Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1041 and EX28DRAFT_1042 are separated by 254 nucleotides EX28DRAFT_1042 and EX28DRAFT_1043 are separated by 119 nucleotides
EX28DRAFT_1041: EX28DRAFT_1041 - Putative NADP-dependent oxidoreductases, at 1,050,358 to 1,051,398
_1041
EX28DRAFT_1042: EX28DRAFT_1042 - Transcriptional regulators, at 1,051,653 to 1,052,321
_1042
EX28DRAFT_1043: EX28DRAFT_1043 - TonB-dependent siderophore receptor, at 1,052,441 to 1,054,555
_1043
Position (kb)
1051
1052
1053 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1050.670 kb on + strand, within EX28DRAFT_1041 at 1050.670 kb on + strand, within EX28DRAFT_1041 at 1050.671 kb on - strand, within EX28DRAFT_1041 at 1050.724 kb on - strand, within EX28DRAFT_1041 at 1050.770 kb on - strand, within EX28DRAFT_1041 at 1050.771 kb on + strand, within EX28DRAFT_1041 at 1051.021 kb on + strand, within EX28DRAFT_1041 at 1051.022 kb on - strand, within EX28DRAFT_1041 at 1051.075 kb on - strand, within EX28DRAFT_1041 at 1051.114 kb on + strand, within EX28DRAFT_1041 at 1051.115 kb on - strand, within EX28DRAFT_1041 at 1051.191 kb on + strand, within EX28DRAFT_1041 at 1051.192 kb on - strand, within EX28DRAFT_1041 at 1051.204 kb on - strand, within EX28DRAFT_1041 at 1051.220 kb on - strand, within EX28DRAFT_1041 at 1051.353 kb on + strand at 1051.392 kb on + strand at 1051.393 kb on - strand at 1051.406 kb on + strand at 1051.407 kb on - strand at 1051.430 kb on + strand at 1051.430 kb on + strand at 1051.431 kb on - strand at 1051.431 kb on - strand at 1051.431 kb on - strand at 1051.449 kb on + strand at 1051.449 kb on + strand at 1051.450 kb on - strand at 1051.450 kb on - strand at 1051.450 kb on - strand at 1051.459 kb on - strand at 1051.462 kb on + strand at 1051.547 kb on + strand at 1051.548 kb on - strand at 1051.548 kb on - strand at 1051.628 kb on + strand at 1051.698 kb on - strand at 1051.769 kb on + strand, within EX28DRAFT_1042 at 1051.792 kb on + strand, within EX28DRAFT_1042 at 1051.802 kb on + strand, within EX28DRAFT_1042 at 1051.906 kb on - strand, within EX28DRAFT_1042 at 1052.082 kb on - strand, within EX28DRAFT_1042 at 1052.202 kb on + strand, within EX28DRAFT_1042 at 1052.202 kb on + strand, within EX28DRAFT_1042 at 1052.202 kb on + strand, within EX28DRAFT_1042 at 1052.202 kb on + strand, within EX28DRAFT_1042 at 1052.203 kb on - strand, within EX28DRAFT_1042 at 1052.208 kb on + strand, within EX28DRAFT_1042 at 1052.270 kb on + strand at 1052.299 kb on + strand at 1052.319 kb on + strand at 1052.319 kb on + strand at 1052.327 kb on + strand at 1052.356 kb on + strand at 1052.357 kb on - strand at 1052.375 kb on + strand at 1052.390 kb on + strand at 1052.390 kb on + strand at 1052.391 kb on - strand at 1052.419 kb on + strand at 1052.419 kb on + strand at 1052.502 kb on + strand at 1052.601 kb on + strand at 1052.638 kb on + strand at 1052.639 kb on - strand at 1052.641 kb on - strand at 1052.689 kb on + strand, within EX28DRAFT_1043 at 1052.689 kb on + strand, within EX28DRAFT_1043 at 1052.689 kb on + strand, within EX28DRAFT_1043 at 1052.689 kb on + strand, within EX28DRAFT_1043 at 1052.691 kb on + strand, within EX28DRAFT_1043 at 1052.692 kb on - strand, within EX28DRAFT_1043 at 1052.789 kb on - strand, within EX28DRAFT_1043 at 1052.835 kb on + strand, within EX28DRAFT_1043 at 1052.836 kb on - strand, within EX28DRAFT_1043 at 1052.927 kb on - strand, within EX28DRAFT_1043 at 1053.153 kb on + strand, within EX28DRAFT_1043 at 1053.213 kb on + strand, within EX28DRAFT_1043 at 1053.256 kb on - strand, within EX28DRAFT_1043
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,050,670 + EX28DRAFT_1041 0.30 -0.7 1,050,670 + EX28DRAFT_1041 0.30 +0.2 1,050,671 - EX28DRAFT_1041 0.30 -0.4 1,050,724 - EX28DRAFT_1041 0.35 -2.7 1,050,770 - EX28DRAFT_1041 0.40 -0.4 1,050,771 + EX28DRAFT_1041 0.40 +1.5 1,051,021 + EX28DRAFT_1041 0.64 -0.7 1,051,022 - EX28DRAFT_1041 0.64 -0.1 1,051,075 - EX28DRAFT_1041 0.69 +0.3 1,051,114 + EX28DRAFT_1041 0.73 +1.4 1,051,115 - EX28DRAFT_1041 0.73 +0.7 1,051,191 + EX28DRAFT_1041 0.80 +2.8 1,051,192 - EX28DRAFT_1041 0.80 +0.4 1,051,204 - EX28DRAFT_1041 0.81 -0.0 1,051,220 - EX28DRAFT_1041 0.83 -0.0 1,051,353 + -0.6 1,051,392 + -0.5 1,051,393 - +0.4 1,051,406 + +0.2 1,051,407 - -0.0 1,051,430 + +0.3 1,051,430 + -0.3 1,051,431 - +0.4 1,051,431 - +0.1 1,051,431 - -0.1 1,051,449 + -0.5 1,051,449 + -1.3 1,051,450 - -0.2 1,051,450 - -0.2 1,051,450 - +0.5 1,051,459 - +0.4 1,051,462 + -0.5 1,051,547 + -0.2 1,051,548 - -0.4 1,051,548 - +0.8 1,051,628 + -0.3 1,051,698 - +0.6 1,051,769 + EX28DRAFT_1042 0.17 +0.9 1,051,792 + EX28DRAFT_1042 0.21 +0.7 1,051,802 + EX28DRAFT_1042 0.22 -0.4 1,051,906 - EX28DRAFT_1042 0.38 -0.4 1,052,082 - EX28DRAFT_1042 0.64 +0.5 1,052,202 + EX28DRAFT_1042 0.82 +2.5 1,052,202 + EX28DRAFT_1042 0.82 +2.1 1,052,202 + EX28DRAFT_1042 0.82 -0.5 1,052,202 + EX28DRAFT_1042 0.82 +1.5 1,052,203 - EX28DRAFT_1042 0.82 -0.0 1,052,208 + EX28DRAFT_1042 0.83 -1.3 1,052,270 + +0.4 1,052,299 + +2.5 1,052,319 + +1.1 1,052,319 + +0.6 1,052,327 + +0.5 1,052,356 + +1.5 1,052,357 - -0.5 1,052,375 + +0.2 1,052,390 + +0.3 1,052,390 + -0.2 1,052,391 - -0.7 1,052,419 + +0.9 1,052,419 + +0.2 1,052,502 + -0.1 1,052,601 + -0.1 1,052,638 + +0.4 1,052,639 - -0.2 1,052,641 - -0.5 1,052,689 + EX28DRAFT_1043 0.12 -0.3 1,052,689 + EX28DRAFT_1043 0.12 -0.5 1,052,689 + EX28DRAFT_1043 0.12 -2.1 1,052,689 + EX28DRAFT_1043 0.12 -0.8 1,052,691 + EX28DRAFT_1043 0.12 -0.9 1,052,692 - EX28DRAFT_1043 0.12 -0.1 1,052,789 - EX28DRAFT_1043 0.16 -0.5 1,052,835 + EX28DRAFT_1043 0.19 +2.2 1,052,836 - EX28DRAFT_1043 0.19 +0.6 1,052,927 - EX28DRAFT_1043 0.23 +0.1 1,053,153 + EX28DRAFT_1043 0.34 -0.1 1,053,213 + EX28DRAFT_1043 0.37 -0.2 1,053,256 - EX28DRAFT_1043 0.39 +0.5
Or see this region's nucleotide sequence