Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0989

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0987 and EX28DRAFT_0988 overlap by 11 nucleotidesEX28DRAFT_0988 and EX28DRAFT_0989 are separated by 13 nucleotidesEX28DRAFT_0989 and EX28DRAFT_0990 are separated by 66 nucleotides EX28DRAFT_0987: EX28DRAFT_0987 - Trehalose and maltose hydrolases (possible phosphorylases), at 988,033 to 990,312 _0987 EX28DRAFT_0988: EX28DRAFT_0988 - beta-phosphoglucomutase, at 990,302 to 990,967 _0988 EX28DRAFT_0989: EX28DRAFT_0989 - ABC-type sugar transport systems, ATPase components, at 990,981 to 992,063 _0989 EX28DRAFT_0990: EX28DRAFT_0990 - Outer membrane protein G (OmpG), at 992,130 to 993,044 _0990 Position (kb) 990 991 992 993Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 990.059 kb on + strand, within EX28DRAFT_0987at 990.060 kb on - strand, within EX28DRAFT_0987at 990.154 kb on + strandat 990.252 kb on + strandat 990.310 kb on + strandat 990.310 kb on + strandat 990.311 kb on - strandat 990.545 kb on + strand, within EX28DRAFT_0988at 990.545 kb on + strand, within EX28DRAFT_0988at 990.545 kb on + strand, within EX28DRAFT_0988at 990.545 kb on + strand, within EX28DRAFT_0988at 990.545 kb on + strand, within EX28DRAFT_0988at 990.546 kb on - strand, within EX28DRAFT_0988at 990.546 kb on - strand, within EX28DRAFT_0988at 990.546 kb on - strand, within EX28DRAFT_0988at 990.897 kb on + strand, within EX28DRAFT_0988at 990.962 kb on + strandat 990.962 kb on + strandat 990.963 kb on - strandat 990.963 kb on - strandat 990.976 kb on + strandat 990.976 kb on + strandat 991.166 kb on + strand, within EX28DRAFT_0989at 991.233 kb on + strand, within EX28DRAFT_0989at 991.233 kb on + strand, within EX28DRAFT_0989at 991.234 kb on - strand, within EX28DRAFT_0989at 991.234 kb on - strand, within EX28DRAFT_0989at 991.250 kb on + strand, within EX28DRAFT_0989at 991.251 kb on - strand, within EX28DRAFT_0989at 991.260 kb on + strand, within EX28DRAFT_0989at 991.359 kb on + strand, within EX28DRAFT_0989at 991.370 kb on + strand, within EX28DRAFT_0989at 991.535 kb on + strand, within EX28DRAFT_0989at 991.549 kb on - strand, within EX28DRAFT_0989at 991.603 kb on + strand, within EX28DRAFT_0989at 991.617 kb on - strand, within EX28DRAFT_0989at 991.924 kb on - strand, within EX28DRAFT_0989at 992.018 kb on + strandat 992.018 kb on + strandat 992.018 kb on + strandat 992.019 kb on - strandat 992.057 kb on + strandat 992.057 kb on + strandat 992.057 kb on + strandat 992.057 kb on + strandat 992.062 kb on - strandat 992.113 kb on + strandat 992.116 kb on - strandat 992.136 kb on - strandat 992.144 kb on - strandat 992.235 kb on + strand, within EX28DRAFT_0990at 992.281 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.284 kb on - strand, within EX28DRAFT_0990at 992.373 kb on - strand, within EX28DRAFT_0990at 992.413 kb on + strand, within EX28DRAFT_0990at 992.413 kb on + strand, within EX28DRAFT_0990at 992.414 kb on - strand, within EX28DRAFT_0990at 