Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0968

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0966 and EX28DRAFT_0967 are separated by 202 nucleotidesEX28DRAFT_0967 and EX28DRAFT_0968 overlap by 4 nucleotidesEX28DRAFT_0968 and EX28DRAFT_0969 overlap by 20 nucleotides EX28DRAFT_0966: EX28DRAFT_0966 - hypothetical protein, at 968,589 to 969,044 _0966 EX28DRAFT_0967: EX28DRAFT_0967 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 969,247 to 969,951 _0967 EX28DRAFT_0968: EX28DRAFT_0968 - Signal transduction histidine kinase, at 969,948 to 971,012 _0968 EX28DRAFT_0969: EX28DRAFT_0969 - TupA-like ATPgrasp, at 970,993 to 971,934 _0969 Position (kb) 969 970 971 972Strain fitness (log2 ratio) -2 -1 0 1 2 3at 969.135 kb on + strandat 969.205 kb on - strandat 969.302 kb on + strandat 969.303 kb on - strandat 969.314 kb on - strandat 969.317 kb on + strandat 969.387 kb on + strand, within EX28DRAFT_0967at 969.402 kb on - strand, within EX28DRAFT_0967at 969.443 kb on + strand, within EX28DRAFT_0967at 969.443 kb on + strand, within EX28DRAFT_0967at 969.444 kb on - strand, within EX28DRAFT_0967at 969.447 kb on + strand, within EX28DRAFT_0967at 969.484 kb on - strand, within EX28DRAFT_0967at 969.548 kb on - strand, within EX28DRAFT_0967at 969.660 kb on + strand, within EX28DRAFT_0967at 969.686 kb on - strand, within EX28DRAFT_0967at 969.749 kb on + strand, within EX28DRAFT_0967at 969.750 kb on - strand, within EX28DRAFT_0967at 969.754 kb on - strand, within EX28DRAFT_0967at 969.829 kb on - strand, within EX28DRAFT_0967at 969.829 kb on - strand, within EX28DRAFT_0967at 969.855 kb on + strand, within EX28DRAFT_0967at 969.987 kb on + strandat 969.987 kb on + strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.988 kb on - strandat 969.989 kb on + strandat 969.990 kb on - strandat 969.990 kb on - strandat 969.990 kb on - strandat 970.007 kb on + strandat 970.028 kb on - strandat 970.028 kb on - strandat 970.152 kb on - strand, within EX28DRAFT_0968at 970.157 kb on + strand, within EX28DRAFT_0968at 970.184 kb on - strand, within EX28DRAFT_0968at 970.411 kb on + strand, within EX28DRAFT_0968at 970.411 kb on + strand, within EX28DRAFT_0968at 970.412 kb on - strand, within EX28DRAFT_0968at 970.412 kb on - strand, within EX28DRAFT_0968at 970.472 kb on + strand, within EX28DRAFT_0968at 970.473 kb on - strand, within EX28DRAFT_0968at 970.551 kb on + strand, within EX28DRAFT_0968at 970.729 kb on + strand, within EX28DRAFT_0968at 970.734 kb on + strand, within EX28DRAFT_0968at 970.735 kb on - strand, within EX28DRAFT_0968at 970.735 kb on - strand, within EX28DRAFT_0968at 970.788 kb on + strand, within EX28DRAFT_0968at 970.789 kb on - strand, within