Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1009

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1007 and EX28DRAFT_1008 are separated by 245 nucleotidesEX28DRAFT_1008 and EX28DRAFT_1009 are separated by 428 nucleotidesEX28DRAFT_1009 and EX28DRAFT_1010 are separated by 451 nucleotides EX28DRAFT_1007: EX28DRAFT_1007 - Predicted ATPase of the PP-loop superfamily implicated in cell cycle control, at 1,013,130 to 1,014,065 _1007 EX28DRAFT_1008: EX28DRAFT_1008 - Cupin domain, at 1,014,311 to 1,014,631 _1008 EX28DRAFT_1009: EX28DRAFT_1009 - hypothetical protein, at 1,015,060 to 1,015,287 _1009 EX28DRAFT_1010: EX28DRAFT_1010 - Cold shock proteins, at 1,015,739 to 1,015,957 _1010 Position (kb) 1015 1016Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1014.163 kb on - strandat 1014.211 kb on + strandat 1014.212 kb on - strandat 1014.214 kb on - strandat 1014.214 kb on - strandat 1014.221 kb on + strandat 1014.222 kb on - strandat 1014.230 kb on + strandat 1014.247 kb on + strandat 1014.247 kb on + strandat 1014.250 kb on - strandat 1014.266 kb on + strandat 1014.266 kb on + strandat 1014.267 kb on - strandat 1014.267 kb on - strandat 1014.267 kb on - strandat 1014.268 kb on + strandat 1014.269 kb on - strandat 1014.284 kb on + strandat 1014.295 kb on - strandat 1014.309 kb on + strandat 1014.310 kb on - strandat 1014.368 kb on - strand, within EX28DRAFT_1008at 1014.373 kb on - strand, within EX28DRAFT_1008at 1014.442 kb on - strand, within EX28DRAFT_1008at 1014.442 kb on - strand, within EX28DRAFT_1008at 1014.502 kb on + strand, within EX28DRAFT_1008at 1014.533 kb on + strand, within EX28DRAFT_1008at 1014.533 kb on + strand, within EX28DRAFT_1008at 1014.534 kb on - strand, within EX28DRAFT_1008at 1014.536 kb on - strand, within EX28DRAFT_1008at 1014.559 kb on + strand, within EX28DRAFT_1008at 1014.706 kb on - strandat 1014.738 kb on + strandat 1014.739 kb on - strandat 1014.744 kb on - strandat 1014.744 kb on - strandat 1014.744 kb on - strandat 1014.746 kb on - strandat 1014.746 kb on - strandat 1014.902 kb on - strandat 1015.183 kb on + strand, within EX28DRAFT_1009at 1015.234 kb on + strand, within EX28DRAFT_1009at 1015.287 kb on + strandat 1015.353 kb on + strandat 1015.354 kb on - strandat 1015.558 kb on + strandat 1015.682 kb on - strandat 1015.962 kb on - strandat 1016.280 kb on - strandat 1016.280 kb on - strandat 1016.281 kb on + strandat 1016.282 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,014,163 - -0.1
1,014,211 + +0.9
1,014,212 - +1.5
1,014,214 - -0.0
1,014,214 - -0.1
1,014,221 + -0.4
1,014,222 - +0.3
1,014,230 + -0.6
1,014,247 + -2.1
1,014,247 + -0.0
1,014,250 - +1.8
1,014,266 + -0.5
1,014,266 + +1.0
1,014,267 - +0.4
1,014,267 - -0.6
1,014,267 - -0.3
1,014,268 + +0.5
1,014,269 - +0.5
1,014,284 + +0.1
1,014,295 - +0.7
1,014,309 + +1.1
1,014,310 - -0.5
1,014,368 - EX28DRAFT_1008 0.18 +0.9
1,014,373 - EX28DRAFT_1008 0.19 +0.5
1,014,442 - EX28DRAFT_1008 0.41 -0.2
1,014,442 - EX28DRAFT_1008 0.41 +0.0
1,014,502 + EX28DRAFT_1008 0.60 -0.7
1,014,533 + EX28DRAFT_1008 0.69 +2.1
1,014,533 + EX28DRAFT_1008 0.69 -1.0
1,014,534 - EX28DRAFT_1008 0.69 +0.0
1,014,536 - EX28DRAFT_1008 0.70 +0.3
1,014,559 + EX28DRAFT_1008 0.77 +0.3
1,014,706 - +0.7
1,014,738 + -0.6
1,014,739 - +0.2
1,014,744 - +0.2
1,014,744 - +0.3
1,014,744 - +0.2
1,014,746 - -0.2
1,014,746 - +0.2
1,014,902 - +1.1
1,015,183 + EX28DRAFT_1009 0.54 +0.3
1,015,234 + EX28DRAFT_1009 0.76 -1.9
1,015,287 + -0.0
1,015,353 + +0.7
1,015,354 - -0.0
1,015,558 + +3.0
1,015,682 - -0.1
1,015,962 - -1.0
1,016,280 - +0.2
1,016,280 - +1.1
1,016,281 + +0.4
1,016,282 - -0.6

Or see this region's nucleotide sequence