Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0960

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0959 and EX28DRAFT_0960 overlap by 4 nucleotidesEX28DRAFT_0960 and EX28DRAFT_0961 are separated by 323 nucleotides EX28DRAFT_0959: EX28DRAFT_0959 - Enoyl-CoA hydratase/carnithine racemase, at 957,051 to 957,920 _0959 EX28DRAFT_0960: EX28DRAFT_0960 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 957,917 to 959,908 _0960 EX28DRAFT_0961: EX28DRAFT_0961 - exoribonuclease II, at 960,232 to 962,166 _0961 Position (kb) 957 958 959 960Strain fitness (log2 ratio) -2 -1 0 1 2at 956.940 kb on + strandat 956.955 kb on + strandat 956.956 kb on - strandat 957.050 kb on + strandat 957.051 kb on - strandat 957.051 kb on - strandat 957.060 kb on - strandat 957.071 kb on + strandat 957.123 kb on + strandat 957.194 kb on - strand, within EX28DRAFT_0959at 957.194 kb on - strand, within EX28DRAFT_0959at 957.196 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.285 kb on + strand, within EX28DRAFT_0959at 957.286 kb on - strand, within EX28DRAFT_0959at 957.304 kb on + strand, within EX28DRAFT_0959at 957.558 kb on + strand, within EX28DRAFT_0959at 957.609 kb on + strand, within EX28DRAFT_0959at 957.609 kb on + strand, within EX28DRAFT_0959at 957.610 kb on - strand, within EX28DRAFT_0959at 957.610 kb on - strand, within EX28DRAFT_0959at 957.610 kb on - strand, within EX28DRAFT_0959at 957.687 kb on + strand, within EX28DRAFT_0959at 957.687 kb on + strand, within EX28DRAFT_0959at 957.818 kb on - strand, within EX28DRAFT_0959at 957.856 kb on - strandat 957.856 kb on - strandat 957.918 kb on + strandat 958.127 kb on - strand, within EX28DRAFT_0960at 958.127 kb on - strand, within EX28DRAFT_0960at 958.136 kb on - strand, within EX28DRAFT_0960at 958.300 kb on + strand, within EX28DRAFT_0960at 958.338 kb on + strand, within EX28DRAFT_0960at 958.338 kb on + strand, within EX28DRAFT_0960at 958.371 kb on - strand, within EX28DRAFT_0960at 958.371 kb on - strand, within EX28DRAFT_0960at 958.528 kb on - strand, within EX28DRAFT_0960at 958.534 kb on + strand, within EX28DRAFT_0960at 958.764 kb on + strand, within EX28DRAFT_0960at 958.764 kb on + strand, within EX28DRAFT_0960at 958.851 kb on + strand, within EX28DRAFT_0960at 958.851 kb on + strand, within EX28DRAFT_0960at 958.852 kb on - strand, within EX28DRAFT_0960at 958.852 kb on - strand, within EX28DRAFT_0960at 958.862 kb on - strand, within EX28DRAFT_0960at 958.936 kb on + strand, within EX28DRAFT_0960at 959.050 kb on + strand, within EX28DRAFT_0960at 959.051 kb on - strand, within EX28DRAFT_0960at 959.051 kb on - strand, within EX28DRAFT_0960at 959.097 kb on + strand, within EX28DRAFT_0960at 959.260 kb on + strand, within EX28DRAFT_0960at 959.260 kb on + strand, within EX28DRAFT_0960at 959.361 kb on + strand, within EX28DRAFT_0960at 959.362 kb on - strand, within EX28DRAFT_0960at 959.437 kb on + strand, within EX28DRAFT_0960at 959.438 kb on - strand, within EX28DRAFT_0960at 959.438 kb on - strand, within EX28DRAFT_0960at 959.442 kb on - strand, within EX28DRAFT_0960at 959.442 kb on - strand, within EX28DRAFT_0960at 959.481 kb on + strand, within EX28DRAFT_0960at 959.500 kb on + strand, within EX28DRAFT_0960at 959.615 kb on - strand, within EX28DRAFT_0960at 959.728 kb on + strandat 959.944 kb on - strandat 960.020 kb on + strandat 960.020 kb on + strandat 960.021 kb on - strandat 960.025 kb on + strandat 960.025 kb on + strandat 960.025 kb on + strandat 960.096 kb on + strandat 960.101 kb on + strandat 960.106 kb on - strandat 960.106 kb on - strandat 960.109 kb on + strandat 960.110 kb on - strandat 960.110 kb on - strandat 960.141 kb on + strandat 960.142 kb on - strandat 960.330 kb on + strandat 960.662 kb on + strand, within EX28DRAFT_0961at 960.662 kb on + strand, within EX28DRAFT_0961at 960.692 kb on + strand, within EX28DRAFT_0961