EX28DRAFT_0968at 970.789 kb on - strand, within EX28DRAFT_0968at 970.789 kb on - strand, within EX28DRAFT_0968at 970.791 kb on - strand, within EX28DRAFT_0968at 970.796 kb on + strand, within EX28DRAFT_0968at 970.952 kb on + strandat 970.952 kb on + strandat 970.952 kb on + strandat 970.952 kb on + strandat 970.952 kb on + strandat 970.956 kb on + strandat 970.957 kb on - strandat 970.957 kb on - strandat 970.957 kb on - strandat 970.957 kb on - strandat 970.959 kb on - strandat 970.984 kb on + strandat 970.985 kb on - strandat 970.988 kb on + strandat 971.048 kb on - strandat 971.065 kb on + strandat 971.070 kb on + strandat 971.070 kb on + strandat 971.070 kb on + strandat 971.070 kb on + strandat 971.071 kb on - strandat 971.071 kb on - strandat 971.125 kb on + strand, within EX28DRAFT_0969at 971.138 kb on + strand, within EX28DRAFT_0969at 971.160 kb on + strand, within EX28DRAFT_0969at 971.160 kb on + strand, within EX28DRAFT_0969at 971.161 kb on - strand, within EX28DRAFT_0969at 971.284 kb on + strand, within EX28DRAFT_0969at 971.284 kb on + strand, within EX28DRAFT_0969at 971.285 kb on - strand, within EX28DRAFT_0969at 971.285 kb on - strand, within EX28DRAFT_0969at 971.304 kb on - strand, within EX28DRAFT_0969at 971.350 kb on + strand, within EX28DRAFT_0969at 971.350 kb on + strand, within EX28DRAFT_0969at 971.350 kb on + strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.351 kb on - strand, within EX28DRAFT_0969at 971.355 kb on - strand, within EX28DRAFT_0969at 971.435 kb on + strand, within EX28DRAFT_0969at 971.436 kb on - strand, within EX28DRAFT_0969at 971.449 kb on + strand, within EX28DRAFT_0969at 971.450 kb on - strand, within EX28DRAFT_0969at 971.450 kb on - strand, within EX28DRAFT_0969at 971.450 kb on - strand, within EX28DRAFT_0969at 971.460 kb on + strand, within EX28DRAFT_0969at 971.566 kb on - strand, within EX28DRAFT_0969at 971.569 kb on + strand, within EX28DRAFT_0969at 971.569 kb on + strand, within EX28DRAFT_0969at 971.572 kb on + strand, within EX28DRAFT_0969at 971.665 kb on + strand, within EX28DRAFT_0969at 971.748 kb on + strand, within EX28DRAFT_0969at 971.777 kb on - strand, within EX28DRAFT_0969at 971.842 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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969,135 + -0.1
969,205 - -1.0
969,302 + +0.3
969,303 - -0.7
969,314 - +0.1
969,317 + -0.5
969,387 + EX28DRAFT_0967 0.20 +1.6
969,402 - EX28DRAFT_0967 0.22 -1.5
969,443 + EX28DRAFT_0967 0.28 +0.4
969,443 + EX28DRAFT_0967 0.28 +0.6
969,444 - EX28DRAFT_0967 0.28 -0.9
969,447 + EX28DRAFT_0967 0.28 +1.1
969,484 - EX28DRAFT_0967 0.34 -0.5
969,548 - EX28DRAFT_0967 0.43 +0.3
969,660 + EX28DRAFT_0967 0.59 -0.9