992.414 kb on - strand, within EX28DRAFT_0990at 992.490 kb on - strand, within EX28DRAFT_0990at 992.562 kb on - strand, within EX28DRAFT_0990at 992.604 kb on + strand, within EX28DRAFT_0990at 992.750 kb on + strand, within EX28DRAFT_0990at 992.750 kb on + strand, within EX28DRAFT_0990at 992.751 kb on - strand, within EX28DRAFT_0990at 992.788 kb on - strand, within EX28DRAFT_0990at 992.795 kb on + strand, within EX28DRAFT_0990at 992.796 kb on - strand, within EX28DRAFT_0990at 992.826 kb on + strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.925 kb on + strand, within EX28DRAFT_0990at 992.926 kb on - strand, within EX28DRAFT_0990at 992.961 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
990,059 + EX28DRAFT_0987 0.89 +0.4
990,060 - EX28DRAFT_0987 0.89 +0.1
990,154 + -0.3
990,252 + +0.4
990,310 + +0.1
990,310 + +0.6
990,311 - +0.5
990,545 + EX28DRAFT_0988 0.36 +0.3
990,545 + EX28DRAFT_0988 0.36 +0.1
990,545 + EX28DRAFT_0988 0.36 +0.1
990,545 + EX28DRAFT_0988 0.36 -0.7
990,545 + EX28DRAFT_0988 0.36 +0.7
990,546 - EX28DRAFT_0988 0.37 +0.2
990,546 - EX28DRAFT_0988 0.37 +2.3
990,546 - EX28DRAFT_0988 0.37 -0.1
990,897 + EX28DRAFT_0988 0.89 +0.4
990,962 + +0.5
990,962 + -0.6
990,963 - -0.4
990,963 - +0.4
990,976 + -0.0
990,976 + +0.1
991,166 + EX28DRAFT_0989 0.17 -1.5
991,233 + EX28DRAFT_0989 0.23 +0.4
991,233 + EX28DRAFT_0989 0.23 -0.5
991,234 - EX28DRAFT_0989 0.23 -0.1
991,234 - EX28DRAFT_0989 0.23 -0.5
991,250 + EX28DRAFT_0989 0.25 +0.3
991,251 - EX28DRAFT_0989 0.25 -0.5
991,260 + EX28DRAFT_0989 0.26 +1.3
991,359 + EX28DRAFT_0989 0.35 +1.1
991,370 + EX28DRAFT_0989 0.36 +0.4
991,535 + EX28DRAFT_0989 0.51 +1.2
991,549 - EX28DRAFT_0989 0.52 +0.7
991,603 + EX28DRAFT_0989 0.57 +1.3
991,617 - EX28DRAFT_0989 0.59 -0.2
991,924 - EX28DRAFT_0989 0.87 +0.3
992,018 + +0.1
992,018 + -0.7
992,018 + -0.2
992,019 - +0.3
992,057 + +1.5
992,057 + +0.7
992,057 + +0.1
992,057 + -1.9
992,062 - +1.1
992,113 + -0.4
992,116 - -0.5
992,136 - +0.7
992,144 - -0.2
992,235 + EX28DRAFT_0990 0.11 +0.6
992,281 + EX28DRAFT_0990 0.17 +0.0
992,283 + EX28DRAFT_0990 0.17 +1.1
992,283 + EX28DRAFT_0990 0.17 -0.1
992,283 + EX28DRAFT_0990 0.17 +0.1
992,283 + EX28DRAFT_0990 0.17 +0.5
992,284 - EX28DRAFT_0990 0.17 -0.3
992,373 - EX28DRAFT_0990 0.27 +0.9
992,413 + EX28DRAFT_0990 0.31 -0.3
992,413 + EX28DRAFT_0990 0.31 +0.4
992,414 - EX28DRAFT_0990 0.31 +0.7
992,414 - EX28DRAFT_0990 0.31 -1.8
992,490 - EX28DRAFT_0990 0.39 +0.3
992,562 - EX28DRAFT_0990 0.47 -1.5
992,604 + EX28DRAFT_0990 0.52 +0.2
992,750 + EX28DRAFT_0990 0.68 -3.1
992,750 + EX28DRAFT_0990 0.68 -0.7
992,751 - EX28DRAFT_0990 0.68 +0.4
992,788 - EX28DRAFT_0990 0.72 -0.1
992,795 + EX28DRAFT_0990 0.73 -0.1
992,796 - EX28DRAFT_0990 0.73 -0.1
992,826 + EX28DRAFT_0990 0.76 +0.4
992,920 - EX28DRAFT_0990 0.86 +0.1
992,920 - EX28DRAFT_0990 0.86 +0.1
992,920 - EX28DRAFT_0990 0.86 -0.1
992,925 + EX28DRAFT_0990 0.87 +0.5
992,926 - EX28DRAFT_0990 0.87 -0.2
992,961 + +0.0

Or see this region's nucleotide sequence