Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0872

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0871 and EX28DRAFT_0872 overlap by 4 nucleotidesEX28DRAFT_0872 and EX28DRAFT_0873 are separated by 14 nucleotidesEX28DRAFT_0873 and EX28DRAFT_0874 are separated by 31 nucleotides EX28DRAFT_0871: EX28DRAFT_0871 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 884,369 to 885,382 _0871 EX28DRAFT_0872: EX28DRAFT_0872 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 885,379 to 886,383 _0872 EX28DRAFT_0873: EX28DRAFT_0873 - Kef-type K+ transport systems, predicted NAD-binding component, at 886,398 to 887,267 _0873 EX28DRAFT_0874: EX28DRAFT_0874 - Uncharacterized protein conserved in bacteria, at 887,299 to 887,628 _0874 Position (kb) 885 886 887Strain fitness (log2 ratio) -1 0 1at 884.456 kb on - strandat 884.476 kb on + strand, within EX28DRAFT_0871at 884.477 kb on - strand, within EX28DRAFT_0871at 884.727 kb on - strand, within EX28DRAFT_0871at 884.728 kb on + strand, within EX28DRAFT_0871at 884.851 kb on + strand, within EX28DRAFT_0871at 884.852 kb on - strand, within EX28DRAFT_0871at 884.852 kb on - strand, within EX28DRAFT_0871at 884.884 kb on + strand, within EX28DRAFT_0871at 884.953 kb on + strand, within EX28DRAFT_0871at 885.095 kb on + strand, within EX28DRAFT_0871at 885.140 kb on + strand, within EX28DRAFT_0871at 885.140 kb on + strand, within EX28DRAFT_0871at 885.141 kb on - strand, within EX28DRAFT_0871at 885.390 kb on - strandat 885.730 kb on - strand, within EX28DRAFT_0872at 885.730 kb on - strand, within EX28DRAFT_0872at 885.769 kb on + strand, within EX28DRAFT_0872at 885.895 kb on - strand, within EX28DRAFT_0872at 885.895 kb on - strand, within EX28DRAFT_0872at 885.901 kb on - strand, within EX28DRAFT_0872at 886.093 kb on + strand, within EX28DRAFT_0872at 886.094 kb on - strand, within EX28DRAFT_0872at 886.094 kb on - strand, within EX28DRAFT_0872at 886.094 kb on - strand, within EX28DRAFT_0872at 886.094 kb on - strand, within EX28DRAFT_0872at 886.123 kb on + strand, within EX28DRAFT_0872at 886.123 kb on + strand, within EX28DRAFT_0872at 886.136 kb on - strand, within EX28DRAFT_0872at 886.140 kb on + strand, within EX28DRAFT_0872at 886.140 kb on + strand, within EX28DRAFT_0872at 886.140 kb on + strand, within EX28DRAFT_0872at 886.213 kb on - strand, within EX28DRAFT_0872at 886.314 kb on + strandat 886.380 kb on - strandat 886.380 kb on - strandat 886.466 kb on - strandat 886.585 kb on - strand, within EX28DRAFT_0873at 886.585 kb on - strand, within EX28DRAFT_0873at 886.611 kb on - strand, within EX28DRAFT_0873at 886.675 kb on + strand, within EX28DRAFT_0873at 886.675 kb on + strand, within EX28DRAFT_0873at 886.698 kb on + strand, within EX28DRAFT_0873at 886.749 kb on + strand, within EX28DRAFT_0873at 886.749 kb on + strand, within EX28DRAFT_0873at 886.750 kb on - strand, within EX28DRAFT_0873at 886.750 kb on - strand, within EX28DRAFT_0873at 886.750 kb on - strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.785 kb on + strand, within EX28DRAFT_0873at 886.786 kb on - strand, within EX28DRAFT_0873at 886.825 kb on + strand, within EX28DRAFT_0873at 886.825 kb on + strand, within EX28DRAFT_0873at 886.830 kb on - strand, within EX28DRAFT_0873at 886.830 kb on - strand, within EX28DRAFT_0873at 886.862 kb on - strand, within EX28DRAFT_0873at 886.923 kb on - strand, within EX28DRAFT_0873at 886.959 kb on + strand, within EX28DRAFT_0873at 886.960 kb on - strand, within EX28DRAFT_0873at 886.964 kb on - strand, within EX28DRAFT_0873at 886.964 kb on - strand, within EX28DRAFT_0873at 886.966 kb on + strand, within EX28DRAFT_0873at 886.967 kb on - strand, within EX28DRAFT_0873at 886.967 kb on - strand, within EX28DRAFT_0873at 887.064 kb on - strand, within EX28DRAFT_0873at 887.139 kb on - strand, within EX28DRAFT_0873at 887.139 kb on - strand, within EX28DRAFT_0873at 887.368 kb on - strand, within EX28DRAFT_0874

