792 + EX28DRAFT_1042 0.21 +0.7
1,051,802 + EX28DRAFT_1042 0.22 -0.4
1,051,906 - EX28DRAFT_1042 0.38 -0.4
1,052,082 - EX28DRAFT_1042 0.64 +0.5
1,052,202 + EX28DRAFT_1042 0.82 +2.5
1,052,202 + EX28DRAFT_1042 0.82 +2.1
1,052,202 + EX28DRAFT_1042 0.82 -0.5
1,052,202 + EX28DRAFT_1042 0.82 +1.5
1,052,203 - EX28DRAFT_1042 0.82 -0.0
1,052,208 + EX28DRAFT_1042 0.83 -1.3
1,052,270 + +0.4
1,052,299 + +2.5
1,052,319 + +1.1
1,052,319 + +0.6
1,052,327 + +0.5
1,052,356 + +1.5
1,052,357 - -0.5
1,052,375 + +0.2
1,052,390 + +0.3
1,052,390 + -0.2
1,052,391 - -0.7
1,052,419 + +0.9
1,052,419 + +0.2
1,052,502 + -0.1
1,052,601 + -0.1
1,052,638 + +0.4
1,052,639 - -0.2
1,052,641 - -0.5
1,052,689 + EX28DRAFT_1043 0.12 -0.3
1,052,689 + EX28DRAFT_1043 0.12 -0.5
1,052,689 + EX28DRAFT_1043 0.12 -2.1
1,052,689 + EX28DRAFT_1043 0.12 -0.8
1,052,691 + EX28DRAFT_1043 0.12 -0.9
1,052,692 - EX28DRAFT_1043 0.12 -0.1
1,052,789 - EX28DRAFT_1043 0.16 -0.5
1,052,835 + EX28DRAFT_1043 0.19 +2.2
1,052,836 - EX28DRAFT_1043 0.19 +0.6
1,052,927 - EX28DRAFT_1043 0.23 +0.1
1,053,153 + EX28DRAFT_1043 0.34 -0.1
1,053,213 + EX28DRAFT_1043 0.37 -0.2
1,053,256 - EX28DRAFT_1043 0.39 +0.5

Or see this region's nucleotide sequence