969,686 - EX28DRAFT_0967 0.62 -0.5
969,749 + EX28DRAFT_0967 0.71 +0.3
969,750 - EX28DRAFT_0967 0.71 +0.0
969,754 - EX28DRAFT_0967 0.72 -0.0
969,829 - EX28DRAFT_0967 0.83 +0.3
969,829 - EX28DRAFT_0967 0.83 -0.2
969,855 + EX28DRAFT_0967 0.86 -0.2
969,987 + -1.7
969,987 + +1.2
969,988 - -1.2
969,988 - +0.4
969,988 - +0.6
969,988 - +0.4
969,988 - +0.4
969,988 - +0.4
969,988 - +1.1
969,989 + -0.3
969,990 - -0.7
969,990 - +0.2
969,990 - -0.1
970,007 + -0.1
970,028 - +2.2
970,028 - +1.2
970,152 - EX28DRAFT_0968 0.19 -0.6
970,157 + EX28DRAFT_0968 0.20 -0.7
970,184 - EX28DRAFT_0968 0.22 -0.3
970,411 + EX28DRAFT_0968 0.43 +0.5
970,411 + EX28DRAFT_0968 0.43 -0.1
970,412 - EX28DRAFT_0968 0.44 +0.4
970,412 - EX28DRAFT_0968 0.44 -1.0
970,472 + EX28DRAFT_0968 0.49 -0.2
970,473 - EX28DRAFT_0968 0.49 -0.1
970,551 + EX28DRAFT_0968 0.57 -0.5
970,729 + EX28DRAFT_0968 0.73 -0.7
970,734 + EX28DRAFT_0968 0.74 +0.2
970,735 - EX28DRAFT_0968 0.74 -0.7
970,735 - EX28DRAFT_0968 0.74 +1.3
970,788 + EX28DRAFT_0968 0.79 -1.3
970,789 - EX28DRAFT_0968 0.79 +0.5
970,789 - EX28DRAFT_0968 0.79 -0.3
970,789 - EX28DRAFT_0968 0.79 +0.9
970,791 - EX28DRAFT_0968 0.79 +0.1
970,796 + EX28DRAFT_0968 0.80 -0.0
970,952 + +1.1
970,952 + -0.3
970,952 + +0.2
970,952 + -0.7
970,952 + +0.1
970,956 + -0.2
970,957 - -0.1
970,957 - +0.6
970,957 - -1.2
970,957 - +0.6
970,959 - -0.7
970,984 + +0.2
970,985 - +0.8
970,988 + +0.3
971,048 - +1.1
971,065 + +0.1
971,070 + +0.2
971,070 + +0.5
971,070 + -1.2
971,070 + -0.1
971,071 - -0.1
971,071 - +0.2
971,125 + EX28DRAFT_0969 0.14 +0.1
971,138 + EX28DRAFT_0969 0.15 +0.2
971,160 + EX28DRAFT_0969 0.18 -0.4
971,160 + EX28DRAFT_0969 0.18 +2.9
971,161 - EX28DRAFT_0969 0.18 -0.0
971,284 + EX28DRAFT_0969 0.31 -0.2
971,284 + EX28DRAFT_0969 0.31 -1.1
971,285 - EX28DRAFT_0969 0.31 -0.2
971,285 - EX28DRAFT_0969 0.31 +0.3
971,304 - EX28DRAFT_0969 0.33 +0.7
971,350 + EX28DRAFT_0969 0.38 +0.3
971,350 + EX28DRAFT_0969 0.38 -0.1
971,350 + EX28DRAFT_0969 0.38 -2.1
971,351 - EX28DRAFT_0969 0.38 -0.2
971,351 - EX28DRAFT_0969 0.38 -0.3
971,351 - EX28DRAFT_0969 0.38 +0.2
971,351 - EX28DRAFT_0969 0.38 -0.6
971,355 - EX28DRAFT_0969 0.38 +0.3
971,435 + EX28DRAFT_0969 0.47 -0.2
971,436 - EX28DRAFT_0969 0.47 -0.1
971,449 + EX28DRAFT_0969 0.48 +0.3
971,450 - EX28DRAFT_0969 0.49 -0.4
971,450 - EX28DRAFT_0969 0.49 +0.2
971,450 - EX28DRAFT_0969 0.49 -0.7
971,460 + EX28DRAFT_0969 0.50 +0.6
971,566 - EX28DRAFT_0969 0.61 -1.5
971,569 + EX28DRAFT_0969 0.61 +0.7
971,569 + EX28DRAFT_0969 0.61 -1.5
971,572 + EX28DRAFT_0969 0.61 -0.2
971,665 + EX28DRAFT_0969 0.71 +0.8
971,748 + EX28DRAFT_0969 0.80 -0.7
971,777 - EX28DRAFT_0969 0.83 -1.6
971,842 + +0.0

Or see this region's nucleotide sequence