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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884,456 - +0.3
884,476 + EX28DRAFT_0871 0.11 +0.2
884,477 - EX28DRAFT_0871 0.11 -1.2
884,727 - EX28DRAFT_0871 0.35 -0.8
884,728 + EX28DRAFT_0871 0.35 +1.1
884,851 + EX28DRAFT_0871 0.48 +0.3
884,852 - EX28DRAFT_0871 0.48 -0.0
884,852 - EX28DRAFT_0871 0.48 +0.2
884,884 + EX28DRAFT_0871 0.51 +0.0
884,953 + EX28DRAFT_0871 0.58 -0.4
885,095 + EX28DRAFT_0871 0.72 -0.8
885,140 + EX28DRAFT_0871 0.76 -1.3
885,140 + EX28DRAFT_0871 0.76 +0.4
885,141 - EX28DRAFT_0871 0.76 -0.0
885,390 - -0.1
885,730 - EX28DRAFT_0872 0.35 -0.2
885,730 - EX28DRAFT_0872 0.35 +1.2
885,769 + EX28DRAFT_0872 0.39 -0.4
885,895 - EX28DRAFT_0872 0.51 -0.1
885,895 - EX28DRAFT_0872 0.51 +0.0
885,901 - EX28DRAFT_0872 0.52 +1.0
886,093 + EX28DRAFT_0872 0.71 -0.1
886,094 - EX28DRAFT_0872 0.71 -0.0
886,094 - EX28DRAFT_0872 0.71 -0.2
886,094 - EX28DRAFT_0872 0.71 +0.4
886,094 - EX28DRAFT_0872 0.71 +0.0
886,123 + EX28DRAFT_0872 0.74 -0.3
886,123 + EX28DRAFT_0872 0.74 +0.2
886,136 - EX28DRAFT_0872 0.75 +1.4
886,140 + EX28DRAFT_0872 0.76 +0.1
886,140 + EX28DRAFT_0872 0.76 +1.2
886,140 + EX28DRAFT_0872 0.76 +0.2
886,213 - EX28DRAFT_0872 0.83 +0.3
886,314 + -0.4
886,380 - +0.3
886,380 - -1.4
886,466 - +1.6
886,585 - EX28DRAFT_0873 0.21 +0.6
886,585 - EX28DRAFT_0873 0.21 +1.0
886,611 - EX28DRAFT_0873 0.24 +0.2
886,675 + EX28DRAFT_0873 0.32 +0.0
886,675 + EX28DRAFT_0873 0.32 +0.1
886,698 + EX28DRAFT_0873 0.34 +0.8
886,749 + EX28DRAFT_0873 0.40 -1.3
886,749 + EX28DRAFT_0873 0.40 -0.0
886,750 - EX28DRAFT_0873 0.40 +0.4
886,750 - EX28DRAFT_0873 0.40 -0.3
886,750 - EX28DRAFT_0873 0.40 +0.1
886,785 + EX28DRAFT_0873 0.44 +0.1
886,785 + EX28DRAFT_0873 0.44 +0.0
886,785 + EX28DRAFT_0873 0.44 -0.5
886,785 + EX28DRAFT_0873 0.44 +0.9
886,786 - EX28DRAFT_0873 0.45 -0.1
886,825 + EX28DRAFT_0873 0.49 -0.1
886,825 + EX28DRAFT_0873 0.49 +0.0
886,830 - EX28DRAFT_0873 0.50 -0.5
886,830 - EX28DRAFT_0873 0.50 +0.9
886,862 - EX28DRAFT_0873 0.53 -0.2
886,923 - EX28DRAFT_0873 0.60 +0.1
886,959 + EX28DRAFT_0873 0.64 +0.6
886,960 - EX28DRAFT_0873 0.65 +0.4
886,964 - EX28DRAFT_0873 0.65 -0.2
886,964 - EX28DRAFT_0873 0.65 -0.4
886,966 + EX28DRAFT_0873 0.65 -0.2
886,967 - EX28DRAFT_0873 0.65 +1.6
886,967 - EX28DRAFT_0873 0.65 +0.2
887,064 - EX28DRAFT_0873 0.77 +0.3
887,139 - EX28DRAFT_0873 0.85 -0.5
887,139 - EX28DRAFT_0873 0.85 -0.9
887,368 - EX28DRAFT_0874 0.21 +1.1

Or see this region's nucleotide sequence