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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956,940 + +0.0
956,955 + +0.0
956,956 - -0.1
957,050 + +1.1
957,051 - +0.5
957,051 - +0.0
957,060 - -0.3
957,071 + +0.3
957,123 + -0.7
957,194 - EX28DRAFT_0959 0.16 +0.1
957,194 - EX28DRAFT_0959 0.16 +0.1
957,196 + EX28DRAFT_0959 0.17 -0.5
957,285 + EX28DRAFT_0959 0.27 +1.2
957,285 + EX28DRAFT_0959 0.27 +0.2
957,285 + EX28DRAFT_0959 0.27 -0.1
957,285 + EX28DRAFT_0959 0.27 +1.7
957,286 - EX28DRAFT_0959 0.27 +0.6
957,304 + EX28DRAFT_0959 0.29 +0.1
957,558 + EX28DRAFT_0959 0.58 -0.7
957,609 + EX28DRAFT_0959 0.64 -0.2
957,609 + EX28DRAFT_0959 0.64 -0.2
957,610 - EX28DRAFT_0959 0.64 -0.6
957,610 - EX28DRAFT_0959 0.64 -0.9
957,610 - EX28DRAFT_0959 0.64 +0.3
957,687 + EX28DRAFT_0959 0.73 -0.9
957,687 + EX28DRAFT_0959 0.73 +0.6
957,818 - EX28DRAFT_0959 0.88 -0.7
957,856 - -0.1
957,856 - +0.5
957,918 + -0.2
958,127 - EX28DRAFT_0960 0.11 +0.2
958,127 - EX28DRAFT_0960 0.11 +1.3
958,136 - EX28DRAFT_0960 0.11 +0.1
958,300 + EX28DRAFT_0960 0.19 +0.1
958,338 + EX28DRAFT_0960 0.21 +0.8
958,338 + EX28DRAFT_0960 0.21 +0.6
958,371 - EX28DRAFT_0960 0.23 +0.3
958,371 - EX28DRAFT_0960 0.23 -1.0
958,528 - EX28DRAFT_0960 0.31 +0.9
958,534 + EX28DRAFT_0960 0.31 +1.1
958,764 + EX28DRAFT_0960 0.43 +0.6
958,764 + EX28DRAFT_0960 0.43 -0.1
958,851 + EX28DRAFT_0960 0.47 +0.5
958,851 + EX28DRAFT_0960 0.47 +0.6
958,852 - EX28DRAFT_0960 0.47 +0.7
958,852 - EX28DRAFT_0960 0.47 +0.3
958,862 - EX28DRAFT_0960 0.47 +0.7
958,936 + EX28DRAFT_0960 0.51 +0.3
959,050 + EX28DRAFT_0960 0.57 -1.0
959,051 - EX28DRAFT_0960 0.57 +0.3
959,051 - EX28DRAFT_0960 0.57 +0.1
959,097 + EX28DRAFT_0960 0.59 +0.2
959,260 + EX28DRAFT_0960 0.67 -2.0
959,260 + EX28DRAFT_0960 0.67 -0.1
959,361 + EX28DRAFT_0960 0.72 +0.7
959,362 - EX28DRAFT_0960 0.73 -0.9
959,437 + EX28DRAFT_0960 0.76 -0.1
959,438 - EX28DRAFT_0960 0.76 +0.1
959,438 - EX28DRAFT_0960 0.76 -1.1
959,442 - EX28DRAFT_0960 0.77 -2.2
959,442 - EX28DRAFT_0960 0.77 +0.1
959,481 + EX28DRAFT_0960 0.79 -1.1
959,500 + EX28DRAFT_0960 0.79 +0.2
959,615 - EX28DRAFT_0960 0.85 +1.5
959,728 + -1.0
959,944 - -0.5
960,020 + +1.4
960,020 + -0.0
960,021 - +0.4
960,025 + -0.2
960,025 + +0.0
960,025 + -1.7
960,096 + +0.5
960,101 + +0.3
960,106 - +0.2
960,106 - -2.5
960,109 + +0.8
960,110 - +0.6
960,110 - -0.4
960,141 + -0.3
960,142 - +0.0
960,330 + +2.1
960,662 + EX28DRAFT_0961 0.22 -0.5
960,662 + EX28DRAFT_0961 0.22 -0.5
960,692 + EX28DRAFT_0961 0.24 -1.4

Or see this region's nucleotide sequence